Wall clock time and date at job start Mon Mar 30 2020 23:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30848 * 125.42235 * 2 1 4 4 C 1.33323 * 109.68940 * 180.02562 * 3 2 1 5 5 C 1.36662 * 107.78303 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84459 * 179.97438 * 5 4 3 7 7 O 1.21673 * 119.99780 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99602 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99481 * 180.02562 * 8 6 5 10 10 C 1.53005 * 110.77772 * 61.78675 * 9 8 6 11 11 C 1.55156 * 110.71598 * 185.02452 * 9 8 6 12 12 C 1.55130 * 101.48388 * 82.69918 * 11 9 8 13 13 N 1.47422 * 104.72242 * 37.29240 * 12 11 9 14 14 C 1.36935 * 125.64518 * 155.81677 * 13 12 11 15 15 H 1.08005 * 119.99877 * 179.68486 * 14 13 12 16 16 C 1.38811 * 120.00369 * 359.42000 * 14 13 12 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47050 * 59.99408 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46855 * 299.99389 * 18 16 14 22 22 C 1.47016 * 108.70314 * 335.55143 * 13 12 11 23 23 N 1.34498 * 125.41293 * 180.31041 * 2 1 3 24 24 H 0.96999 * 126.47611 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46502 * 89.97500 * 1 2 3 26 26 H 1.08997 * 109.47189 * 209.98064 * 1 2 3 27 27 H 1.08999 * 109.46779 * 329.98322 * 1 2 3 28 28 H 1.08000 * 126.10839 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00144 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.47013 * 298.21083 * 10 9 8 31 31 H 1.08994 * 109.46915 * 58.21520 * 10 9 8 32 32 H 1.08996 * 109.46861 * 178.21363 * 10 9 8 33 33 H 1.09006 * 110.99969 * 200.93585 * 11 9 8 34 34 H 1.08998 * 111.00492 * 324.74569 * 11 9 8 35 35 H 1.09000 * 110.49697 * 278.45056 * 12 11 9 36 36 H 1.09001 * 110.34287 * 156.05818 * 12 11 9 37 37 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.88086 * 120.70618 * 22 13 12 39 39 H 1.09003 * 109.88164 * 241.71479 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 -0.0006 5 6 3.5976 -0.6610 -0.0015 6 6 4.8029 -1.4985 -0.0029 7 8 5.9037 -0.9803 -0.0029 8 7 4.6901 -2.8416 -0.0043 9 6 5.8933 -3.6776 -0.0051 10 6 6.7249 -3.4332 1.2558 11 6 5.5191 -5.1778 -0.1337 12 6 5.3327 -5.3193 -1.6673 13 7 6.3751 -4.4566 -2.2525 14 6 6.9144 -4.5934 -3.5037 15 1 7.6732 -3.9038 -3.8431 16 6 6.4899 -5.6218 -4.3339 17 7 5.5694 -6.4656 -3.9182 18 14 7.2261 -5.8088 -6.0405 19 1 8.6915 -6.0210 -5.9269 20 1 6.6087 -6.9754 -6.7208 21 1 6.9638 -4.5788 -6.8303 22 6 6.7352 -3.4214 -1.2727 23 7 2.2864 -1.0961 -0.0059 24 1 1.9849 -2.0181 -0.0106 25 1 -0.3632 0.0004 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 4.3979 1.3720 -0.0011 29 1 3.8125 -3.2546 -0.0047 30 1 7.0512 -2.3934 1.2799 31 1 6.1193 -3.6445 2.1370 32 1 7.5966 -4.0874 1.2485 33 1 6.3279 -5.8143 0.2254 34 1 4.5901 -5.3954 0.3934 35 1 4.3428 -4.9734 -1.9650 36 1 5.4814 -6.3549 -1.9731 37 1 5.2730 -7.1845 -4.4982 38 1 7.7963 -3.4907 -1.0332 39 1 6.5103 -2.4343 -1.6768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046194548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:52 Heat of formation + Delta-G solvation = 48.042308 kcal Electronic energy + Delta-G solvation = -22015.305889 eV Core-core repulsion = 18766.637659 eV Total energy + Delta-G solvation = -3248.668231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28273 -39.73083 -37.25750 -34.16998 -32.96224 -32.20656 -31.55306 -30.00763 -28.73856 -27.43260 -25.71676 -23.93286 -22.95865 -21.22082 -20.57073 -20.23447 -19.11019 -18.56200 -16.93581 -15.96238 -15.74663 -15.66384 -14.73081 -14.47342 -14.35231 -13.96101 -13.71196 -13.44653 -13.20446 -12.95969 -12.76767 -12.69683 -12.28038 -12.06383 -11.79273 -11.60865 -10.97693 -10.86592 -10.56388 -10.43296 -10.36042 -10.27377 -10.13835 -10.03655 -9.71727 -9.44879 -8.82864 -8.67652 -8.49526 -6.84534 -5.67777 -3.08471 1.29149 2.73063 2.76452 3.27771 3.40358 3.44033 3.45756 3.48857 4.19068 4.47887 4.70521 4.87773 5.08655 5.19147 5.20924 5.33394 5.41687 5.46529 5.51437 5.60607 5.67737 5.72460 5.95231 6.10167 6.15883 6.27189 6.37592 6.44411 6.48664 6.62656 6.79729 7.04526 7.07666 7.37434 7.58815 7.63647 7.78468 7.85370 8.31084 8.36188 9.20485 9.81167 10.45485 11.36342 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.004729 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.644207 B = 5919.173760 C = 6454.511571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.231 3.769 3 N -0.497 5.497 4 C 0.065 3.935 5 C -0.081 4.081 6 C 0.595 3.405 7 O -0.521 6.521 8 N -0.706 5.706 9 C 0.159 3.841 10 C -0.149 4.149 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.136 3.864 23 N -0.551 5.551 24 H 0.421 0.579 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.184 0.816 29 H 0.390 0.610 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.007 0.993 36 H 0.110 0.890 37 H 0.252 0.748 38 H 0.032 0.968 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.681 6.639 11.518 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 N -0.218 5.218 4 C -0.088 4.088 5 C -0.197 4.197 6 C 0.381 3.619 7 O -0.396 6.396 8 N -0.356 5.356 9 C 0.074 3.926 10 C -0.208 4.208 11 C -0.185 4.185 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.347 4.347 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.576 5.576 18 Si 0.745 3.255 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.213 1.213 22 C 0.009 3.991 23 N -0.156 5.156 24 H 0.260 0.740 25 H 0.104 0.896 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.201 0.799 29 H 0.223 0.777 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.128 0.872 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.117 7.669 11.317 16.432 hybrid contribution -0.003 -1.581 -0.995 1.868 sum -9.120 6.089 10.322 15.060 Atomic orbital electron populations 1.20288 0.84365 1.04370 1.04083 1.23426 0.95839 0.81641 1.02323 1.70171 1.02198 1.28240 1.21143 1.22624 0.94643 0.91320 1.00217 1.21366 0.83752 0.96159 1.18401 1.16781 0.86851 0.81577 0.76713 1.90820 1.25534 1.73238 1.50040 1.45895 1.09606 1.05303 1.74809 1.21398 0.84606 0.90702 0.95909 1.22036 0.99555 1.03466 0.95698 1.23407 1.00762 0.92722 1.01632 1.22000 0.90288 0.99805 0.85188 1.44495 1.44464 1.30852 1.13174 1.19071 1.16496 1.10148 0.88936 0.90525 1.24750 0.99160 0.97993 0.98809 1.69742 1.33137 1.18856 1.35836 0.86137 0.78497 0.77127 0.83691 1.21097 1.21577 1.21253 1.21616 0.95869 0.93347 0.88247 1.43257 1.06214 1.10220 1.55954 0.74030 0.89601 0.90470 0.88774 0.79936 0.77677 0.90948 0.93144 0.91518 0.90277 0.92089 0.97465 0.87216 0.93764 0.94968 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.23 2.55 8.12 -155.62 -1.26 1.29 16 3 N -0.50 -6.91 11.20 -10.58 -0.12 -7.03 16 4 C 0.07 0.95 11.66 -17.47 -0.20 0.74 16 5 C -0.08 -1.15 7.08 -82.14 -0.58 -1.73 16 6 C 0.60 9.84 7.02 -12.81 -0.09 9.75 16 7 O -0.52 -10.13 13.86 5.21 0.07 -10.05 16 8 N -0.71 -10.91 5.14 -47.17 -0.24 -11.15 16 9 C 0.16 2.79 0.80 -129.98 -0.10 2.68 16 10 C -0.15 -2.29 8.41 37.16 0.31 -1.98 16 11 C -0.15 -2.56 6.10 -24.46 -0.15 -2.71 16 12 C 0.15 3.53 5.90 -2.41 -0.01 3.52 16 13 N -0.60 -15.55 3.39 -169.94 -0.58 -16.13 16 14 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 15 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.93 -26.61 10.08 55.49 0.56 -26.06 16 18 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.14 3.02 6.12 -3.07 -0.02 3.00 16 23 N -0.55 -5.99 6.07 -7.02 -0.04 -6.03 16 24 H 0.42 3.30 8.32 -40.82 -0.34 2.96 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.18 2.45 8.06 -52.49 -0.42 2.03 16 29 H 0.39 4.99 7.71 -40.82 -0.31 4.67 16 30 H 0.07 1.20 6.46 -51.93 -0.34 0.87 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 34 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.11 2.89 5.84 -51.93 -0.30 2.58 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 39 H 0.04 0.86 6.48 -51.93 -0.34 0.52 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -33.92 319.83 -7.91 -41.83 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.37 Total: 4.87 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.98 Total: 7.69 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -0.42 Total: -66.40 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.92 -7.91 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046194548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.877 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds