Wall clock time and date at job start Tue Mar 31 2020 00:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47032 * 2 1 4 4 N 1.30452 * 125.99016 * 270.14794 * 3 2 1 5 5 N 1.39933 * 108.89829 * 180.26334 * 4 3 2 6 6 H 0.97003 * 125.75198 * 179.73378 * 5 4 3 7 7 C 1.34253 * 108.49280 * 359.74608 * 5 4 3 8 8 C 1.38040 * 107.41827 * 0.02562 * 7 5 4 9 9 C 1.47431 * 126.41780 * 179.97438 * 8 7 5 10 10 O 1.21606 * 119.99897 * 215.29366 * 9 8 7 11 11 N 1.34777 * 119.99704 * 35.29489 * 9 8 7 12 12 C 1.46498 * 120.00317 * 355.72563 * 11 9 8 13 13 C 1.46502 * 119.99794 * 175.72222 * 11 9 8 14 14 C 1.53943 * 113.83771 * 141.35358 * 13 11 9 15 15 N 1.47582 * 86.11750 * 90.75187 * 14 13 11 16 16 C 1.36930 * 134.49264 * 204.63832 * 15 14 13 17 17 H 1.08002 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00135 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00208 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47230 * 90.00053 * 20 18 16 22 22 H 1.48503 * 109.47238 * 209.99816 * 20 18 16 23 23 H 1.48499 * 109.47007 * 329.99497 * 20 18 16 24 24 C 1.47586 * 91.01359 * 24.64175 * 15 14 13 25 25 H 1.09004 * 109.47147 * 299.99903 * 1 2 3 26 26 H 1.09000 * 109.47564 * 60.00128 * 1 2 3 27 27 H 1.09001 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46756 * 239.99890 * 2 1 3 29 29 H 1.08994 * 109.46972 * 120.00229 * 2 1 3 30 30 H 1.07997 * 126.29060 * 179.97438 * 7 5 4 31 31 H 1.09007 * 109.46671 * 275.29320 * 12 11 9 32 32 H 1.09000 * 109.47179 * 35.28981 * 12 11 9 33 33 H 1.08992 * 109.47058 * 155.28998 * 12 11 9 34 34 H 1.09005 * 112.94433 * 9.66854 * 13 11 9 35 35 H 1.09007 * 113.76714 * 205.05380 * 14 13 11 36 36 H 1.08997 * 113.76663 * 336.44554 * 14 13 11 37 37 H 0.96997 * 120.00144 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.76347 * 221.06008 * 24 15 14 39 39 H 1.08991 * 113.77067 * 89.66187 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2853 2.1444 -1.0555 5 7 2.7378 3.4031 -0.6443 6 1 2.9987 4.1308 -1.2302 7 6 2.7502 3.4335 0.6979 8 6 2.3095 2.2035 1.1432 9 6 2.1609 1.7832 2.5485 10 8 2.3953 0.6333 2.8673 11 7 1.7654 2.6736 3.4798 12 6 1.5735 4.0793 3.1146 13 6 1.5272 2.2355 4.8574 14 6 1.9971 3.2444 5.9210 15 7 0.6362 3.8097 5.8414 16 6 0.0898 5.0369 6.1068 17 1 -0.9680 5.1999 5.9622 18 6 0.8957 6.0720 6.5608 19 7 2.1849 5.8737 6.7366 20 14 0.1505 7.7463 6.9222 21 1 -0.2876 7.7975 8.3401 22 1 1.1655 8.8028 6.6794 23 1 -1.0187 7.9698 6.0344 24 6 0.1007 2.5212 5.3608 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0507 4.2669 1.3156 31 1 2.5290 4.6015 3.1653 32 1 1.1793 4.1406 2.1003 33 1 0.8696 4.5415 3.8065 34 1 1.8617 1.2148 5.0426 35 1 2.2287 2.7907 6.8848 36 1 2.7756 3.9218 5.5703 37 1 2.7480 6.5969 7.0541 38 1 -0.6350 2.6215 4.5627 39 1 -0.2248 1.8552 6.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043198646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:02 Heat of formation + Delta-G solvation = 103.065859 kcal Electronic energy + Delta-G solvation = -22252.690846 eV Core-core repulsion = 19006.408616 eV Total energy + Delta-G solvation = -3246.282230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.42846 -39.34479 -37.38270 -34.41070 -33.83183 -32.14093 -30.29219 -30.13672 -27.81060 -26.17778 -24.78286 -24.10354 -23.72784 -22.12284 -20.60888 -19.33594 -18.49480 -17.47726 -16.84306 -16.30334 -15.30456 -15.22596 -14.83627 -14.66463 -14.43230 -13.96329 -13.77814 -13.51352 -13.08713 -12.65815 -12.45323 -12.37528 -12.20171 -11.58441 -11.36910 -11.34099 -11.26884 -11.13075 -10.90503 -10.73237 -10.60033 -10.14861 -9.79317 -9.56617 -9.52224 -9.45058 -8.83648 -8.66798 -7.94340 -6.91325 -5.83735 -3.16836 1.64001 2.27657 2.69486 3.32948 3.39125 3.40410 3.43449 3.69158 4.39245 4.51417 4.71998 5.10451 5.11411 5.23756 5.39976 5.42394 5.46474 5.52856 5.61522 5.70315 5.79433 5.96169 6.14391 6.16403 6.17860 6.21820 6.26393 6.48040 6.50430 6.56288 6.75360 6.98171 7.08897 7.17941 7.34209 7.52365 7.57211 7.90031 8.05232 8.69566 8.97827 9.63460 10.53026 11.32237 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004914 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.697542 B = 5696.620812 C = 6211.518763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.133 3.867 4 N -0.304 5.304 5 N -0.467 5.467 6 H 0.442 0.558 7 C 0.101 3.899 8 C -0.275 4.275 9 C 0.589 3.411 10 O -0.553 6.553 11 N -0.573 5.573 12 C 0.067 3.933 13 C 0.090 3.910 14 C 0.153 3.847 15 N -0.608 5.608 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.105 3.895 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.191 0.809 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.046 0.954 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -5.348 -13.024 14.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 C -0.035 4.035 4 N -0.127 5.127 5 N -0.172 5.172 6 H 0.286 0.714 7 C -0.050 4.050 8 C -0.290 4.290 9 C 0.377 3.623 10 O -0.433 6.433 11 N -0.303 5.303 12 C -0.076 4.076 13 C -0.015 4.015 14 C 0.027 3.973 15 N -0.336 5.336 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.022 4.022 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.207 0.793 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.505 -5.555 -14.018 15.087 hybrid contribution -0.179 1.723 1.069 2.035 sum 0.326 -3.832 -12.949 13.508 Atomic orbital electron populations 1.21665 0.94166 1.02022 1.02114 1.20128 0.96234 0.88394 1.04360 1.22372 0.95707 0.96697 0.88757 1.77066 1.22149 0.90894 1.22543 1.46069 1.52213 1.13415 1.05529 0.71410 1.23517 0.97378 0.98877 0.85242 1.20274 1.18689 0.95206 0.94797 1.17306 0.76599 0.84872 0.83505 1.90691 1.52059 1.19083 1.81425 1.47237 1.65331 1.09066 1.08635 1.22216 1.02893 0.81237 1.01239 1.22893 0.97983 0.99003 0.81609 1.22637 0.90434 0.91018 0.93219 1.46195 1.04787 1.05025 1.77555 1.19001 0.93005 0.84886 1.38352 0.90320 1.24750 0.95700 0.98096 1.01547 1.69818 1.03454 1.31810 1.51388 0.86194 0.77919 0.83822 0.78263 1.21649 1.21685 1.20642 1.23033 0.94746 0.88478 0.95935 0.92345 0.92805 0.91864 0.90498 0.88028 0.79266 0.93349 0.92968 0.86230 0.88635 0.94508 0.90333 0.93609 0.93573 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.89 37.16 0.37 -1.26 16 2 C -0.05 -0.66 6.30 -27.89 -0.18 -0.84 16 3 C 0.13 1.93 6.51 -82.02 -0.53 1.40 16 4 N -0.30 -4.18 12.63 33.89 0.43 -3.75 16 5 N -0.47 -5.08 7.29 30.85 0.22 -4.86 16 6 H 0.44 3.08 8.96 -182.72 -1.64 1.45 16 7 C 0.10 1.23 9.72 -16.57 -0.16 1.07 16 8 C -0.27 -4.20 5.44 -105.07 -0.57 -4.78 16 9 C 0.59 10.54 7.50 -12.52 -0.09 10.45 16 10 O -0.55 -11.13 15.00 5.27 0.08 -11.05 16 11 N -0.57 -10.41 3.09 -177.01 -0.55 -10.95 16 12 C 0.07 1.14 8.05 59.85 0.48 1.62 16 13 C 0.09 1.75 4.53 -70.14 -0.32 1.44 16 14 C 0.15 3.45 6.77 -2.98 -0.02 3.43 16 15 N -0.61 -14.46 2.26 -178.09 -0.40 -14.86 16 16 C -0.23 -5.84 9.69 -15.06 -0.15 -5.99 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 19 N -0.92 -25.45 11.38 55.49 0.63 -24.81 16 20 Si 0.91 20.94 29.55 -169.99 -5.02 15.91 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.10 2.11 8.38 -2.97 -0.02 2.08 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.10 1.44 6.64 -51.93 -0.34 1.10 16 30 H 0.19 1.90 6.10 -52.49 -0.32 1.58 16 31 H 0.05 0.79 7.29 -51.93 -0.38 0.42 16 32 H 0.05 0.76 5.83 -51.93 -0.30 0.46 16 33 H 0.12 2.47 5.11 -51.93 -0.27 2.21 16 34 H 0.10 1.83 7.20 -51.93 -0.37 1.46 16 35 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.08 1.93 6.90 -51.93 -0.36 1.58 16 37 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -31.37 317.99 -7.60 -38.97 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.49 Total: 2.18 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.29 Total: 8.43 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.33 Total: -59.24 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.37 -7.60 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043198646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.033 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds