Wall clock time and date at job start Mon Mar 30 2020 23:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.42041 * 2 1 4 4 C 1.33325 * 109.68396 * 179.74645 * 3 2 1 5 5 C 1.36663 * 107.78763 * 0.38191 * 4 3 2 6 6 C 1.46757 * 126.84849 * 179.89830 * 5 4 3 7 7 O 1.21681 * 119.99959 * 359.68379 * 6 5 4 8 8 N 1.34782 * 120.00197 * 179.68447 * 6 5 4 9 9 C 1.46497 * 119.99822 * 179.97438 * 8 6 5 10 10 C 1.52993 * 110.89183 * 297.57543 * 9 8 6 11 11 C 1.55157 * 111.03555 * 173.66724 * 9 8 6 12 12 C 1.54334 * 103.02095 * 277.21854 * 11 9 8 13 13 N 1.47014 * 107.26782 * 338.14225 * 12 11 9 14 14 C 1.36945 * 125.64902 * 178.84833 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.68982 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.68887 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47428 * 108.70537 * 358.58102 * 13 12 11 23 23 N 1.34494 * 125.41811 * 179.97438 * 2 1 3 24 24 H 0.97011 * 126.46757 * 0.03866 * 23 2 1 25 25 H 1.08999 * 109.47010 * 270.02284 * 1 2 3 26 26 H 1.09010 * 109.46820 * 30.01772 * 1 2 3 27 27 H 1.08996 * 109.47678 * 150.01730 * 1 2 3 28 28 H 1.08001 * 126.10477 * 180.28051 * 4 3 2 29 29 H 0.96991 * 119.99925 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.47666 * 182.43089 * 10 9 8 31 31 H 1.09008 * 109.47143 * 302.42655 * 10 9 8 32 32 H 1.08999 * 109.47170 * 62.42125 * 10 9 8 33 33 H 1.08998 * 110.71770 * 35.78022 * 11 9 8 34 34 H 1.09002 * 110.71853 * 158.87455 * 11 9 8 35 35 H 1.08998 * 109.99457 * 218.65928 * 12 11 9 36 36 H 1.09007 * 109.77698 * 97.49747 * 12 11 9 37 37 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.36579 * 143.19056 * 22 13 12 39 39 H 1.08993 * 110.36917 * 265.41008 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 0.0056 5 6 3.5976 -0.6610 0.0006 6 6 4.8028 -1.4984 0.0018 7 8 5.9037 -0.9803 0.0019 8 7 4.6901 -2.8415 0.0027 9 6 5.8932 -3.6775 0.0034 10 6 6.7188 -3.4463 -1.2637 11 6 5.5292 -5.1772 0.1641 12 6 5.3582 -5.3318 1.6901 13 7 6.0973 -4.2314 2.3258 14 6 6.1772 -3.9968 3.6727 15 1 6.7523 -3.1606 4.0419 16 6 5.5190 -4.8338 4.5631 17 7 4.8184 -5.8532 4.1131 18 14 5.6286 -4.5143 6.4004 19 1 4.8431 -5.5423 7.1293 20 1 7.0485 -4.5787 6.8302 21 1 5.0806 -3.1675 6.7021 22 6 6.7435 -3.4259 1.2737 23 7 2.2864 -1.0961 0.0005 24 1 1.9848 -2.0181 0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 4.3979 1.3721 0.0112 29 1 3.8125 -3.2546 0.0029 30 1 7.5839 -4.1094 -1.2598 31 1 6.1053 -3.6548 -2.1403 32 1 7.0554 -2.4100 -1.2941 33 1 4.5990 -5.4061 -0.3558 34 1 6.3382 -5.8113 -0.1986 35 1 5.7657 -6.2889 2.0157 36 1 4.3017 -5.2684 1.9512 37 1 4.3588 -6.4383 4.7354 38 1 6.7245 -2.3690 1.5396 39 1 7.7695 -3.7588 1.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046194547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:49 Heat of formation + Delta-G solvation = 46.050109 kcal Electronic energy + Delta-G solvation = -22194.284317 eV Core-core repulsion = 18945.529698 eV Total energy + Delta-G solvation = -3248.754619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20763 -39.65592 -37.22161 -34.09065 -32.90226 -32.14917 -31.52758 -30.01520 -28.75137 -27.36774 -25.70377 -23.91597 -22.94397 -21.17525 -20.52317 -20.10821 -19.14439 -18.48355 -16.89684 -15.88014 -15.67708 -15.59644 -14.68468 -14.45936 -14.31807 -13.90063 -13.72785 -13.41200 -13.30701 -12.88468 -12.78249 -12.63840 -12.10230 -11.99354 -11.83474 -11.70627 -10.93221 -10.89486 -10.55093 -10.43507 -10.30135 -10.19952 -10.13020 -10.05612 -9.68243 -9.47433 -8.77220 -8.61534 -8.41825 -6.83062 -5.73485 -3.05282 1.36846 2.80486 2.83601 3.34270 3.40197 3.43908 3.45672 3.57673 4.25669 4.49264 4.77207 4.90336 5.10711 5.23906 5.26665 5.33087 5.42579 5.50709 5.56893 5.66338 5.66658 5.79632 5.94313 6.05622 6.10553 6.28997 6.32912 6.46932 6.55409 6.61995 6.79717 7.05046 7.13440 7.49877 7.50784 7.69683 7.77425 7.92089 8.23339 8.42570 9.21287 9.81178 10.46752 11.38638 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.005807 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.559136 B = 4820.355622 C = 5767.418504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.231 3.769 3 N -0.498 5.498 4 C 0.064 3.936 5 C -0.078 4.078 6 C 0.597 3.403 7 O -0.524 6.524 8 N -0.700 5.700 9 C 0.157 3.843 10 C -0.149 4.149 11 C -0.146 4.146 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.221 4.221 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.927 5.927 18 Si 0.911 3.089 19 H -0.290 1.290 20 H -0.284 1.284 21 H -0.286 1.286 22 C 0.130 3.870 23 N -0.550 5.550 24 H 0.421 0.579 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.183 0.817 29 H 0.390 0.610 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.251 0.749 38 H 0.057 0.943 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 5.228 -12.235 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.218 5.218 4 C -0.089 4.089 5 C -0.195 4.195 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.349 5.349 9 C 0.070 3.930 10 C -0.208 4.208 11 C -0.185 4.185 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.575 5.575 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.213 1.213 22 C 0.003 3.997 23 N -0.155 5.155 24 H 0.260 0.740 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.200 0.800 29 H 0.224 0.776 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.020 6.287 -12.023 15.276 hybrid contribution -0.284 -1.508 1.134 1.908 sum -7.304 4.779 -10.888 13.955 Atomic orbital electron populations 1.20282 0.84421 1.04292 1.04086 1.23404 0.95816 0.81664 1.02431 1.70165 1.02208 1.28251 1.21196 1.22603 0.94617 0.91328 1.00394 1.21353 0.83770 0.96133 1.18195 1.16744 0.86806 0.81547 0.76598 1.90800 1.25552 1.73281 1.50390 1.45699 1.09447 1.05231 1.74502 1.21527 0.85126 0.90255 0.96055 1.21995 0.99526 1.03461 0.95774 1.23240 1.00919 0.93284 1.01062 1.21146 0.96882 0.92014 0.84657 1.44435 1.57806 1.29350 1.01315 1.19035 1.25924 1.09718 0.80278 0.90579 1.24755 1.00042 0.97724 0.98019 1.69935 1.36929 1.17936 1.32703 0.86207 0.77556 0.77121 0.84988 1.21623 1.21104 1.21269 1.21910 0.93806 0.96778 0.87166 1.43250 1.06225 1.10216 1.55835 0.74020 0.89599 0.88826 0.90510 0.79993 0.77645 0.91648 0.93147 0.90914 0.91937 0.90698 0.93785 0.93808 0.93842 0.92457 0.95510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.51 36.00 0.38 -0.14 16 2 C 0.23 2.73 8.12 -155.62 -1.26 1.46 16 3 N -0.50 -7.29 11.20 -10.58 -0.12 -7.41 16 4 C 0.06 0.97 11.66 -17.47 -0.20 0.77 16 5 C -0.08 -1.18 7.08 -82.15 -0.58 -1.76 16 6 C 0.60 10.23 7.18 -12.82 -0.09 10.14 16 7 O -0.52 -10.37 13.70 5.21 0.07 -10.30 16 8 N -0.70 -11.18 5.17 -46.89 -0.24 -11.42 16 9 C 0.16 2.71 0.82 -129.67 -0.11 2.61 16 10 C -0.15 -2.22 8.58 37.15 0.32 -1.90 16 11 C -0.15 -2.51 5.99 -24.89 -0.15 -2.66 16 12 C 0.18 4.12 5.37 -3.06 -0.02 4.10 16 13 N -0.60 -15.34 3.39 -170.06 -0.58 -15.92 16 14 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 17 N -0.93 -26.83 10.31 55.49 0.57 -26.25 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 C 0.13 2.84 6.10 -2.52 -0.02 2.82 16 23 N -0.55 -6.47 6.07 -7.02 -0.04 -6.52 16 24 H 0.42 3.74 8.32 -40.82 -0.34 3.40 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.18 2.56 8.06 -52.49 -0.42 2.14 16 29 H 0.39 5.34 7.73 -40.82 -0.32 5.02 16 30 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 1.18 6.53 -51.93 -0.34 0.84 16 33 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 35 H 0.04 1.14 7.52 -51.93 -0.39 0.75 16 36 H 0.04 1.10 7.37 -51.93 -0.38 0.72 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 39 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -34.04 320.66 -7.94 -41.98 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.43 Total: 4.95 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.98 Total: 8.65 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.41 Total: -67.51 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.04 -7.94 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046194547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.028 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds