Wall clock time and date at job start Mon Mar 30 2020 23:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.42041 * 2 1 4 4 C 1.33325 * 109.68396 * 179.74645 * 3 2 1 5 5 C 1.36663 * 107.78763 * 0.38191 * 4 3 2 6 6 C 1.46757 * 126.84849 * 179.89830 * 5 4 3 7 7 O 1.21681 * 119.99959 * 359.68379 * 6 5 4 8 8 N 1.34782 * 120.00197 * 179.68447 * 6 5 4 9 9 C 1.46497 * 119.99822 * 179.97438 * 8 6 5 10 10 C 1.52993 * 110.89183 * 297.57543 * 9 8 6 11 11 C 1.55157 * 111.03555 * 173.66724 * 9 8 6 12 12 C 1.54334 * 103.02095 * 277.21854 * 11 9 8 13 13 N 1.47014 * 107.26782 * 338.14225 * 12 11 9 14 14 C 1.36945 * 125.64902 * 178.84833 * 13 12 11 15 15 H 1.07997 * 119.99756 * 179.68982 * 14 13 12 16 16 C 1.38805 * 119.99878 * 359.68887 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47428 * 108.70537 * 358.58102 * 13 12 11 23 23 N 1.34494 * 125.41811 * 179.97438 * 2 1 3 24 24 H 0.97011 * 126.46757 * 0.03866 * 23 2 1 25 25 H 1.08999 * 109.47010 * 270.02284 * 1 2 3 26 26 H 1.09010 * 109.46820 * 30.01772 * 1 2 3 27 27 H 1.08996 * 109.47678 * 150.01730 * 1 2 3 28 28 H 1.08001 * 126.10477 * 180.28051 * 4 3 2 29 29 H 0.96991 * 119.99925 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.47666 * 182.43089 * 10 9 8 31 31 H 1.09008 * 109.47143 * 302.42655 * 10 9 8 32 32 H 1.08999 * 109.47170 * 62.42125 * 10 9 8 33 33 H 1.08998 * 110.71770 * 35.78022 * 11 9 8 34 34 H 1.09002 * 110.71853 * 158.87455 * 11 9 8 35 35 H 1.08998 * 109.99457 * 218.65928 * 12 11 9 36 36 H 1.09007 * 109.77698 * 97.49747 * 12 11 9 37 37 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.36579 * 143.19056 * 22 13 12 39 39 H 1.08993 * 110.36917 * 265.41008 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7048 0.0056 5 6 3.5976 -0.6610 0.0006 6 6 4.8028 -1.4984 0.0018 7 8 5.9037 -0.9803 0.0019 8 7 4.6901 -2.8415 0.0027 9 6 5.8932 -3.6775 0.0034 10 6 6.7188 -3.4463 -1.2637 11 6 5.5292 -5.1772 0.1641 12 6 5.3582 -5.3318 1.6901 13 7 6.0973 -4.2314 2.3258 14 6 6.1772 -3.9968 3.6727 15 1 6.7523 -3.1606 4.0419 16 6 5.5190 -4.8338 4.5631 17 7 4.8184 -5.8532 4.1131 18 14 5.6286 -4.5143 6.4004 19 1 4.8431 -5.5423 7.1293 20 1 7.0485 -4.5787 6.8302 21 1 5.0806 -3.1675 6.7021 22 6 6.7435 -3.4259 1.2737 23 7 2.2864 -1.0961 0.0005 24 1 1.9848 -2.0181 0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5135 28 1 4.3979 1.3721 0.0112 29 1 3.8125 -3.2546 0.0029 30 1 7.5839 -4.1094 -1.2598 31 1 6.1053 -3.6548 -2.1403 32 1 7.0554 -2.4100 -1.2941 33 1 4.5990 -5.4061 -0.3558 34 1 6.3382 -5.8113 -0.1986 35 1 5.7657 -6.2889 2.0157 36 1 4.3017 -5.2684 1.9512 37 1 4.3588 -6.4383 4.7354 38 1 6.7245 -2.3690 1.5396 39 1 7.7695 -3.7588 1.1174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046194547.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:48 Heat of formation + Delta-G solvation = 21.380849 kcal Electronic energy + Delta-G solvation = -22195.354056 eV Core-core repulsion = 18945.529698 eV Total energy + Delta-G solvation = -3249.824358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.25598 -41.06788 -38.79583 -35.77837 -34.21568 -33.39228 -32.76961 -31.58799 -30.38009 -28.30876 -27.54069 -25.55323 -24.26431 -22.36655 -22.10067 -21.35022 -20.56458 -19.72016 -18.80847 -17.17038 -17.02166 -16.75295 -16.67141 -15.87797 -15.68953 -15.47366 -14.97135 -14.91368 -14.27706 -14.20296 -13.91497 -13.58990 -13.53599 -13.35386 -13.21648 -13.11645 -12.84916 -12.78058 -12.19548 -12.09122 -12.04348 -11.73909 -11.64193 -11.39907 -11.23860 -10.85917 -10.73395 -10.15024 -9.52805 -8.88949 -7.89056 -5.22300 0.24446 1.41357 1.43416 1.49930 1.74708 1.83106 2.11108 2.32047 2.45570 3.29114 3.38833 3.52336 3.67754 3.84119 4.01364 4.09384 4.15451 4.29814 4.58817 4.61599 4.67318 4.73777 4.75287 4.85305 4.85731 4.91103 5.02599 5.05569 5.10834 5.34401 5.39930 5.45619 5.57529 5.64704 5.73829 6.17366 6.25554 6.46765 6.86168 7.09222 7.13128 7.74775 8.38532 9.20499 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.005807 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.559136 B = 4820.355622 C = 5767.418504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.245 3.755 3 N -0.528 5.528 4 C 0.054 3.946 5 C -0.099 4.099 6 C 0.596 3.404 7 O -0.558 6.558 8 N -0.694 5.694 9 C 0.167 3.833 10 C -0.140 4.140 11 C -0.127 4.127 12 C 0.184 3.816 13 N -0.621 5.621 14 C -0.243 4.243 15 H 0.066 0.934 16 C -0.057 4.057 17 N -0.945 5.945 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.284 1.284 22 C 0.126 3.874 23 N -0.540 5.540 24 H 0.435 0.565 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.181 0.819 29 H 0.403 0.597 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.009 0.991 36 H 0.018 0.982 37 H 0.248 0.752 38 H 0.031 0.969 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.103 4.810 -13.435 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.019 4.019 3 N -0.249 5.249 4 C -0.100 4.100 5 C -0.215 4.215 6 C 0.383 3.617 7 O -0.437 6.437 8 N -0.344 5.344 9 C 0.080 3.920 10 C -0.198 4.198 11 C -0.165 4.165 12 C 0.060 3.940 13 N -0.347 5.347 14 C -0.372 4.372 15 H 0.084 0.916 16 C -0.250 4.250 17 N -0.594 5.594 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.210 1.210 22 C 0.000 4.000 23 N -0.146 5.146 24 H 0.277 0.723 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.125 0.875 28 H 0.198 0.802 29 H 0.238 0.762 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.027 0.973 36 H 0.037 0.963 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.638 5.844 -13.249 16.861 hybrid contribution 0.180 -1.327 1.534 2.036 sum -8.458 4.517 -11.715 15.138 Atomic orbital electron populations 1.20549 0.80839 1.06268 1.05361 1.24329 0.97515 0.80838 0.99216 1.70192 1.02073 1.29721 1.22891 1.22753 0.95268 0.91689 1.00277 1.21017 0.84451 0.95801 1.20223 1.16985 0.87010 0.81847 0.75848 1.90777 1.27029 1.73917 1.51968 1.45619 1.09763 1.04919 1.74096 1.21407 0.85191 0.90436 0.94938 1.21925 0.99990 1.02794 0.95113 1.23114 1.03636 0.93244 0.96534 1.20959 0.94682 0.89738 0.88650 1.44675 1.58249 1.30549 1.01213 1.19276 1.26032 1.09630 0.82271 0.91562 1.25476 1.00016 0.97692 1.01835 1.70122 1.37296 1.18363 1.33579 0.85269 0.77595 0.76897 0.80281 1.21291 1.20578 1.21000 1.22022 0.94664 0.94715 0.88641 1.43182 1.04948 1.11153 1.55319 0.72326 0.88468 0.87923 0.87497 0.80159 0.76177 0.90297 0.90378 0.92569 0.88232 0.88764 0.97292 0.96336 0.94246 0.95032 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.51 71.24 0.75 -0.04 16 2 C 0.25 5.29 8.12 138.20 1.12 6.41 16 3 N -0.53 -15.00 11.20 -187.39 -2.10 -17.10 16 4 C 0.05 1.65 11.66 84.10 0.98 2.63 16 5 C -0.10 -2.93 7.08 40.01 0.28 -2.64 16 6 C 0.60 20.33 7.18 86.47 0.62 20.95 16 7 O -0.56 -22.57 13.70 -4.29 -0.06 -22.63 16 8 N -0.69 -21.32 5.17 -420.47 -2.17 -23.49 16 9 C 0.17 5.53 0.82 5.00 0.00 5.54 16 10 C -0.14 -3.82 8.58 71.98 0.62 -3.20 16 11 C -0.13 -4.04 5.99 31.79 0.19 -3.85 16 12 C 0.18 8.56 5.37 86.73 0.47 9.02 16 13 N -0.62 -32.17 3.39 -691.96 -2.35 -34.51 16 14 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 15 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 16 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 17 N -0.94 -55.48 10.31 21.65 0.22 -55.26 16 18 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 19 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.13 5.55 6.10 86.86 0.53 6.08 16 23 N -0.54 -11.73 6.07 -176.12 -1.07 -12.80 16 24 H 0.44 6.64 8.32 -92.70 -0.77 5.87 16 25 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.18 5.31 8.06 -2.91 -0.02 5.28 16 29 H 0.40 10.20 7.73 -92.71 -0.72 9.48 16 30 H 0.08 1.94 8.11 -2.39 -0.02 1.92 16 31 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.06 1.76 6.53 -2.39 -0.02 1.74 16 33 H 0.10 2.48 8.05 -2.39 -0.02 2.47 16 34 H 0.09 2.70 8.01 -2.39 -0.02 2.68 16 35 H 0.01 0.47 7.52 -2.39 -0.02 0.45 16 36 H 0.02 0.94 7.37 -2.38 -0.02 0.92 16 37 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.03 1.55 6.31 -2.39 -0.02 1.53 16 39 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 Total: -1.00 -76.28 320.66 0.99 -75.29 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -0.41 Total: 17.04 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.89 Total: 24.87 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -7.47 Total: -143.17 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.06 Total: -22.63 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.28 0.99 -75.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046194547.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.674 kcal (2) G-P(sol) polarization free energy of solvation -76.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds