Wall clock time and date at job start Tue Mar 31 2020 00:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46655 * 2 1 4 4 C 1.35363 * 126.38899 * 85.00542 * 3 2 1 5 5 C 1.41495 * 105.50789 * 179.97438 * 4 3 2 6 6 C 1.47714 * 126.52293 * 179.97438 * 5 4 3 7 7 O 1.21569 * 119.99353 * 353.45555 * 6 5 4 8 8 N 1.34778 * 120.00180 * 173.45268 * 6 5 4 9 9 C 1.46498 * 120.00074 * 3.53781 * 8 6 5 10 10 C 1.46497 * 119.99710 * 183.53226 * 8 6 5 11 11 C 1.53946 * 113.74127 * 218.73996 * 10 8 6 12 12 N 1.47811 * 86.03794 * 222.08945 * 11 10 8 13 13 C 1.36935 * 134.45450 * 204.65312 * 12 11 10 14 14 H 1.07998 * 119.99847 * 179.87016 * 13 12 11 15 15 C 1.38811 * 120.00368 * 359.85693 * 13 12 11 16 16 N 1.31620 * 119.99895 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00259 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47068 * 90.00219 * 17 15 13 19 19 H 1.48502 * 109.47111 * 210.00229 * 17 15 13 20 20 H 1.48492 * 109.46897 * 330.00191 * 17 15 13 21 21 C 1.47576 * 91.05238 * 24.54771 * 12 11 10 22 22 N 1.31815 * 106.96457 * 359.97438 * 5 4 3 23 23 N 1.28472 * 110.07134 * 359.76174 * 22 5 4 24 24 H 0.96993 * 124.89221 * 180.23700 * 23 22 5 25 25 H 1.09007 * 109.47248 * 60.00382 * 1 2 3 26 26 H 1.09000 * 109.46632 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47366 * 300.00143 * 1 2 3 28 28 H 1.08999 * 109.46822 * 120.00035 * 2 1 3 29 29 H 1.08996 * 109.46499 * 240.00059 * 2 1 3 30 30 H 1.08002 * 127.24680 * 359.92659 * 4 3 2 31 31 H 1.09002 * 109.47259 * 84.08778 * 9 8 6 32 32 H 1.08991 * 109.46902 * 204.09115 * 9 8 6 33 33 H 1.09000 * 109.46994 * 324.08659 * 9 8 6 34 34 H 1.08994 * 112.94633 * 350.33871 * 10 8 6 35 35 H 1.08994 * 113.76982 * 336.35640 * 11 10 8 36 36 H 1.09005 * 113.76759 * 107.74670 * 11 10 8 37 37 H 0.97002 * 120.00682 * 179.97438 * 16 15 13 38 38 H 1.08999 * 113.77589 * 221.15300 * 21 12 11 39 39 H 1.09004 * 113.76798 * 89.75240 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2105 2.2096 1.0855 5 6 2.6930 3.4412 0.5832 6 6 3.0421 4.6377 1.3759 7 8 2.8123 4.6644 2.5694 8 7 3.6155 5.6998 0.7761 9 6 3.8218 5.6989 -0.6743 10 6 4.0324 6.8551 1.5745 11 6 3.7734 8.2087 0.8884 12 7 5.1087 8.6005 1.3866 13 6 5.7115 9.7954 1.6765 14 1 6.7282 9.8131 2.0402 15 6 5.0158 10.9840 1.5027 16 7 3.7766 10.9624 1.0597 17 14 5.8383 12.6140 1.8975 18 1 6.5254 13.1281 0.6856 19 1 4.8117 13.5928 2.3372 20 1 6.8315 12.4169 2.9836 21 6 5.5302 7.1876 1.4486 22 7 2.7718 3.3179 -0.7268 23 7 2.3946 2.1424 -1.0825 24 1 2.3707 1.8204 -1.9971 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.0229 1.9531 2.1178 31 1 2.9084 6.0255 -1.1714 32 1 4.6355 6.3789 -0.9259 33 1 4.0749 4.6914 -1.0046 34 1 3.6780 6.8102 2.6043 35 1 3.7109 8.1457 -0.1980 36 1 2.9543 8.7758 1.3306 37 1 3.2902 11.7929 0.9386 38 1 6.1112 6.9410 2.3372 39 1 5.9850 6.8240 0.5271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042493519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:04 Heat of formation + Delta-G solvation = 81.078834 kcal Electronic energy + Delta-G solvation = -21372.925045 eV Core-core repulsion = 18125.689386 eV Total energy + Delta-G solvation = -3247.235659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.70641 -41.05509 -39.16352 -36.04718 -35.10191 -34.03680 -32.77573 -30.38616 -29.53964 -27.93526 -26.64388 -26.09716 -24.62420 -23.95814 -22.00188 -21.03178 -19.91126 -18.93984 -18.69297 -17.72724 -17.35688 -17.02176 -16.82261 -15.93160 -15.73841 -15.26560 -15.15823 -14.83699 -14.58546 -14.22641 -13.87227 -13.64567 -13.41358 -13.28949 -13.21215 -13.17048 -12.82808 -12.56696 -12.42694 -12.11882 -11.98503 -11.93712 -11.57561 -11.52351 -11.13566 -10.87835 -10.41285 -9.92959 -9.57441 -8.98002 -7.92970 -5.28118 0.50430 1.13209 1.45635 1.48561 1.57425 1.77066 2.16113 2.30798 2.48704 3.22836 3.30328 3.41858 3.71331 3.79793 3.95544 4.19910 4.28619 4.38518 4.45750 4.50146 4.56189 4.69344 4.71532 4.75015 4.83974 4.85636 4.99684 5.11254 5.18070 5.21054 5.24674 5.35089 5.43983 5.44921 5.66744 5.86923 6.15061 6.39694 6.84502 6.87478 7.11321 7.56134 8.49578 9.24232 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.053318 B = 0.003235 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.020131 B = 8654.075908 C = 8746.516798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 C 0.040 3.960 4 C -0.200 4.200 5 C -0.030 4.030 6 C 0.590 3.410 7 O -0.578 6.578 8 N -0.587 5.587 9 C 0.082 3.918 10 C 0.112 3.888 11 C 0.162 3.838 12 N -0.635 5.635 13 C -0.237 4.237 14 H 0.088 0.912 15 C -0.067 4.067 16 N -0.954 5.954 17 Si 0.985 3.015 18 H -0.283 1.283 19 H -0.294 1.294 20 H -0.267 1.267 21 C 0.117 3.883 22 N -0.260 5.260 23 N -0.364 5.364 24 H 0.461 0.539 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.047 0.953 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.159 0.841 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.527 -25.346 -7.850 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 C -0.087 4.087 4 C -0.228 4.228 5 C -0.189 4.189 6 C 0.379 3.621 7 O -0.457 6.457 8 N -0.318 5.318 9 C -0.061 4.061 10 C 0.007 3.993 11 C 0.036 3.964 12 N -0.362 5.362 13 C -0.365 4.365 14 H 0.106 0.894 15 C -0.260 4.260 16 N -0.602 5.602 17 Si 0.813 3.187 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.192 1.192 21 C -0.009 4.009 22 N -0.097 5.097 23 N -0.081 5.081 24 H 0.310 0.690 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.177 0.823 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.298 -24.367 -8.124 26.043 hybrid contribution 0.001 0.960 0.442 1.057 sum -4.297 -23.408 -7.683 25.008 Atomic orbital electron populations 1.21790 0.93817 1.03185 1.01972 1.20291 0.96394 0.86281 1.05899 1.21849 1.02932 0.97836 0.86084 1.21647 1.07997 0.92231 1.00932 1.21632 1.10102 0.96488 0.90673 1.17509 0.76831 0.81844 0.85957 1.90731 1.56406 1.82315 1.16213 1.47851 1.58485 1.15855 1.09572 1.22153 1.01716 1.04653 0.77533 1.23429 0.95760 0.84050 0.96048 1.22511 0.89070 0.88982 0.95832 1.46010 1.13019 1.01019 1.76158 1.19414 0.97309 0.82868 1.36865 0.89407 1.25712 0.97151 1.01214 1.01926 1.70018 1.11183 1.26495 1.52523 0.84986 0.77122 0.78647 0.77993 1.20987 1.22045 1.19205 1.23060 0.94493 0.83715 0.99630 1.73669 1.18623 1.03468 1.13958 1.43560 1.45726 1.07820 1.10969 0.69017 0.92791 0.89932 0.93349 0.88050 0.87760 0.82338 0.92438 0.91346 0.87388 0.88437 0.94597 0.94136 0.94109 0.92614 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 71.98 0.71 -0.38 16 2 C -0.05 -0.34 6.49 29.85 0.19 -0.14 16 3 C 0.04 0.60 6.48 41.40 0.27 0.87 16 4 C -0.20 -4.74 10.73 22.41 0.24 -4.50 16 5 C -0.03 -0.89 6.82 42.45 0.29 -0.60 16 6 C 0.59 22.19 7.68 86.75 0.67 22.85 16 7 O -0.58 -25.50 16.40 -3.93 -0.06 -25.57 16 8 N -0.59 -21.75 3.09 -831.90 -2.57 -24.33 16 9 C 0.08 2.48 8.33 127.77 1.06 3.54 16 10 C 0.11 4.88 4.41 46.75 0.21 5.09 16 11 C 0.16 8.23 6.93 86.44 0.60 8.83 16 12 N -0.63 -34.25 3.70 -716.68 -2.65 -36.90 16 13 C -0.24 -13.70 10.70 84.03 0.90 -12.80 16 14 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 16 N -0.95 -59.08 11.39 21.65 0.25 -58.84 16 17 Si 0.99 46.67 29.55 68.60 2.03 48.70 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 19 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.12 5.09 8.43 86.49 0.73 5.82 16 22 N -0.26 -6.10 8.76 -48.17 -0.42 -6.52 16 23 N -0.36 -5.38 6.83 -47.93 -0.33 -5.71 16 24 H 0.46 2.84 8.96 -220.00 -1.97 0.87 16 25 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.14 6.13 -2.39 -0.01 2.13 16 33 H 0.11 2.84 5.35 -2.39 -0.01 2.83 16 34 H 0.10 4.65 7.20 -2.39 -0.02 4.64 16 35 H 0.04 1.79 6.70 -2.39 -0.02 1.77 16 36 H 0.04 2.33 7.17 -2.38 -0.02 2.31 16 37 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.31 6.93 -2.39 -0.02 2.29 16 Total: -1.00 -77.20 323.09 1.67 -75.53 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -0.90 Total: 8.51 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 6.34 Total: 25.13 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -5.73 Total: -132.30 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -77.20 1.67 -75.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042493519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.612 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds