Wall clock time and date at job start Tue Mar 31 2020 00:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46655 * 2 1 4 4 C 1.35363 * 126.38899 * 85.00542 * 3 2 1 5 5 C 1.41495 * 105.50789 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.52293 * 179.97438 * 5 4 3 7 7 O 1.21569 * 119.99353 * 353.45555 * 6 5 4 8 8 N 1.34778 * 120.00180 * 173.45268 * 6 5 4 9 9 C 1.46498 * 120.00074 * 3.53781 * 8 6 5 10 10 C 1.46497 * 119.99710 * 183.53226 * 8 6 5 11 11 C 1.53946 * 113.74127 * 218.73996 * 10 8 6 12 12 N 1.47811 * 86.03794 * 222.08945 * 11 10 8 13 13 C 1.36935 * 134.45450 * 204.65312 * 12 11 10 14 14 H 1.07998 * 119.99847 * 179.87016 * 13 12 11 15 15 C 1.38811 * 120.00368 * 359.85693 * 13 12 11 16 16 N 1.31620 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00259 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47068 * 90.00219 * 17 15 13 19 19 H 1.48502 * 109.47111 * 210.00229 * 17 15 13 20 20 H 1.48492 * 109.46897 * 330.00191 * 17 15 13 21 21 C 1.47576 * 91.05238 * 24.54771 * 12 11 10 22 22 N 1.31815 * 106.96457 * 359.97438 * 5 4 3 23 23 N 1.28472 * 110.07134 * 359.76174 * 22 5 4 24 24 H 0.96993 * 124.89221 * 180.23700 * 23 22 5 25 25 H 1.09007 * 109.47248 * 60.00382 * 1 2 3 26 26 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47366 * 300.00143 * 1 2 3 28 28 H 1.08999 * 109.46822 * 120.00035 * 2 1 3 29 29 H 1.08996 * 109.46499 * 240.00059 * 2 1 3 30 30 H 1.08002 * 127.24680 * 359.92659 * 4 3 2 31 31 H 1.09002 * 109.47259 * 84.08778 * 9 8 6 32 32 H 1.08991 * 109.46902 * 204.09115 * 9 8 6 33 33 H 1.09000 * 109.46994 * 324.08659 * 9 8 6 34 34 H 1.08994 * 112.94633 * 350.33871 * 10 8 6 35 35 H 1.08994 * 113.76982 * 336.35640 * 11 10 8 36 36 H 1.09005 * 113.76759 * 107.74670 * 11 10 8 37 37 H 0.97002 * 120.00682 * 179.97438 * 16 15 13 38 38 H 1.08999 * 113.77589 * 221.15300 * 21 12 11 39 39 H 1.09004 * 113.76798 * 89.75240 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2096 1.0855 5 6 2.6930 3.4412 0.5832 6 6 3.0421 4.6377 1.3759 7 8 2.8123 4.6644 2.5694 8 7 3.6155 5.6998 0.7761 9 6 3.8218 5.6989 -0.6743 10 6 4.0324 6.8551 1.5745 11 6 3.7734 8.2087 0.8884 12 7 5.1087 8.6005 1.3866 13 6 5.7115 9.7954 1.6765 14 1 6.7282 9.8131 2.0402 15 6 5.0158 10.9840 1.5027 16 7 3.7766 10.9624 1.0597 17 14 5.8383 12.6140 1.8975 18 1 6.5254 13.1281 0.6856 19 1 4.8117 13.5928 2.3372 20 1 6.8315 12.4169 2.9836 21 6 5.5302 7.1876 1.4486 22 7 2.7718 3.3179 -0.7268 23 7 2.3946 2.1424 -1.0825 24 1 2.3707 1.8204 -1.9971 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0229 1.9531 2.1178 31 1 2.9084 6.0255 -1.1714 32 1 4.6355 6.3789 -0.9259 33 1 4.0749 4.6914 -1.0046 34 1 3.6780 6.8102 2.6043 35 1 3.7109 8.1457 -0.1980 36 1 2.9543 8.7758 1.3306 37 1 3.2902 11.7929 0.9386 38 1 6.1112 6.9410 2.3372 39 1 5.9850 6.8240 0.5271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042493519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:05 Heat of formation + Delta-G solvation = 105.196558 kcal Electronic energy + Delta-G solvation = -21371.879222 eV Core-core repulsion = 18125.689386 eV Total energy + Delta-G solvation = -3246.189836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.78608 -39.46661 -37.42816 -34.77018 -34.17466 -32.13233 -31.61771 -29.54865 -27.63756 -26.52023 -24.74799 -24.53818 -24.06627 -22.28868 -21.17821 -19.44976 -18.39285 -17.88595 -16.80828 -16.46560 -15.92720 -15.75396 -14.92904 -14.77825 -14.50985 -14.10254 -13.76518 -13.66365 -13.44920 -12.82111 -12.77430 -12.34185 -12.13194 -11.97245 -11.73221 -11.51234 -11.45290 -11.23400 -10.86492 -10.67089 -10.52013 -10.19073 -10.04238 -9.64971 -9.50738 -9.41607 -9.08108 -8.76461 -8.01778 -6.86807 -5.74704 -3.07510 1.60646 2.03410 2.71083 3.37400 3.43269 3.47520 3.49132 3.62677 4.27802 4.42681 4.49800 4.58940 4.86516 5.06564 5.18230 5.25629 5.35730 5.47563 5.51850 5.56017 5.60850 5.69503 5.77911 5.84536 6.00010 6.09111 6.16413 6.28056 6.37602 6.51231 6.64398 6.83023 6.93574 7.25264 7.40911 7.56579 7.75354 7.88774 7.99102 8.53177 9.06077 9.72204 10.59949 11.42517 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053318 B = 0.003235 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.020131 B = 8654.075908 C = 8746.516798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.176 4.176 5 C 0.001 3.999 6 C 0.593 3.407 7 O -0.540 6.540 8 N -0.584 5.584 9 C 0.076 3.924 10 C 0.089 3.911 11 C 0.158 3.842 12 N -0.607 5.607 13 C -0.222 4.222 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.109 3.891 22 N -0.254 5.254 23 N -0.387 5.387 24 H 0.441 0.559 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 -23.003 -6.419 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.113 4.113 4 C -0.204 4.204 5 C -0.160 4.160 6 C 0.379 3.621 7 O -0.416 6.416 8 N -0.316 5.316 9 C -0.067 4.067 10 C -0.014 4.014 11 C 0.032 3.968 12 N -0.333 5.333 13 C -0.349 4.349 14 H 0.099 0.901 15 C -0.204 4.204 16 N -0.567 5.567 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.018 4.018 22 N -0.090 5.090 23 N -0.101 5.101 24 H 0.285 0.715 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.864 -21.978 -6.654 23.473 hybrid contribution 0.229 0.398 0.061 0.463 sum -4.635 -21.581 -6.593 23.036 Atomic orbital electron populations 1.21790 0.94049 1.02156 1.02779 1.20102 0.96428 0.88810 1.03853 1.21416 1.05594 0.96844 0.87492 1.21494 1.06773 0.92435 0.99744 1.22102 1.07150 0.96957 0.89761 1.17047 0.77854 0.81146 0.86061 1.90767 1.54955 1.81454 1.14402 1.47895 1.58322 1.16674 1.08681 1.22060 1.01748 1.03486 0.79396 1.24090 0.96110 0.84127 0.97071 1.22670 0.90657 0.87661 0.95847 1.45707 1.11995 0.99819 1.75809 1.18994 0.96889 0.81704 1.37333 0.90052 1.24807 0.96474 0.97637 1.01524 1.69820 1.09747 1.26043 1.51112 0.86086 0.78140 0.83424 0.77907 1.21633 1.21600 1.20563 1.22978 0.94167 0.86237 0.98446 1.73834 1.18217 1.01780 1.15160 1.43480 1.47816 1.09025 1.09744 0.71473 0.92696 0.91829 0.91768 0.89098 0.90768 0.82183 0.92752 0.90849 0.89461 0.86497 0.94923 0.90474 0.93578 0.93419 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.05 -0.28 6.49 -27.88 -0.18 -0.46 16 3 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 4 C -0.18 -2.19 10.73 -39.37 -0.42 -2.61 16 5 C 0.00 0.02 6.82 -82.76 -0.56 -0.55 16 6 C 0.59 10.96 7.68 -12.39 -0.10 10.87 16 7 O -0.54 -11.48 16.40 5.30 0.09 -11.39 16 8 N -0.58 -10.74 3.09 -176.91 -0.55 -11.28 16 9 C 0.08 1.19 8.33 59.85 0.50 1.69 16 10 C 0.09 1.90 4.41 -70.14 -0.31 1.59 16 11 C 0.16 3.86 6.93 -2.84 -0.02 3.84 16 12 N -0.61 -16.10 3.70 -177.88 -0.66 -16.75 16 13 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 14 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -27.75 11.39 55.49 0.63 -27.12 16 17 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.11 2.37 8.43 -2.97 -0.03 2.35 16 22 N -0.25 -3.23 8.76 33.42 0.29 -2.94 16 23 N -0.39 -3.47 6.83 33.50 0.23 -3.24 16 24 H 0.44 2.25 8.96 -190.44 -1.71 0.54 16 25 H 0.05 0.30 8.14 -51.92 -0.42 -0.13 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.18 6.13 -51.93 -0.32 0.86 16 33 H 0.09 1.22 5.35 -51.93 -0.28 0.94 16 34 H 0.12 2.66 7.20 -51.93 -0.37 2.29 16 35 H 0.03 0.79 6.70 -51.93 -0.35 0.45 16 36 H 0.08 2.11 7.17 -51.93 -0.37 1.73 16 37 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.74 6.93 -51.93 -0.36 0.38 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -34.69 323.09 -8.35 -43.04 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.69 Total: -1.68 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.54 Total: 9.05 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.05 Total: -61.34 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.69 -8.35 -43.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042493519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.236 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds