Wall clock time and date at job start Tue Mar 31 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47213 * 2 1 4 4 N 1.33320 * 126.10449 * 269.97494 * 3 2 1 5 5 C 1.30856 * 109.68276 * 180.02562 * 4 3 2 6 6 N 1.34494 * 109.16277 * 359.72632 * 5 4 3 7 7 H 0.96998 * 126.47417 * 180.28692 * 6 5 4 8 8 C 1.36656 * 126.10691 * 89.99928 * 3 2 1 9 9 C 1.46770 * 126.84669 * 359.97438 * 8 3 2 10 10 O 1.21675 * 120.00064 * 256.55354 * 9 8 3 11 11 N 1.34780 * 119.99550 * 76.55367 * 9 8 3 12 12 C 1.46501 * 120.00002 * 355.02166 * 11 9 8 13 13 C 1.46492 * 119.99665 * 175.02521 * 11 9 8 14 14 C 1.53951 * 113.84144 * 141.35035 * 13 11 9 15 15 N 1.47579 * 86.11633 * 90.74907 * 14 13 11 16 16 C 1.36940 * 134.49590 * 204.63946 * 15 14 13 17 17 H 1.07996 * 120.00321 * 174.61951 * 16 15 14 18 18 C 1.38811 * 119.99517 * 354.62528 * 16 15 14 19 19 N 1.31616 * 120.00271 * 5.01420 * 18 16 15 20 20 Si 1.86799 * 119.99859 * 185.00983 * 18 16 15 21 21 H 1.48495 * 109.47134 * 94.99797 * 20 18 16 22 22 H 1.48501 * 109.47391 * 214.99985 * 20 18 16 23 23 H 1.48507 * 109.47090 * 334.99745 * 20 18 16 24 24 C 1.47584 * 91.01512 * 24.64490 * 15 14 13 25 25 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46736 * 300.00343 * 1 2 3 27 27 H 1.09000 * 109.46985 * 59.99984 * 1 2 3 28 28 H 1.08999 * 109.47112 * 239.99670 * 2 1 3 29 29 H 1.09000 * 109.46985 * 120.00016 * 2 1 3 30 30 H 1.07999 * 125.41654 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47022 * 274.56377 * 12 11 9 32 32 H 1.08993 * 109.47377 * 34.57134 * 12 11 9 33 33 H 1.09004 * 109.46491 * 154.56823 * 12 11 9 34 34 H 1.09001 * 112.94831 * 9.66286 * 13 11 9 35 35 H 1.08997 * 113.77165 * 205.04946 * 14 13 11 36 36 H 1.08998 * 113.76420 * 336.45216 * 14 13 11 37 37 H 0.96998 * 120.00136 * 179.97438 * 19 18 16 38 38 H 1.09002 * 113.76818 * 221.05637 * 24 15 14 39 39 H 1.09001 * 113.77085 * 89.65846 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2948 2.1614 -1.0772 5 6 2.7135 3.3446 -0.7072 6 7 2.7291 3.4074 0.6362 7 1 2.9932 4.1696 1.1748 8 6 2.3009 2.1801 1.1041 9 6 2.1569 1.7746 2.5073 10 8 1.2093 2.1694 3.1605 11 7 3.0745 0.9650 3.0722 12 6 4.1547 0.4019 2.2584 13 6 2.9915 0.6481 4.5001 14 6 3.3543 -0.8099 4.8360 15 7 4.7373 -0.3222 5.0012 16 6 5.9756 -0.9006 4.9155 17 1 6.8632 -0.2912 4.9997 18 6 6.0898 -2.2701 4.7203 19 7 5.0122 -2.9984 4.5190 20 14 7.7732 -3.0796 4.7433 21 1 8.0497 -3.6083 6.1031 22 1 7.7994 -4.1954 3.7636 23 1 8.8088 -2.0787 4.3812 24 6 4.2499 1.0393 5.2960 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.9974 4.1449 -1.3745 31 1 3.8079 -0.5120 1.7764 32 1 4.4508 1.1241 1.4977 33 1 5.0092 0.1747 2.8959 34 1 2.0610 0.9852 4.9568 35 1 2.9033 -1.1733 5.7593 36 1 3.2280 -1.4977 3.9999 37 1 5.0920 -3.9554 4.3822 38 1 4.8387 1.8278 4.8273 39 1 4.0620 1.2191 6.3545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044237859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:39 Heat of formation + Delta-G solvation = 86.210364 kcal Electronic energy + Delta-G solvation = -22420.907362 eV Core-core repulsion = 19173.894223 eV Total energy + Delta-G solvation = -3247.013140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.18388 -39.58500 -37.56361 -34.39295 -33.92989 -32.21115 -31.78600 -29.10731 -27.87122 -26.15865 -24.87395 -24.32465 -23.29734 -22.28262 -21.10641 -19.50869 -18.59515 -17.84389 -16.89639 -16.46832 -15.59906 -15.34121 -14.96182 -14.82860 -14.27299 -13.88061 -13.77758 -13.64599 -13.42171 -12.73613 -12.60095 -12.42954 -12.24514 -11.59070 -11.41510 -11.35890 -11.30641 -10.93109 -10.88451 -10.65311 -10.34737 -10.22451 -9.99240 -9.84879 -9.69113 -9.61797 -8.87173 -8.37647 -8.12980 -6.94837 -5.87317 -3.20227 1.73944 2.40346 2.97171 3.14436 3.33300 3.39156 3.41243 3.59162 4.37455 4.43467 4.77300 5.03077 5.06473 5.11792 5.39467 5.47146 5.52824 5.55661 5.71395 5.76231 5.88861 6.03871 6.09529 6.11053 6.18345 6.28079 6.35007 6.36709 6.45790 6.59581 6.68839 6.89893 7.11678 7.19839 7.24121 7.47690 7.78319 7.88160 7.95085 8.35934 8.94610 9.60738 10.48747 11.29124 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.005166 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.909936 B = 5419.105707 C = 5651.766004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.061 3.939 4 N -0.491 5.491 5 C 0.196 3.804 6 N -0.545 5.545 7 H 0.423 0.577 8 C -0.058 4.058 9 C 0.587 3.413 10 O -0.542 6.542 11 N -0.561 5.561 12 C 0.074 3.926 13 C 0.084 3.916 14 C 0.157 3.843 15 N -0.608 5.608 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.001 4.001 19 N -0.914 5.914 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.106 3.894 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.212 0.788 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.255 0.745 38 H 0.044 0.956 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.636 10.442 -8.137 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.072 4.072 4 N -0.210 5.210 5 C -0.087 4.087 6 N -0.149 5.149 7 H 0.262 0.738 8 C -0.175 4.175 9 C 0.372 3.628 10 O -0.420 6.420 11 N -0.291 5.291 12 C -0.068 4.068 13 C -0.020 4.020 14 C 0.031 3.969 15 N -0.335 5.335 16 C -0.358 4.358 17 H 0.098 0.902 18 C -0.198 4.198 19 N -0.560 5.560 20 Si 0.737 3.263 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.021 4.021 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.228 0.772 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.138 0.862 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.986 10.078 -8.646 14.183 hybrid contribution 1.312 0.219 1.158 1.764 sum -3.673 10.297 -7.488 13.251 Atomic orbital electron populations 1.21697 0.94512 1.01793 1.02079 1.19980 0.96083 0.89081 1.03534 1.20846 1.02603 0.96983 0.86731 1.69978 1.17914 1.02670 1.30483 1.24965 1.03760 0.98148 0.81844 1.43135 1.50431 1.12803 1.08535 0.73850 1.20704 1.13331 0.88187 0.95320 1.16983 0.82536 0.79550 0.83736 1.90797 1.31026 1.57027 1.63105 1.47363 1.26564 1.45800 1.09335 1.22052 0.92119 0.97099 0.95534 1.23046 0.98811 1.00606 0.79546 1.22580 0.83762 0.91251 0.99322 1.46155 1.01569 1.04899 1.80866 1.18972 0.82485 0.90642 1.43684 0.90244 1.24793 0.97164 0.95914 1.01949 1.69818 1.26675 1.05824 1.53669 0.86190 0.83395 0.79238 0.77468 1.21629 1.21634 1.20578 1.23017 0.92232 0.90222 0.96596 0.92095 0.92580 0.92631 0.90061 0.90180 0.77166 0.92631 0.93412 0.86223 0.88558 0.94153 0.90384 0.93460 0.93735 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.90 37.16 0.37 -1.50 16 2 C -0.05 -0.69 6.29 -27.88 -0.18 -0.86 16 3 C 0.06 0.92 6.22 -82.52 -0.51 0.41 16 4 N -0.49 -7.02 11.20 -10.65 -0.12 -7.14 16 5 C 0.20 2.11 13.01 -90.58 -1.18 0.94 16 6 N -0.55 -6.27 6.19 -10.79 -0.07 -6.34 16 7 H 0.42 3.62 8.96 -40.82 -0.37 3.26 16 8 C -0.06 -0.88 5.14 -82.14 -0.42 -1.30 16 9 C 0.59 10.33 7.16 -12.81 -0.09 10.24 16 10 O -0.54 -10.90 16.58 5.21 0.09 -10.82 16 11 N -0.56 -10.08 3.09 -177.26 -0.55 -10.63 16 12 C 0.07 1.33 8.98 59.85 0.54 1.87 16 13 C 0.08 1.61 4.53 -70.14 -0.32 1.29 16 14 C 0.16 3.49 6.70 -2.97 -0.02 3.47 16 15 N -0.61 -14.30 2.26 -178.08 -0.40 -14.71 16 16 C -0.23 -5.97 9.69 -15.06 -0.15 -6.12 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 19 N -0.91 -25.44 11.47 55.49 0.64 -24.80 16 20 Si 0.91 21.08 29.56 -169.99 -5.02 16.06 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.11 2.08 8.38 -2.97 -0.02 2.06 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.22 6.72 -51.93 -0.35 0.87 16 30 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.06 1.02 7.11 -51.93 -0.37 0.65 16 32 H 0.05 0.77 6.97 -51.93 -0.36 0.41 16 33 H 0.12 2.51 5.14 -51.93 -0.27 2.24 16 34 H 0.10 1.80 7.20 -51.93 -0.37 1.42 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.91 7.04 -51.93 -0.37 1.54 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -31.51 323.53 -8.02 -39.53 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.38 Total: 3.58 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -2.08 Total: 10.38 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.50 Total: -63.61 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.51 -8.02 -39.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044237859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.745 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds