Wall clock time and date at job start Mon Mar 30 2020 23:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30495 * 125.64900 * 2 1 4 4 C 1.34132 * 109.25431 * 180.28932 * 3 2 1 5 5 C 1.34671 * 108.01879 * 359.73006 * 4 3 2 6 6 N 1.35039 * 125.64827 * 179.82173 * 2 1 3 7 7 C 1.46503 * 126.39876 * 359.97438 * 6 2 1 8 8 C 1.50694 * 109.47534 * 84.70816 * 7 6 2 9 9 O 1.21290 * 120.00051 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99829 * 0.02562 * 10 8 7 12 12 C 1.46504 * 120.00089 * 180.02562 * 10 8 7 13 13 C 1.53495 * 114.20492 * 120.00483 * 12 10 8 14 14 N 1.47064 * 87.98647 * 87.51761 * 13 12 10 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.07999 * 119.99903 * 6.59853 * 15 14 13 17 17 C 1.38814 * 120.00235 * 186.58664 * 15 14 13 18 18 N 1.31624 * 119.99708 * 6.45052 * 17 15 14 19 19 Si 1.86801 * 120.00252 * 186.44323 * 17 15 14 20 20 H 1.48498 * 109.47005 * 265.02404 * 19 17 15 21 21 H 1.48497 * 109.46829 * 25.02180 * 19 17 15 22 22 H 1.48501 * 109.47055 * 145.02388 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09006 * 109.47121 * 270.17478 * 1 2 3 25 25 H 1.09001 * 109.46980 * 30.17668 * 1 2 3 26 26 H 1.09001 * 109.46854 * 150.17859 * 1 2 3 27 27 H 1.07995 * 125.98944 * 179.72333 * 4 3 2 28 28 H 1.08002 * 126.58662 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47063 * 324.70589 * 7 6 2 30 30 H 1.09002 * 109.47253 * 204.70998 * 7 6 2 31 31 H 1.09001 * 109.47301 * 269.99894 * 11 10 8 32 32 H 1.09010 * 109.46951 * 29.99895 * 11 10 8 33 33 H 1.08999 * 109.47178 * 149.99412 * 11 10 8 34 34 H 1.09002 * 113.27922 * 346.93508 * 12 10 8 35 35 H 1.08996 * 113.46596 * 332.73658 * 13 12 10 36 36 H 1.09007 * 113.51449 * 202.30908 * 13 12 10 37 37 H 0.97002 * 119.99801 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 39 39 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6643 -0.0045 6 7 2.2941 -1.0973 0.0034 7 6 1.8425 -2.4910 0.0083 8 6 1.5625 -2.9334 -1.4048 9 8 1.7246 -2.1607 -2.3256 10 7 1.1328 -4.1879 -1.6457 11 6 0.9375 -5.1214 -0.5337 12 6 0.8611 -4.6181 -3.0195 13 6 1.7102 -5.8088 -3.4857 14 7 0.6829 -6.6962 -2.9202 15 6 0.6501 -7.9655 -2.4077 16 1 1.5696 -8.5128 -2.2617 17 6 -0.5650 -8.5489 -2.0758 18 7 -1.6917 -7.9354 -2.3700 19 14 -0.6011 -10.2046 -1.2117 20 1 -0.7604 -11.2848 -2.2181 21 1 0.6695 -10.4033 -0.4692 22 1 -1.7411 -10.2420 -0.2608 23 6 -0.2950 -5.6228 -3.1534 24 1 -0.3634 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3410 -0.0122 28 1 4.4777 -1.2832 -0.0087 29 1 0.9328 -2.5761 0.6027 30 1 2.6188 -3.1230 0.4397 31 1 1.8626 -5.6683 -0.3516 32 1 0.6614 -4.5660 0.3627 33 1 0.1431 -5.8243 -0.7846 34 1 0.8214 -3.7921 -3.7297 35 1 2.6725 -5.8805 -2.9789 36 1 1.7984 -5.8821 -4.5698 37 1 -2.5408 -8.3432 -2.1384 38 1 -0.7362 -5.6464 -4.1499 39 1 -1.0411 -5.5361 -2.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044300454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:34 Heat of formation + Delta-G solvation = 104.210037 kcal Electronic energy + Delta-G solvation = -21999.426765 eV Core-core repulsion = 18753.194150 eV Total energy + Delta-G solvation = -3246.232615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11279 -39.93080 -37.90701 -34.36421 -33.85240 -32.20513 -31.71462 -28.59908 -27.62024 -26.69652 -26.29368 -24.73044 -23.34001 -21.44007 -20.94461 -19.51074 -18.44252 -17.49695 -17.00554 -16.70675 -15.67349 -15.65602 -15.03471 -14.70156 -14.36103 -13.87993 -13.86962 -13.56614 -13.06107 -12.96632 -12.78338 -12.73132 -12.52669 -12.36314 -12.31230 -11.88073 -11.44768 -11.18922 -10.98091 -10.75772 -10.25765 -10.21880 -9.99229 -9.94971 -9.57304 -9.37565 -8.93095 -8.28360 -8.20144 -7.05252 -5.94600 -3.26445 1.98932 2.59513 2.62981 3.20139 3.27043 3.30442 3.33767 3.35551 4.31613 4.46382 4.50979 4.54101 4.77801 4.84630 5.10923 5.29053 5.30656 5.33618 5.43222 5.47396 5.50869 5.76485 5.86354 5.95875 5.98099 6.04309 6.29776 6.33338 6.39998 6.52451 6.73230 6.78859 6.99579 7.05879 7.18800 7.33861 7.68277 7.79782 8.14437 8.24976 8.87246 9.53256 10.47078 11.23289 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.003994 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.477418 B = 7008.840828 C = 7114.372166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.220 3.780 3 N -0.496 5.496 4 C -0.030 4.030 5 C -0.051 4.051 6 N -0.440 5.440 7 C 0.087 3.913 8 C 0.492 3.508 9 O -0.534 6.534 10 N -0.570 5.570 11 C 0.076 3.924 12 C 0.081 3.919 13 C 0.104 3.896 14 N -0.605 5.605 15 C -0.220 4.220 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.289 1.289 23 C 0.153 3.847 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.255 0.745 38 H 0.043 0.957 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 10.085 7.031 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.215 5.215 4 C -0.177 4.177 5 C -0.183 4.183 6 N -0.123 5.123 7 C -0.040 4.040 8 C 0.278 3.722 9 O -0.411 6.411 10 N -0.301 5.301 11 C -0.067 4.067 12 C -0.024 4.024 13 C -0.023 4.023 14 N -0.332 5.332 15 C -0.348 4.348 16 H 0.099 0.901 17 C -0.201 4.201 18 N -0.564 5.564 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.205 1.205 22 H -0.215 1.215 23 C 0.027 3.973 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.248 10.830 6.704 13.776 hybrid contribution 0.355 -2.176 0.209 2.214 sum 5.603 8.654 6.913 12.413 Atomic orbital electron populations 1.20186 0.85187 1.04320 1.03097 1.23214 0.95606 0.81160 1.04272 1.70223 1.02286 1.28121 1.20873 1.22185 0.94760 0.92643 1.08160 1.22619 0.86786 0.96906 1.12008 1.44898 1.06760 1.06080 1.54521 1.21751 1.03961 0.81350 0.96942 1.20560 0.78535 0.82455 0.90697 1.90749 1.52218 1.52830 1.45284 1.47347 1.63755 1.10832 1.08178 1.21986 1.04466 0.93625 0.86594 1.22783 1.00855 0.96585 0.82155 1.22834 0.94106 0.88700 0.96649 1.45886 1.04672 1.13160 1.69476 1.18925 0.92899 0.89136 1.33803 0.90125 1.24811 0.95139 0.98483 1.01700 1.69844 0.96627 1.39115 1.50824 0.86148 0.77215 0.83561 0.79118 1.21590 1.20491 1.21540 1.22399 0.92154 0.83199 0.99560 0.90277 0.89129 0.90894 0.81483 0.81143 0.86166 0.86088 0.92534 0.93033 0.86944 0.88199 0.94041 0.93940 0.93468 0.93930 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.04 36.01 0.36 -0.40 16 2 C 0.22 3.13 7.88 -155.42 -1.23 1.91 16 3 N -0.50 -7.77 11.25 -10.82 -0.12 -7.89 16 4 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 5 C -0.05 -0.64 11.58 -16.56 -0.19 -0.83 16 6 N -0.44 -5.83 2.24 -115.19 -0.26 -6.08 16 7 C 0.09 0.97 4.71 -5.20 -0.02 0.95 16 8 C 0.49 7.54 7.74 -10.99 -0.09 7.46 16 9 O -0.53 -10.21 15.93 5.55 0.09 -10.12 16 10 N -0.57 -9.16 3.12 -173.56 -0.54 -9.70 16 11 C 0.08 1.13 9.34 59.84 0.56 1.69 16 12 C 0.08 1.48 4.69 -67.68 -0.32 1.17 16 13 C 0.10 2.04 8.31 -8.51 -0.07 1.97 16 14 N -0.61 -13.95 2.47 -184.62 -0.46 -14.40 16 15 C -0.22 -5.58 10.34 -15.06 -0.16 -5.74 16 16 H 0.08 2.00 7.84 -52.49 -0.41 1.59 16 17 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 18 N -0.92 -25.06 11.81 55.49 0.66 -24.40 16 19 Si 0.91 20.44 29.56 -169.99 -5.02 15.42 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.15 3.29 6.25 -8.37 -0.05 3.24 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.80 7.84 -51.93 -0.41 0.40 16 27 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.12 1.07 7.20 -51.93 -0.37 0.69 16 30 H 0.12 1.07 8.10 -51.93 -0.42 0.65 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.57 6.44 -51.92 -0.33 0.23 16 33 H 0.11 2.15 5.38 -51.93 -0.28 1.87 16 34 H 0.10 1.83 7.29 -51.93 -0.38 1.45 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.55 6.71 -51.93 -0.35 1.20 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -32.39 326.03 -7.73 -40.12 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.47 Total: 1.57 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.51 Total: 10.58 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.72 Total: -62.49 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.39 -7.73 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044300454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.329 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds