Wall clock time and date at job start Tue Mar 31 2020 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47032 * 2 1 4 4 N 1.30452 * 125.99016 * 270.14794 * 3 2 1 5 5 N 1.39933 * 108.89829 * 180.26334 * 4 3 2 6 6 H 0.97003 * 125.75198 * 179.73378 * 5 4 3 7 7 C 1.34253 * 108.49280 * 359.74608 * 5 4 3 8 8 C 1.38040 * 107.41827 * 0.02562 * 7 5 4 9 9 C 1.47431 * 126.41780 * 179.97438 * 8 7 5 10 10 O 1.21606 * 119.99897 * 215.29366 * 9 8 7 11 11 N 1.34777 * 119.99704 * 35.29489 * 9 8 7 12 12 C 1.46498 * 120.00317 * 355.72563 * 11 9 8 13 13 C 1.46502 * 119.99794 * 175.72222 * 11 9 8 14 14 C 1.53943 * 113.83771 * 141.35358 * 13 11 9 15 15 N 1.47582 * 86.11750 * 90.75187 * 14 13 11 16 16 C 1.36930 * 134.49264 * 204.63832 * 15 14 13 17 17 H 1.08002 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00135 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00040 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00208 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47230 * 90.00053 * 20 18 16 22 22 H 1.48503 * 109.47238 * 209.99816 * 20 18 16 23 23 H 1.48499 * 109.47007 * 329.99497 * 20 18 16 24 24 C 1.47586 * 91.01359 * 24.64175 * 15 14 13 25 25 H 1.09004 * 109.47147 * 299.99903 * 1 2 3 26 26 H 1.09000 * 109.47564 * 60.00128 * 1 2 3 27 27 H 1.09001 * 109.47390 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46756 * 239.99890 * 2 1 3 29 29 H 1.08994 * 109.46972 * 120.00229 * 2 1 3 30 30 H 1.07997 * 126.29060 * 179.97438 * 7 5 4 31 31 H 1.09007 * 109.46671 * 275.29320 * 12 11 9 32 32 H 1.09000 * 109.47179 * 35.28981 * 12 11 9 33 33 H 1.08992 * 109.47058 * 155.28998 * 12 11 9 34 34 H 1.09005 * 112.94433 * 9.66854 * 13 11 9 35 35 H 1.09007 * 113.76714 * 205.05380 * 14 13 11 36 36 H 1.08997 * 113.76663 * 336.44554 * 14 13 11 37 37 H 0.96997 * 120.00144 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.76347 * 221.06008 * 24 15 14 39 39 H 1.08991 * 113.77067 * 89.66187 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2853 2.1444 -1.0555 5 7 2.7378 3.4031 -0.6443 6 1 2.9987 4.1308 -1.2302 7 6 2.7502 3.4335 0.6979 8 6 2.3095 2.2035 1.1432 9 6 2.1609 1.7832 2.5485 10 8 2.3953 0.6333 2.8673 11 7 1.7654 2.6736 3.4798 12 6 1.5735 4.0793 3.1146 13 6 1.5272 2.2355 4.8574 14 6 1.9971 3.2444 5.9210 15 7 0.6362 3.8097 5.8414 16 6 0.0898 5.0369 6.1068 17 1 -0.9680 5.1999 5.9622 18 6 0.8957 6.0720 6.5608 19 7 2.1849 5.8737 6.7366 20 14 0.1505 7.7463 6.9222 21 1 -0.2876 7.7975 8.3401 22 1 1.1655 8.8028 6.6794 23 1 -1.0187 7.9698 6.0344 24 6 0.1007 2.5212 5.3608 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.0507 4.2669 1.3156 31 1 2.5290 4.6015 3.1653 32 1 1.1793 4.1406 2.1003 33 1 0.8696 4.5415 3.8065 34 1 1.8617 1.2148 5.0426 35 1 2.2287 2.7907 6.8848 36 1 2.7756 3.9218 5.5703 37 1 2.7480 6.5969 7.0541 38 1 -0.6350 2.6215 4.5627 39 1 -0.2248 1.8552 6.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043198646.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:01 Heat of formation + Delta-G solvation = 82.928079 kcal Electronic energy + Delta-G solvation = -22253.564086 eV Core-core repulsion = 19006.408616 eV Total energy + Delta-G solvation = -3247.155470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50681 -40.85104 -38.96003 -35.70039 -35.06852 -34.03589 -31.36344 -31.27143 -29.57933 -27.66382 -26.51990 -25.42957 -24.96206 -23.56824 -21.88995 -20.45653 -19.96865 -18.82808 -18.50290 -17.75968 -16.93882 -16.56516 -16.40669 -15.78682 -15.60602 -15.56928 -15.05635 -14.91317 -14.48280 -14.18832 -13.95023 -13.71145 -13.28538 -13.17502 -13.00216 -12.88548 -12.71174 -12.40166 -12.37168 -12.14596 -11.94922 -11.78920 -11.55386 -11.42104 -10.97584 -10.68972 -10.50354 -9.79305 -9.44145 -8.82689 -7.84027 -5.17619 0.59658 1.12791 1.50157 1.52310 1.59581 1.76921 2.09925 2.34429 2.51056 3.32178 3.44336 3.47760 3.73824 3.89037 4.08268 4.16485 4.43209 4.44271 4.47100 4.50342 4.52713 4.64921 4.73537 4.78945 4.82888 4.94714 5.06233 5.13827 5.19350 5.27648 5.29254 5.39661 5.46940 5.54393 5.81588 5.95933 6.26381 6.52653 6.65219 6.97260 7.28891 7.65819 8.60426 9.31649 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.004914 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.697542 B = 5696.620812 C = 6211.518763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.124 3.876 4 N -0.315 5.315 5 N -0.447 5.447 6 H 0.460 0.540 7 C 0.123 3.877 8 C -0.309 4.309 9 C 0.591 3.409 10 O -0.581 6.581 11 N -0.577 5.577 12 C 0.077 3.923 13 C 0.108 3.892 14 C 0.155 3.845 15 N -0.625 5.625 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.053 4.053 19 N -0.947 5.947 20 Si 0.969 3.031 21 H -0.295 1.295 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.110 3.890 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.213 0.787 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.248 0.752 38 H 0.053 0.947 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -4.896 -14.697 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 C -0.044 4.044 4 N -0.138 5.138 5 N -0.153 5.153 6 H 0.309 0.691 7 C -0.030 4.030 8 C -0.324 4.324 9 C 0.382 3.618 10 O -0.462 6.462 11 N -0.307 5.307 12 C -0.065 4.065 13 C 0.003 3.997 14 C 0.029 3.971 15 N -0.352 5.352 16 C -0.355 4.355 17 H 0.099 0.901 18 C -0.247 4.247 19 N -0.595 5.595 20 Si 0.798 3.202 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.193 1.193 24 C -0.016 4.016 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.230 0.770 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.097 -5.102 -15.743 16.549 hybrid contribution 0.014 1.559 1.536 2.188 sum -0.083 -3.543 -14.207 14.643 Atomic orbital electron populations 1.21617 0.93253 1.03054 1.01365 1.20151 0.96986 0.87811 1.04233 1.22597 0.95748 0.97374 0.88635 1.77037 1.22571 0.91813 1.22391 1.46099 1.50578 1.13186 1.05475 0.69118 1.23739 0.95297 0.98232 0.85752 1.20169 1.21747 0.97022 0.93453 1.17620 0.75590 0.84275 0.84352 1.90669 1.53233 1.20237 1.82055 1.47275 1.65614 1.09674 1.08094 1.22106 1.02367 0.80325 1.01733 1.22586 0.97065 0.98197 0.81857 1.22510 0.89586 0.91294 0.93758 1.46368 1.05631 1.05678 1.77517 1.19277 0.93142 0.85935 1.37167 0.90105 1.25410 0.96050 1.01090 1.02156 1.69983 1.04508 1.32315 1.52731 0.85231 0.77342 0.79997 0.77638 1.22261 1.22142 1.19312 1.23120 0.95212 0.86954 0.96280 0.94203 0.92259 0.90023 0.88876 0.89806 0.77019 0.92885 0.90227 0.89511 0.88193 0.95553 0.92679 0.94314 0.92840 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.89 71.98 0.71 -2.21 16 2 C -0.05 -1.29 6.30 29.85 0.19 -1.10 16 3 C 0.12 3.42 6.51 43.51 0.28 3.71 16 4 N -0.32 -7.92 12.63 -46.68 -0.59 -8.51 16 5 N -0.45 -8.36 7.29 -56.32 -0.41 -8.78 16 6 H 0.46 4.82 8.96 -213.42 -1.91 2.91 16 7 C 0.12 2.66 9.72 84.28 0.82 3.48 16 8 C -0.31 -8.96 5.44 -20.15 -0.11 -9.07 16 9 C 0.59 20.74 7.50 86.66 0.65 21.39 16 10 O -0.58 -23.30 15.00 -4.05 -0.06 -23.36 16 11 N -0.58 -20.55 3.09 -832.20 -2.57 -23.13 16 12 C 0.08 2.55 8.05 127.77 1.03 3.57 16 13 C 0.11 4.20 4.53 46.75 0.21 4.42 16 14 C 0.15 7.08 6.77 86.48 0.59 7.66 16 15 N -0.62 -29.68 2.26 -717.34 -1.62 -31.30 16 16 C -0.23 -11.74 9.69 84.03 0.81 -10.92 16 17 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.05 -2.81 5.50 84.86 0.47 -2.34 16 19 N -0.95 -53.15 11.38 21.65 0.25 -52.90 16 20 Si 0.97 42.97 29.55 68.60 2.03 45.00 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 C 0.11 4.35 8.38 86.48 0.72 5.08 16 25 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.08 2.36 6.64 -2.39 -0.02 2.35 16 30 H 0.21 3.57 6.10 -2.91 -0.02 3.55 16 31 H 0.05 1.68 7.29 -2.38 -0.02 1.66 16 32 H 0.08 2.14 5.83 -2.39 -0.01 2.13 16 33 H 0.09 3.53 5.11 -2.39 -0.01 3.52 16 34 H 0.10 3.82 7.20 -2.38 -0.02 3.80 16 35 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 2.77 6.90 -2.39 -0.02 2.76 16 37 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -66.99 317.99 2.56 -64.43 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.83 Total: 14.89 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 6.37 Total: 23.65 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -4.95 Total: -124.61 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -66.99 2.56 -64.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043198646.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.356 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds