Wall clock time and date at job start Mon Mar 30 2020 23:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30848 * 125.42235 * 2 1 4 4 C 1.33323 * 109.68940 * 180.02562 * 3 2 1 5 5 C 1.36662 * 107.78303 * 0.02562 * 4 3 2 6 6 C 1.46767 * 126.84459 * 179.97438 * 5 4 3 7 7 O 1.21673 * 119.99780 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99602 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99481 * 180.02562 * 8 6 5 10 10 C 1.53005 * 110.77772 * 61.78675 * 9 8 6 11 11 C 1.55156 * 110.71598 * 185.02452 * 9 8 6 12 12 C 1.55130 * 101.48388 * 82.69918 * 11 9 8 13 13 N 1.47422 * 104.72242 * 37.29240 * 12 11 9 14 14 C 1.36935 * 125.64518 * 155.81677 * 13 12 11 15 15 H 1.08005 * 119.99877 * 179.68486 * 14 13 12 16 16 C 1.38811 * 120.00369 * 359.42000 * 14 13 12 17 17 N 1.31617 * 119.99773 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00451 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47050 * 59.99408 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.46855 * 299.99389 * 18 16 14 22 22 C 1.47016 * 108.70314 * 335.55143 * 13 12 11 23 23 N 1.34498 * 125.41293 * 180.31041 * 2 1 3 24 24 H 0.96999 * 126.47611 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46502 * 89.97500 * 1 2 3 26 26 H 1.08997 * 109.47189 * 209.98064 * 1 2 3 27 27 H 1.08999 * 109.46779 * 329.98322 * 1 2 3 28 28 H 1.08000 * 126.10839 * 179.97438 * 4 3 2 29 29 H 0.96994 * 120.00144 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.47013 * 298.21083 * 10 9 8 31 31 H 1.08994 * 109.46915 * 58.21520 * 10 9 8 32 32 H 1.08996 * 109.46861 * 178.21363 * 10 9 8 33 33 H 1.09006 * 110.99969 * 200.93585 * 11 9 8 34 34 H 1.08998 * 111.00492 * 324.74569 * 11 9 8 35 35 H 1.09000 * 110.49697 * 278.45056 * 12 11 9 36 36 H 1.09001 * 110.34287 * 156.05818 * 12 11 9 37 37 H 0.97004 * 120.00382 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.88086 * 120.70618 * 22 13 12 39 39 H 1.09003 * 109.88164 * 241.71479 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 -0.0006 5 6 3.5976 -0.6610 -0.0015 6 6 4.8029 -1.4985 -0.0029 7 8 5.9037 -0.9803 -0.0029 8 7 4.6901 -2.8416 -0.0043 9 6 5.8933 -3.6776 -0.0051 10 6 6.7249 -3.4332 1.2558 11 6 5.5191 -5.1778 -0.1337 12 6 5.3327 -5.3193 -1.6673 13 7 6.3751 -4.4566 -2.2525 14 6 6.9144 -4.5934 -3.5037 15 1 7.6732 -3.9038 -3.8431 16 6 6.4899 -5.6218 -4.3339 17 7 5.5694 -6.4656 -3.9182 18 14 7.2261 -5.8088 -6.0405 19 1 8.6915 -6.0210 -5.9269 20 1 6.6087 -6.9754 -6.7208 21 1 6.9638 -4.5788 -6.8303 22 6 6.7352 -3.4214 -1.2727 23 7 2.2864 -1.0961 -0.0059 24 1 1.9849 -2.0181 -0.0106 25 1 -0.3632 0.0004 -1.0277 26 1 -0.3633 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5141 28 1 4.3979 1.3720 -0.0011 29 1 3.8125 -3.2546 -0.0047 30 1 7.0512 -2.3934 1.2799 31 1 6.1193 -3.6445 2.1370 32 1 7.5966 -4.0874 1.2485 33 1 6.3279 -5.8143 0.2254 34 1 4.5901 -5.3954 0.3934 35 1 4.3428 -4.9734 -1.9650 36 1 5.4814 -6.3549 -1.9731 37 1 5.2730 -7.1845 -4.4982 38 1 7.7963 -3.4907 -1.0332 39 1 6.5103 -2.4343 -1.6768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046194548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:51 Heat of formation + Delta-G solvation = 23.495734 kcal Electronic energy + Delta-G solvation = -22016.370309 eV Core-core repulsion = 18766.637659 eV Total energy + Delta-G solvation = -3249.732650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.27240 -41.12401 -38.82601 -35.84315 -34.22234 -33.40190 -32.77730 -31.56980 -30.38927 -28.32045 -27.57034 -25.55309 -24.24523 -22.34878 -22.20126 -21.38599 -20.54590 -19.73654 -18.86905 -17.21396 -17.07015 -16.77368 -16.69917 -15.79852 -15.67964 -15.50346 -14.97979 -14.77311 -14.30790 -14.26677 -14.07514 -13.66772 -13.42117 -13.34312 -13.21653 -13.16510 -12.85541 -12.78037 -12.14720 -12.07938 -12.02712 -11.73193 -11.66719 -11.39618 -11.24801 -10.88069 -10.77219 -10.20138 -9.54214 -8.90935 -7.80970 -5.24662 0.22267 1.44007 1.46457 1.53016 1.73662 1.80755 2.07691 2.28204 2.46726 3.28098 3.38262 3.54921 3.67865 3.82218 3.97616 4.08407 4.13583 4.29044 4.57914 4.60904 4.64346 4.73045 4.75735 4.82611 4.84762 4.88361 5.00290 5.05865 5.11577 5.30948 5.40158 5.44736 5.55210 5.61090 5.77496 6.25000 6.29296 6.44004 6.85508 7.07372 7.11504 7.74859 8.37856 9.19736 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.004729 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.644207 B = 5919.173760 C = 6454.511571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.247 3.753 3 N -0.528 5.528 4 C 0.055 3.945 5 C -0.099 4.099 6 C 0.595 3.405 7 O -0.557 6.557 8 N -0.698 5.698 9 C 0.170 3.830 10 C -0.140 4.140 11 C -0.126 4.126 12 C 0.153 3.847 13 N -0.623 5.623 14 C -0.245 4.245 15 H 0.068 0.932 16 C -0.058 4.058 17 N -0.943 5.943 18 Si 0.977 3.023 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.284 1.284 22 C 0.134 3.866 23 N -0.539 5.539 24 H 0.436 0.564 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.181 0.819 29 H 0.405 0.595 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.103 0.897 35 H -0.008 1.008 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.024 0.976 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 6.096 12.608 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.017 4.017 3 N -0.249 5.249 4 C -0.098 4.098 5 C -0.215 4.215 6 C 0.382 3.618 7 O -0.436 6.436 8 N -0.349 5.349 9 C 0.084 3.916 10 C -0.199 4.199 11 C -0.164 4.164 12 C 0.029 3.971 13 N -0.349 5.349 14 C -0.374 4.374 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.592 5.592 18 Si 0.805 3.195 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.211 1.211 22 C 0.008 3.992 23 N -0.146 5.146 24 H 0.278 0.722 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.198 0.802 29 H 0.241 0.759 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.010 0.990 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -10.907 7.099 12.431 17.997 hybrid contribution 0.477 -1.355 -1.370 1.985 sum -10.430 5.744 11.061 16.252 Atomic orbital electron populations 1.20555 0.80796 1.06270 1.05418 1.24337 0.97512 0.80816 0.99050 1.70199 1.02050 1.29761 1.22871 1.22763 0.95286 0.91695 1.00102 1.20963 0.84384 0.95730 1.20472 1.17028 0.87078 0.81820 0.75850 1.90798 1.27151 1.73908 1.51715 1.45740 1.09782 1.04947 1.74443 1.21216 0.84952 0.90932 0.94498 1.21963 0.99873 1.02670 0.95374 1.23257 1.03198 0.92571 0.97423 1.21840 0.88840 0.97394 0.89045 1.44773 1.44865 1.32169 1.13123 1.19342 1.16958 1.10455 0.90687 0.91362 1.25507 0.99692 0.97693 1.02158 1.69974 1.33739 1.18902 1.36628 0.85185 0.77984 0.76916 0.79434 1.20361 1.21215 1.21058 1.21693 0.96493 0.91213 0.89804 1.43174 1.04844 1.11197 1.55379 0.72213 0.88349 0.87460 0.88015 0.80193 0.75916 0.92495 0.90188 0.90874 0.89504 0.87872 0.98995 0.90343 0.94110 0.95794 0.97365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.51 71.24 0.75 0.08 16 2 C 0.25 4.89 8.12 138.20 1.12 6.01 16 3 N -0.53 -14.18 11.20 -187.39 -2.10 -16.28 16 4 C 0.06 1.61 11.66 84.10 0.98 2.59 16 5 C -0.10 -2.77 7.08 40.01 0.28 -2.49 16 6 C 0.59 19.56 7.02 86.47 0.61 20.16 16 7 O -0.56 -22.21 13.86 -4.26 -0.06 -22.27 16 8 N -0.70 -20.64 5.14 -421.38 -2.17 -22.81 16 9 C 0.17 5.75 0.80 4.79 0.00 5.75 16 10 C -0.14 -4.04 8.41 71.98 0.61 -3.43 16 11 C -0.13 -4.13 6.10 32.06 0.20 -3.94 16 12 C 0.15 7.12 5.90 86.93 0.51 7.64 16 13 N -0.62 -32.75 3.39 -691.57 -2.35 -35.10 16 14 C -0.25 -14.26 10.27 84.03 0.86 -13.39 16 15 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 16 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 17 N -0.94 -54.80 10.08 21.65 0.22 -54.59 16 18 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 C 0.13 6.09 6.12 86.73 0.53 6.62 16 23 N -0.54 -10.62 6.07 -176.11 -1.07 -11.69 16 24 H 0.44 5.60 8.32 -92.71 -0.77 4.83 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.18 5.07 8.06 -2.91 -0.02 5.04 16 29 H 0.41 9.40 7.71 -92.71 -0.72 8.68 16 30 H 0.06 1.85 6.46 -2.39 -0.02 1.83 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 33 H 0.09 2.77 8.04 -2.38 -0.02 2.75 16 34 H 0.10 2.55 8.04 -2.39 -0.02 2.53 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.08 4.18 5.84 -2.39 -0.01 4.16 16 37 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.02 1.11 7.82 -2.39 -0.02 1.09 16 39 H 0.01 0.42 6.48 -2.39 -0.02 0.41 16 Total: -1.00 -76.04 319.83 1.02 -75.02 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.40 Total: 16.77 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 6.92 Total: 22.79 kcal Atomic # 7 Polarization: -133.00 SS G_CDS: -7.46 Total: -140.46 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.04 1.02 -75.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046194548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.517 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds