Wall clock time and date at job start Tue Mar 31 2020 00:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50704 * 109.47213 * 2 1 4 4 N 1.33320 * 126.10449 * 269.97494 * 3 2 1 5 5 C 1.30856 * 109.68276 * 180.02562 * 4 3 2 6 6 N 1.34494 * 109.16277 * 359.72632 * 5 4 3 7 7 H 0.96998 * 126.47417 * 180.28692 * 6 5 4 8 8 C 1.36656 * 126.10691 * 89.99928 * 3 2 1 9 9 C 1.46770 * 126.84669 * 359.97438 * 8 3 2 10 10 O 1.21675 * 120.00064 * 256.55354 * 9 8 3 11 11 N 1.34780 * 119.99550 * 76.55367 * 9 8 3 12 12 C 1.46501 * 120.00002 * 355.02166 * 11 9 8 13 13 C 1.46492 * 119.99665 * 175.02521 * 11 9 8 14 14 C 1.53951 * 113.84144 * 141.35035 * 13 11 9 15 15 N 1.47579 * 86.11633 * 90.74907 * 14 13 11 16 16 C 1.36940 * 134.49590 * 204.63946 * 15 14 13 17 17 H 1.07996 * 120.00321 * 174.61951 * 16 15 14 18 18 C 1.38811 * 119.99517 * 354.62528 * 16 15 14 19 19 N 1.31616 * 120.00271 * 5.01420 * 18 16 15 20 20 Si 1.86799 * 119.99859 * 185.00983 * 18 16 15 21 21 H 1.48495 * 109.47134 * 94.99797 * 20 18 16 22 22 H 1.48501 * 109.47391 * 214.99985 * 20 18 16 23 23 H 1.48507 * 109.47090 * 334.99745 * 20 18 16 24 24 C 1.47584 * 91.01512 * 24.64490 * 15 14 13 25 25 H 1.08994 * 109.47118 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46736 * 300.00343 * 1 2 3 27 27 H 1.09000 * 109.46985 * 59.99984 * 1 2 3 28 28 H 1.08999 * 109.47112 * 239.99670 * 2 1 3 29 29 H 1.09000 * 109.46985 * 120.00016 * 2 1 3 30 30 H 1.07999 * 125.41654 * 179.97438 * 5 4 3 31 31 H 1.08995 * 109.47022 * 274.56377 * 12 11 9 32 32 H 1.08993 * 109.47377 * 34.57134 * 12 11 9 33 33 H 1.09004 * 109.46491 * 154.56823 * 12 11 9 34 34 H 1.09001 * 112.94831 * 9.66286 * 13 11 9 35 35 H 1.08997 * 113.77165 * 205.04946 * 14 13 11 36 36 H 1.08998 * 113.76420 * 336.45216 * 14 13 11 37 37 H 0.96998 * 120.00136 * 179.97438 * 19 18 16 38 38 H 1.09002 * 113.76818 * 221.05637 * 24 15 14 39 39 H 1.09001 * 113.77085 * 89.65846 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2948 2.1614 -1.0772 5 6 2.7135 3.3446 -0.7072 6 7 2.7291 3.4074 0.6362 7 1 2.9932 4.1696 1.1748 8 6 2.3009 2.1801 1.1041 9 6 2.1569 1.7746 2.5073 10 8 1.2093 2.1694 3.1605 11 7 3.0745 0.9650 3.0722 12 6 4.1547 0.4019 2.2584 13 6 2.9915 0.6481 4.5001 14 6 3.3543 -0.8099 4.8360 15 7 4.7373 -0.3222 5.0012 16 6 5.9756 -0.9006 4.9155 17 1 6.8632 -0.2912 4.9997 18 6 6.0898 -2.2701 4.7203 19 7 5.0122 -2.9984 4.5190 20 14 7.7732 -3.0796 4.7433 21 1 8.0497 -3.6083 6.1031 22 1 7.7994 -4.1954 3.7636 23 1 8.8088 -2.0787 4.3812 24 6 4.2499 1.0393 5.2960 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.9974 4.1449 -1.3745 31 1 3.8079 -0.5120 1.7764 32 1 4.4508 1.1241 1.4977 33 1 5.0092 0.1747 2.8959 34 1 2.0610 0.9852 4.9568 35 1 2.9033 -1.1733 5.7593 36 1 3.2280 -1.4977 3.9999 37 1 5.0920 -3.9554 4.3822 38 1 4.8387 1.8278 4.8273 39 1 4.0620 1.2191 6.3545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044237859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:38 Heat of formation + Delta-G solvation = 66.855626 kcal Electronic energy + Delta-G solvation = -22421.746647 eV Core-core repulsion = 19173.894223 eV Total energy + Delta-G solvation = -3247.852424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.21935 -41.09952 -39.16271 -35.75970 -35.19694 -34.05265 -32.90627 -30.37473 -29.54191 -27.71284 -26.58817 -25.72296 -24.61935 -23.58612 -22.31022 -20.83310 -19.92194 -19.20732 -18.62265 -17.91820 -17.01969 -16.82908 -16.46365 -16.06283 -15.67617 -15.41404 -15.19548 -14.83337 -14.56161 -14.48705 -14.14423 -13.93882 -13.37078 -13.21715 -13.11000 -13.00795 -12.78047 -12.43878 -12.40512 -12.04012 -11.97949 -11.68595 -11.57094 -11.48794 -11.01396 -10.96025 -10.78006 -9.66994 -9.45699 -8.86521 -7.88502 -5.21388 0.66871 1.15885 1.48400 1.50162 1.57871 1.79142 2.04115 2.42771 2.48488 3.25362 3.41422 3.47690 3.60451 3.82514 4.00865 4.23256 4.31812 4.39995 4.43667 4.47708 4.50969 4.65308 4.72135 4.77415 4.86365 4.88448 5.02734 5.06056 5.15100 5.24648 5.26536 5.28931 5.48688 5.53552 5.65091 5.91730 6.33720 6.41764 6.90265 6.93373 6.99046 7.62665 8.56120 9.27831 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021225 B = 0.005166 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.909936 B = 5419.105707 C = 5651.766004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C 0.057 3.943 4 N -0.524 5.524 5 C 0.226 3.774 6 N -0.536 5.536 7 H 0.438 0.562 8 C -0.088 4.088 9 C 0.596 3.404 10 O -0.569 6.569 11 N -0.563 5.563 12 C 0.093 3.907 13 C 0.103 3.897 14 C 0.157 3.843 15 N -0.626 5.626 16 C -0.229 4.229 17 H 0.084 0.916 18 C -0.054 4.054 19 N -0.945 5.945 20 Si 0.967 3.033 21 H -0.294 1.294 22 H -0.297 1.297 23 H -0.267 1.267 24 C 0.114 3.886 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.248 0.752 38 H 0.056 0.944 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 12.527 -9.280 16.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C -0.076 4.076 4 N -0.244 5.244 5 C -0.057 4.057 6 N -0.141 5.141 7 H 0.279 0.721 8 C -0.205 4.205 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.292 5.292 12 C -0.050 4.050 13 C -0.002 4.002 14 C 0.031 3.969 15 N -0.353 5.353 16 C -0.357 4.357 17 H 0.102 0.898 18 C -0.248 4.248 19 N -0.593 5.593 20 Si 0.797 3.203 21 H -0.221 1.221 22 H -0.224 1.224 23 H -0.192 1.192 24 C -0.012 4.012 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.081 0.919 30 H 0.279 0.721 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.310 12.214 -9.774 16.226 hybrid contribution 1.078 -0.329 1.450 1.836 sum -3.232 11.885 -8.324 14.866 Atomic orbital electron populations 1.21628 0.93703 1.02566 1.01396 1.19993 0.96794 0.89190 1.03001 1.20961 1.02238 0.97217 0.87163 1.70007 1.19838 1.04176 1.30373 1.26007 0.99945 0.97942 0.81831 1.43122 1.49883 1.12061 1.09018 0.72125 1.20308 1.16308 0.90141 0.93779 1.17194 0.81500 0.78517 0.84530 1.90775 1.31926 1.57897 1.64255 1.47355 1.26910 1.46052 1.08879 1.21780 0.90855 0.97237 0.95100 1.22760 0.99050 0.97911 0.80498 1.22451 0.83771 0.92688 0.97976 1.46334 1.01278 1.06585 1.81144 1.19266 0.83626 0.90844 1.41975 0.89819 1.25472 1.00035 0.96614 1.02708 1.69984 1.28373 1.05435 1.55521 0.85230 0.80232 0.78176 0.76707 1.22106 1.22364 1.19167 1.23115 0.91945 0.88574 0.97594 0.90672 0.94344 0.92023 0.89320 0.91914 0.72065 0.93770 0.91407 0.88982 0.87730 0.95038 0.93140 0.94260 0.92536 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.90 71.98 0.71 -2.76 16 2 C -0.05 -1.45 6.29 29.85 0.19 -1.27 16 3 C 0.06 1.66 6.22 41.96 0.26 1.92 16 4 N -0.52 -13.67 11.20 -187.59 -2.10 -15.77 16 5 C 0.23 4.00 13.01 180.33 2.35 6.35 16 6 N -0.54 -10.73 6.19 -188.05 -1.16 -11.89 16 7 H 0.44 6.07 8.96 -92.71 -0.83 5.24 16 8 C -0.09 -2.54 5.14 40.01 0.21 -2.34 16 9 C 0.60 20.57 7.16 86.47 0.62 21.18 16 10 O -0.57 -22.61 16.58 -4.27 -0.07 -22.68 16 11 N -0.56 -20.06 3.09 -832.94 -2.58 -22.63 16 12 C 0.09 3.33 8.98 127.77 1.15 4.48 16 13 C 0.10 3.90 4.53 46.75 0.21 4.11 16 14 C 0.16 7.17 6.70 86.48 0.58 7.75 16 15 N -0.63 -29.52 2.26 -717.31 -1.62 -31.15 16 16 C -0.23 -11.86 9.69 84.03 0.81 -11.04 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 18 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 19 N -0.94 -53.99 11.47 21.65 0.25 -53.74 16 20 Si 0.97 43.66 29.56 68.60 2.03 45.69 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.11 4.32 8.38 86.48 0.72 5.04 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 1.97 6.72 -2.39 -0.02 1.95 16 30 H 0.26 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.04 1.66 7.11 -2.39 -0.02 1.65 16 32 H 0.07 2.12 6.97 -2.39 -0.02 2.11 16 33 H 0.09 3.87 5.14 -2.38 -0.01 3.86 16 34 H 0.10 3.84 7.20 -2.39 -0.02 3.82 16 35 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 2.57 7.04 -2.39 -0.02 2.56 16 37 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -68.40 323.53 3.26 -65.15 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.24 Total: 16.05 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 8.28 Total: 30.99 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -7.22 Total: -135.19 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.07 Total: -22.68 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -68.40 3.26 -65.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044237859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.002 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds