Wall clock time and date at job start Mon Mar 30 2020 23:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30859 * 125.42118 * 2 1 4 4 C 1.33319 * 109.68602 * 180.02562 * 3 2 1 5 5 C 1.36668 * 107.78877 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84582 * 179.97438 * 5 4 3 7 7 O 1.21681 * 120.00030 * 353.48560 * 6 5 4 8 8 N 1.34776 * 119.99766 * 173.49107 * 6 5 4 9 9 C 1.47019 * 125.64723 * 174.47598 * 8 6 5 10 10 C 1.54330 * 107.27273 * 178.97403 * 9 8 6 11 11 H 1.09001 * 110.71811 * 96.34806 * 10 9 8 12 12 C 1.52996 * 110.71965 * 219.44630 * 10 9 8 13 13 C 1.55157 * 102.94096 * 337.80787 * 10 9 8 14 14 H 1.08997 * 111.00595 * 153.57396 * 13 10 9 15 15 N 1.46502 * 111.00411 * 277.42958 * 13 10 9 16 16 C 1.36935 * 120.00031 * 204.99884 * 15 13 10 17 17 H 1.08002 * 119.99781 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00312 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46968 * 60.00309 * 20 18 16 22 22 H 1.48497 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47242 * 300.00361 * 20 18 16 24 24 C 1.47425 * 125.64866 * 354.51403 * 8 6 5 25 25 N 1.34499 * 125.41655 * 180.31070 * 2 1 3 26 26 H 0.96998 * 126.47459 * 359.97438 * 25 2 1 27 27 H 1.08991 * 109.46860 * 89.97745 * 1 2 3 28 28 H 1.09002 * 109.47289 * 209.97828 * 1 2 3 29 29 H 1.08997 * 109.46976 * 329.97766 * 1 2 3 30 30 H 1.08005 * 126.10791 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.88572 * 59.55791 * 9 8 6 32 32 H 1.09001 * 110.01248 * 298.46261 * 9 8 6 33 33 H 1.09001 * 109.47424 * 58.54239 * 12 10 9 34 34 H 1.09001 * 109.47269 * 298.54428 * 12 10 9 35 35 H 1.09001 * 109.47476 * 178.54638 * 12 10 9 36 36 H 0.97006 * 120.00264 * 24.99758 * 15 13 10 37 37 H 0.96997 * 120.00078 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.37011 * 322.93295 * 24 8 6 39 39 H 1.09001 * 110.36426 * 85.14699 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5976 -0.6610 -0.0004 6 6 4.8029 -1.4984 -0.0013 7 8 5.8998 -0.9858 -0.1220 8 7 4.6946 -2.8352 0.1313 9 6 5.8010 -3.7984 0.0330 10 6 5.2093 -5.2026 0.2774 11 1 4.9889 -5.6982 -0.6681 12 6 6.1611 -6.0515 1.1224 13 6 3.9041 -4.8983 1.0594 14 1 3.1656 -5.6856 0.9083 15 7 4.1792 -4.7058 2.4854 16 6 3.1949 -4.9346 3.4096 17 1 2.2160 -5.2574 3.0871 18 6 3.4556 -4.7527 4.7607 19 7 4.6487 -4.3597 5.1537 20 14 2.1131 -5.0655 6.0214 21 1 1.6672 -6.4790 5.9292 22 1 2.6417 -4.8005 7.3836 23 1 0.9629 -4.1652 5.7535 24 6 3.4471 -3.5740 0.3984 25 7 2.2864 -1.0961 -0.0059 26 1 1.9849 -2.0180 -0.0106 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.3979 1.3721 -0.0011 31 1 6.5540 -3.5767 0.7893 32 1 6.2484 -3.7524 -0.9600 33 1 6.3447 -5.5532 2.0743 34 1 7.1043 -6.1780 0.5908 35 1 5.7128 -7.0283 1.3042 36 1 5.0585 -4.4162 2.7751 37 1 4.8308 -4.2322 6.0978 38 1 2.8105 -3.0097 1.0800 39 1 2.9188 -3.7757 -0.5335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054477683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:36 Heat of formation + Delta-G solvation = 41.385003 kcal Electronic energy + Delta-G solvation = -22221.365021 eV Core-core repulsion = 18972.408108 eV Total energy + Delta-G solvation = -3248.956913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.15872 -39.61202 -37.56102 -34.09396 -33.06613 -32.18237 -31.68074 -30.60291 -28.09900 -27.58760 -26.01895 -24.07734 -22.93204 -21.44964 -20.99986 -19.75436 -19.37379 -17.77457 -17.17985 -16.15406 -16.02304 -15.53115 -15.09065 -14.66987 -14.18600 -13.94261 -13.79687 -13.38549 -13.12192 -13.06735 -12.87873 -12.62835 -12.53731 -12.30570 -12.03054 -11.68870 -11.22365 -11.01296 -10.85602 -10.60703 -10.40357 -10.30233 -10.11255 -10.06048 -9.80280 -9.73628 -9.16110 -8.57068 -8.23653 -7.16884 -5.93246 -3.24776 1.44409 2.88690 2.91206 3.24584 3.32246 3.36812 3.39508 3.56700 4.34671 4.42686 4.64002 4.87663 4.96372 5.09306 5.21350 5.31207 5.32838 5.35974 5.49179 5.55287 5.58211 5.70441 5.76908 5.85471 5.90979 6.00538 6.05421 6.20393 6.24858 6.34922 6.46294 6.59356 6.66246 6.85889 7.25268 7.51192 7.69227 7.98003 8.23584 8.33446 9.35562 9.89308 10.23725 11.28207 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.006626 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.814351 B = 4224.577999 C = 5530.722804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.228 3.772 3 N -0.498 5.498 4 C 0.063 3.937 5 C -0.074 4.074 6 C 0.608 3.392 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.117 3.883 10 C -0.114 4.114 11 H 0.080 0.920 12 C -0.133 4.133 13 C 0.176 3.824 14 H 0.077 0.923 15 N -0.706 5.706 16 C -0.256 4.256 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.925 5.925 20 Si 0.908 3.092 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.053 3.947 25 N -0.549 5.549 26 H 0.424 0.576 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.182 0.818 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.388 0.612 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 1.109 -12.517 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.036 4.036 3 N -0.219 5.219 4 C -0.091 4.091 5 C -0.190 4.190 6 C 0.397 3.603 7 O -0.415 6.415 8 N -0.334 5.334 9 C -0.005 4.005 10 C -0.135 4.135 11 H 0.098 0.902 12 C -0.190 4.190 13 C 0.062 3.938 14 H 0.095 0.905 15 N -0.346 5.346 16 C -0.387 4.387 17 H 0.089 0.911 18 C -0.202 4.202 19 N -0.571 5.571 20 Si 0.738 3.262 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.074 4.074 25 N -0.158 5.158 26 H 0.268 0.732 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.199 0.801 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.339 2.196 -12.430 13.705 hybrid contribution -0.324 -1.264 0.916 1.594 sum -5.662 0.932 -11.514 12.865 Atomic orbital electron populations 1.20280 0.84445 1.04652 1.03724 1.23423 0.95877 0.81875 1.02423 1.70143 1.02087 1.28379 1.21252 1.22574 0.94693 0.91148 1.00684 1.21111 0.83785 0.95760 1.18348 1.16469 0.86862 0.80086 0.76927 1.90813 1.26307 1.72542 1.51810 1.48191 1.10599 1.04812 1.69846 1.21986 0.89621 0.87702 1.01173 1.22549 0.97475 0.94073 0.99356 0.90168 1.21615 0.97254 0.99862 1.00297 1.21294 0.94195 0.92326 0.85966 0.90501 1.42373 1.13832 1.79920 0.98431 1.19151 0.92737 1.39748 0.87067 0.91069 1.24776 0.96764 1.01462 0.97150 1.69645 1.20239 1.51680 1.15514 0.86278 0.80958 0.77961 0.80974 1.21082 1.21574 1.21227 1.23664 0.86979 0.98159 0.98615 1.43838 1.06126 1.10680 1.55117 0.73233 0.89846 0.90322 0.88751 0.80080 0.91062 0.92013 0.90887 0.93606 0.92241 0.77601 0.93137 0.90466 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.51 36.00 0.38 -0.26 16 2 C 0.23 3.09 8.12 -155.61 -1.26 1.82 16 3 N -0.50 -7.97 11.20 -10.58 -0.12 -8.09 16 4 C 0.06 1.04 11.67 -17.47 -0.20 0.84 16 5 C -0.07 -1.25 6.82 -82.14 -0.56 -1.81 16 6 C 0.61 11.38 7.81 -12.82 -0.10 11.28 16 7 O -0.54 -11.40 17.25 5.21 0.09 -11.31 16 8 N -0.60 -10.26 3.33 -172.02 -0.57 -10.83 16 9 C 0.12 1.87 6.46 -3.06 -0.02 1.85 16 10 C -0.11 -1.66 3.42 -88.78 -0.30 -1.96 16 11 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.13 -2.00 8.80 37.16 0.33 -1.68 16 13 C 0.18 2.99 3.47 -65.78 -0.23 2.76 16 14 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 15 N -0.71 -15.86 4.56 -51.35 -0.23 -16.09 16 16 C -0.26 -6.48 9.96 -15.06 -0.15 -6.63 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 18 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 19 N -0.92 -26.81 13.06 55.49 0.72 -26.08 16 20 Si 0.91 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.05 0.81 4.97 -2.53 -0.01 0.80 16 25 N -0.55 -7.70 5.42 -7.01 -0.04 -7.74 16 26 H 0.42 5.11 5.55 -40.82 -0.23 4.88 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.18 2.74 8.06 -52.48 -0.42 2.32 16 31 H 0.07 1.27 7.82 -51.93 -0.41 0.86 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.39 9.68 6.32 -40.82 -0.26 9.42 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.30 6.23 -51.93 -0.32 0.98 16 39 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -32.09 322.61 -7.84 -39.94 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.30 Total: 12.27 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.23 Total: 6.81 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.24 Total: -68.83 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.09 -7.84 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054477683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.321 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds