Wall clock time and date at job start Mon Mar 30 2020 23:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30495 * 125.64900 * 2 1 4 4 C 1.34132 * 109.25431 * 180.28932 * 3 2 1 5 5 C 1.34671 * 108.01879 * 359.73006 * 4 3 2 6 6 N 1.35039 * 125.64827 * 179.82173 * 2 1 3 7 7 C 1.46503 * 126.39876 * 359.97438 * 6 2 1 8 8 C 1.50694 * 109.47534 * 84.70816 * 7 6 2 9 9 O 1.21290 * 120.00051 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99829 * 0.02562 * 10 8 7 12 12 C 1.46504 * 120.00089 * 180.02562 * 10 8 7 13 13 C 1.53495 * 114.20492 * 120.00483 * 12 10 8 14 14 N 1.47064 * 87.98647 * 87.51761 * 13 12 10 15 15 C 1.36929 * 136.05710 * 207.07951 * 14 13 12 16 16 H 1.07999 * 119.99903 * 6.59853 * 15 14 13 17 17 C 1.38814 * 120.00235 * 186.58664 * 15 14 13 18 18 N 1.31624 * 119.99708 * 6.45052 * 17 15 14 19 19 Si 1.86801 * 120.00252 * 186.44323 * 17 15 14 20 20 H 1.48498 * 109.47005 * 265.02404 * 19 17 15 21 21 H 1.48497 * 109.46829 * 25.02180 * 19 17 15 22 22 H 1.48501 * 109.47055 * 145.02388 * 19 17 15 23 23 C 1.47067 * 87.88549 * 27.33957 * 14 13 12 24 24 H 1.09006 * 109.47121 * 270.17478 * 1 2 3 25 25 H 1.09001 * 109.46980 * 30.17668 * 1 2 3 26 26 H 1.09001 * 109.46854 * 150.17859 * 1 2 3 27 27 H 1.07995 * 125.98944 * 179.72333 * 4 3 2 28 28 H 1.08002 * 126.58662 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47063 * 324.70589 * 7 6 2 30 30 H 1.09002 * 109.47253 * 204.70998 * 7 6 2 31 31 H 1.09001 * 109.47301 * 269.99894 * 11 10 8 32 32 H 1.09010 * 109.46951 * 29.99895 * 11 10 8 33 33 H 1.08999 * 109.47178 * 149.99412 * 11 10 8 34 34 H 1.09002 * 113.27922 * 346.93508 * 12 10 8 35 35 H 1.08996 * 113.46596 * 332.73658 * 13 12 10 36 36 H 1.09007 * 113.51449 * 202.30908 * 13 12 10 37 37 H 0.97002 * 119.99801 * 179.97438 * 18 17 15 38 38 H 1.09005 * 113.46771 * 87.43754 * 23 14 13 39 39 H 1.09002 * 113.46911 * 217.87594 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 -0.0064 5 6 3.5926 -0.6643 -0.0045 6 7 2.2941 -1.0973 0.0034 7 6 1.8425 -2.4910 0.0083 8 6 1.5625 -2.9334 -1.4048 9 8 1.7246 -2.1607 -2.3256 10 7 1.1328 -4.1879 -1.6457 11 6 0.9375 -5.1214 -0.5337 12 6 0.8611 -4.6181 -3.0195 13 6 1.7102 -5.8088 -3.4857 14 7 0.6829 -6.6962 -2.9202 15 6 0.6501 -7.9655 -2.4077 16 1 1.5696 -8.5128 -2.2617 17 6 -0.5650 -8.5489 -2.0758 18 7 -1.6917 -7.9354 -2.3700 19 14 -0.6011 -10.2046 -1.2117 20 1 -0.7604 -11.2848 -2.2181 21 1 0.6695 -10.4033 -0.4692 22 1 -1.7411 -10.2420 -0.2608 23 6 -0.2950 -5.6228 -3.1534 24 1 -0.3634 0.0031 1.0277 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3410 -0.0122 28 1 4.4777 -1.2832 -0.0087 29 1 0.9328 -2.5761 0.6027 30 1 2.6188 -3.1230 0.4397 31 1 1.8626 -5.6683 -0.3516 32 1 0.6614 -4.5660 0.3627 33 1 0.1431 -5.8243 -0.7846 34 1 0.8214 -3.7921 -3.7297 35 1 2.6725 -5.8805 -2.9789 36 1 1.7984 -5.8821 -4.5698 37 1 -2.5408 -8.3432 -2.1384 38 1 -0.7362 -5.6464 -4.1499 39 1 -1.0411 -5.5361 -2.3635 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044300454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:33 Heat of formation + Delta-G solvation = 84.677634 kcal Electronic energy + Delta-G solvation = -22000.273754 eV Core-core repulsion = 18753.194150 eV Total energy + Delta-G solvation = -3247.079604 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.08897 -41.30783 -39.40227 -35.73591 -34.94672 -34.04091 -32.61260 -30.11428 -28.87016 -27.71564 -27.58050 -26.39408 -24.99412 -22.55469 -22.16353 -20.64248 -19.82510 -18.87665 -18.34393 -18.00995 -17.01314 -16.85321 -16.74703 -15.96428 -15.56632 -15.32217 -15.15601 -14.69831 -14.51563 -14.18215 -14.09436 -13.89914 -13.46391 -13.37472 -13.27842 -13.20821 -13.10877 -12.77962 -12.69425 -12.43888 -11.99161 -11.75309 -11.40817 -11.33776 -10.97189 -10.88724 -10.44171 -9.58291 -9.24157 -8.92898 -7.90720 -5.22894 0.98948 1.41637 1.49442 1.51552 1.59699 1.67294 2.12113 2.21407 2.48462 3.29265 3.37772 3.46953 3.62267 3.69000 3.78210 3.91140 4.06771 4.35457 4.42175 4.45759 4.48904 4.58206 4.69963 4.73715 4.81115 4.86326 4.87948 5.01840 5.02729 5.17088 5.32188 5.34176 5.45741 5.62461 5.86552 5.87924 6.19652 6.44936 6.90992 7.01787 7.16226 7.60272 8.59688 9.27367 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.003994 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.477418 B = 7008.840828 C = 7114.372166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.202 3.798 3 N -0.532 5.532 4 C -0.053 4.053 5 C -0.051 4.051 6 N -0.445 5.445 7 C 0.092 3.908 8 C 0.496 3.504 9 O -0.574 6.574 10 N -0.572 5.572 11 C 0.082 3.918 12 C 0.104 3.896 13 C 0.107 3.893 14 N -0.622 5.622 15 C -0.221 4.221 16 H 0.084 0.916 17 C -0.054 4.054 18 N -0.949 5.949 19 Si 0.971 3.029 20 H -0.296 1.296 21 H -0.264 1.264 22 H -0.294 1.294 23 C 0.156 3.844 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.186 0.814 28 H 0.201 0.799 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.249 0.751 38 H 0.027 0.973 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.940 9.921 8.687 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 N -0.252 5.252 4 C -0.200 4.200 5 C -0.183 4.183 6 N -0.128 5.128 7 C -0.033 4.033 8 C 0.284 3.716 9 O -0.454 6.454 10 N -0.303 5.303 11 C -0.060 4.060 12 C -0.002 4.002 13 C -0.020 4.020 14 N -0.349 5.349 15 C -0.349 4.349 16 H 0.102 0.898 17 C -0.248 4.248 18 N -0.598 5.598 19 Si 0.800 3.200 20 H -0.224 1.224 21 H -0.189 1.189 22 H -0.221 1.221 23 C 0.029 3.971 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.203 0.797 28 H 0.217 0.783 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.585 10.671 8.376 15.079 hybrid contribution 0.000 -2.071 -0.355 2.101 sum 6.585 8.600 8.021 13.478 Atomic orbital electron populations 1.20272 0.83602 1.04099 1.04633 1.23740 0.96759 0.81390 1.04139 1.70191 1.03495 1.29449 1.22111 1.22656 0.94793 0.93827 1.08699 1.23144 0.87517 0.97028 1.10591 1.45058 1.06877 1.06543 1.54275 1.21955 1.06551 0.80779 0.94056 1.21223 0.77003 0.81238 0.92138 1.90741 1.53829 1.53693 1.47127 1.47385 1.63946 1.11588 1.07362 1.21946 1.03149 0.93369 0.87540 1.22386 0.98199 0.95628 0.83958 1.22911 0.93911 0.88204 0.96925 1.46053 1.06167 1.12903 1.69738 1.19210 0.92949 0.89843 1.32922 0.89826 1.25483 0.94877 1.01515 1.02885 1.70005 0.96837 1.40482 1.52450 0.85178 0.77427 0.79599 0.77798 1.22401 1.18889 1.22059 1.22289 0.92580 0.84326 0.97904 0.87810 0.89423 0.90995 0.79700 0.78261 0.83205 0.82694 0.92103 0.88489 0.91234 0.88073 0.93095 0.93379 0.94224 0.95576 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.04 71.24 0.72 -0.66 16 2 C 0.20 5.43 7.88 138.13 1.09 6.51 16 3 N -0.53 -16.21 11.25 -188.13 -2.12 -18.33 16 4 C -0.05 -1.37 11.87 83.52 0.99 -0.38 16 5 C -0.05 -1.15 11.58 83.09 0.96 -0.19 16 6 N -0.44 -10.54 2.24 -518.34 -1.16 -11.70 16 7 C 0.09 1.70 4.71 85.63 0.40 2.11 16 8 C 0.50 13.93 7.74 87.65 0.68 14.61 16 9 O -0.57 -21.10 15.93 -3.06 -0.05 -21.15 16 10 N -0.57 -17.24 3.12 -821.39 -2.56 -19.80 16 11 C 0.08 2.24 9.34 127.77 1.19 3.43 16 12 C 0.10 3.74 4.69 45.55 0.21 3.95 16 13 C 0.11 4.08 8.31 83.18 0.69 4.77 16 14 N -0.62 -28.57 2.47 -738.03 -1.82 -30.40 16 15 C -0.22 -11.12 10.34 84.04 0.87 -10.25 16 16 H 0.08 4.06 7.84 -2.91 -0.02 4.04 16 17 C -0.05 -2.78 5.50 84.86 0.47 -2.31 16 18 N -0.95 -52.74 11.81 21.65 0.26 -52.49 16 19 Si 0.97 41.90 29.56 68.60 2.03 43.93 16 20 H -0.30 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.16 6.79 6.25 83.27 0.52 7.31 16 24 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.46 7.84 -2.39 -0.02 1.44 16 27 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 29 H 0.15 1.93 7.20 -2.39 -0.02 1.91 16 30 H 0.16 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.73 6.44 -2.38 -0.02 1.71 16 33 H 0.07 2.60 5.38 -2.39 -0.01 2.59 16 34 H 0.10 3.65 7.29 -2.39 -0.02 3.63 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 2.22 6.71 -2.39 -0.02 2.20 16 Total: -1.00 -71.15 326.03 4.41 -66.74 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.05 Total: 14.30 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 8.79 Total: 28.89 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -7.41 Total: -132.71 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.05 Total: -21.15 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.15 4.41 -66.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044300454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.414 kcal (2) G-P(sol) polarization free energy of solvation -71.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds