Wall clock time and date at job start Mon Mar 30 2020 23:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30859 * 125.42118 * 2 1 4 4 C 1.33319 * 109.68602 * 180.02562 * 3 2 1 5 5 C 1.36668 * 107.78877 * 359.97438 * 4 3 2 6 6 C 1.46761 * 126.84582 * 179.97438 * 5 4 3 7 7 O 1.21681 * 120.00030 * 353.48560 * 6 5 4 8 8 N 1.34776 * 119.99766 * 173.49107 * 6 5 4 9 9 C 1.47019 * 125.64723 * 174.47598 * 8 6 5 10 10 C 1.54330 * 107.27273 * 178.97403 * 9 8 6 11 11 H 1.09001 * 110.71811 * 96.34806 * 10 9 8 12 12 C 1.52996 * 110.71965 * 219.44630 * 10 9 8 13 13 C 1.55157 * 102.94096 * 337.80787 * 10 9 8 14 14 H 1.08997 * 111.00595 * 153.57396 * 13 10 9 15 15 N 1.46502 * 111.00411 * 277.42958 * 13 10 9 16 16 C 1.36935 * 120.00031 * 204.99884 * 15 13 10 17 17 H 1.08002 * 119.99781 * 0.02562 * 16 15 13 18 18 C 1.38804 * 120.00312 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46968 * 60.00309 * 20 18 16 22 22 H 1.48497 * 109.47260 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47242 * 300.00361 * 20 18 16 24 24 C 1.47425 * 125.64866 * 354.51403 * 8 6 5 25 25 N 1.34499 * 125.41655 * 180.31070 * 2 1 3 26 26 H 0.96998 * 126.47459 * 359.97438 * 25 2 1 27 27 H 1.08991 * 109.46860 * 89.97745 * 1 2 3 28 28 H 1.09002 * 109.47289 * 209.97828 * 1 2 3 29 29 H 1.08997 * 109.46976 * 329.97766 * 1 2 3 30 30 H 1.08005 * 126.10791 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.88572 * 59.55791 * 9 8 6 32 32 H 1.09001 * 110.01248 * 298.46261 * 9 8 6 33 33 H 1.09001 * 109.47424 * 58.54239 * 12 10 9 34 34 H 1.09001 * 109.47269 * 298.54428 * 12 10 9 35 35 H 1.09001 * 109.47476 * 178.54638 * 12 10 9 36 36 H 0.97006 * 120.00264 * 24.99758 * 15 13 10 37 37 H 0.96997 * 120.00078 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.37011 * 322.93295 * 24 8 6 39 39 H 1.09001 * 110.36426 * 85.14699 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 -0.0006 5 6 3.5976 -0.6610 -0.0004 6 6 4.8029 -1.4984 -0.0013 7 8 5.8998 -0.9858 -0.1220 8 7 4.6946 -2.8352 0.1313 9 6 5.8010 -3.7984 0.0330 10 6 5.2093 -5.2026 0.2774 11 1 4.9889 -5.6982 -0.6681 12 6 6.1611 -6.0515 1.1224 13 6 3.9041 -4.8983 1.0594 14 1 3.1656 -5.6856 0.9083 15 7 4.1792 -4.7058 2.4854 16 6 3.1949 -4.9346 3.4096 17 1 2.2160 -5.2574 3.0871 18 6 3.4556 -4.7527 4.7607 19 7 4.6487 -4.3597 5.1537 20 14 2.1131 -5.0655 6.0214 21 1 1.6672 -6.4790 5.9292 22 1 2.6417 -4.8005 7.3836 23 1 0.9629 -4.1652 5.7535 24 6 3.4471 -3.5740 0.3984 25 7 2.2864 -1.0961 -0.0059 26 1 1.9849 -2.0180 -0.0106 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 4.3979 1.3721 -0.0011 31 1 6.5540 -3.5767 0.7893 32 1 6.2484 -3.7524 -0.9600 33 1 6.3447 -5.5532 2.0743 34 1 7.1043 -6.1780 0.5908 35 1 5.7128 -7.0283 1.3042 36 1 5.0585 -4.4162 2.7751 37 1 4.8308 -4.2322 6.0978 38 1 2.8105 -3.0097 1.0800 39 1 2.9188 -3.7757 -0.5335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054477683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:36 Heat of formation + Delta-G solvation = 19.312835 kcal Electronic energy + Delta-G solvation = -22222.322142 eV Core-core repulsion = 18972.408108 eV Total energy + Delta-G solvation = -3249.914034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.33087 -40.96330 -39.00286 -35.77686 -34.44027 -33.44868 -32.77119 -32.21010 -29.56383 -28.73188 -27.22810 -25.87757 -24.28826 -22.75559 -22.17545 -20.95215 -20.69848 -19.47549 -18.59019 -17.53333 -17.32329 -16.86474 -16.40505 -16.27819 -15.70014 -15.34810 -15.12154 -14.68362 -14.47659 -14.35443 -14.11662 -13.68896 -13.52540 -13.37994 -13.23136 -13.05215 -12.94591 -12.79121 -12.31383 -12.22689 -12.03196 -11.62847 -11.52184 -11.43177 -11.23891 -11.10664 -10.99543 -9.93621 -9.49103 -9.00621 -7.95059 -5.23940 0.19542 1.47167 1.48738 1.55022 1.66830 1.74365 2.02153 2.23316 2.54614 3.28484 3.34928 3.46911 3.72344 3.77936 3.86911 4.05610 4.06450 4.25366 4.33325 4.48173 4.56685 4.57438 4.65354 4.74828 4.77757 4.83623 4.90785 4.94904 5.08757 5.13189 5.18591 5.32494 5.44474 5.51499 5.58946 6.22509 6.25032 6.34355 6.80449 6.94140 7.32613 8.07617 8.29122 9.27988 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.006626 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.814351 B = 4224.577999 C = 5530.722804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.241 3.759 3 N -0.525 5.525 4 C 0.054 3.946 5 C -0.098 4.098 6 C 0.600 3.400 7 O -0.576 6.576 8 N -0.603 5.603 9 C 0.114 3.886 10 C -0.098 4.098 11 H 0.123 0.877 12 C -0.128 4.128 13 C 0.163 3.837 14 H 0.098 0.902 15 N -0.720 5.720 16 C -0.237 4.237 17 H 0.089 0.911 18 C -0.075 4.075 19 N -0.970 5.970 20 Si 0.968 3.032 21 H -0.274 1.274 22 H -0.306 1.306 23 H -0.278 1.278 24 C 0.060 3.940 25 N -0.541 5.541 26 H 0.434 0.566 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.183 0.817 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.372 0.628 37 H 0.248 0.752 38 H 0.062 0.938 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -0.116 -14.594 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.023 4.023 3 N -0.246 5.246 4 C -0.100 4.100 5 C -0.214 4.214 6 C 0.390 3.610 7 O -0.457 6.457 8 N -0.334 5.334 9 C -0.008 4.008 10 C -0.118 4.118 11 H 0.141 0.859 12 C -0.186 4.186 13 C 0.052 3.948 14 H 0.116 0.884 15 N -0.358 5.358 16 C -0.369 4.369 17 H 0.106 0.894 18 C -0.267 4.267 19 N -0.621 5.621 20 Si 0.797 3.203 21 H -0.200 1.200 22 H -0.233 1.233 23 H -0.204 1.204 24 C -0.066 4.066 25 N -0.151 5.151 26 H 0.279 0.721 27 H 0.128 0.872 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.205 0.795 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.112 0.918 -14.570 16.701 hybrid contribution 0.473 -0.886 1.447 1.762 sum -7.639 0.032 -13.123 15.184 Atomic orbital electron populations 1.20561 0.80749 1.05932 1.05818 1.24404 0.97660 0.81001 0.99236 1.70180 1.01915 1.29659 1.22825 1.22760 0.95401 0.91450 1.00382 1.20887 0.84451 0.95645 1.20406 1.16761 0.86987 0.80668 0.76563 1.90776 1.27796 1.73304 1.53822 1.48292 1.11571 1.04588 1.68998 1.22086 0.89129 0.88341 1.01264 1.22544 0.95587 0.93156 1.00479 0.85860 1.21542 0.98817 0.99435 0.98780 1.21661 0.96182 0.93579 0.83379 0.88422 1.42564 1.12605 1.79996 1.00684 1.19651 0.93573 1.36246 0.87435 0.89357 1.25533 0.98528 1.03256 0.99378 1.69826 1.22462 1.54975 1.14804 0.85301 0.78683 0.78285 0.78003 1.19962 1.23341 1.20406 1.23644 0.86295 0.96254 1.00363 1.43755 1.05008 1.11379 1.54948 0.72083 0.87194 0.88279 0.88188 0.80000 0.94083 0.90067 0.94977 0.91280 0.92002 0.79528 0.94373 0.91929 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.51 71.24 0.75 -0.25 16 2 C 0.24 5.99 8.12 138.20 1.12 7.11 16 3 N -0.52 -16.29 11.20 -187.38 -2.10 -18.39 16 4 C 0.05 1.81 11.67 84.10 0.98 2.79 16 5 C -0.10 -3.26 6.82 40.01 0.27 -2.99 16 6 C 0.60 22.56 7.81 86.47 0.68 23.24 16 7 O -0.58 -25.23 17.25 -4.29 -0.07 -25.30 16 8 N -0.60 -19.85 3.33 -816.38 -2.72 -22.56 16 9 C 0.11 3.50 6.46 86.73 0.56 4.06 16 10 C -0.10 -2.57 3.42 -9.60 -0.03 -2.60 16 11 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 12 C -0.13 -3.71 8.80 71.98 0.63 -3.07 16 13 C 0.16 5.10 3.47 46.38 0.16 5.26 16 14 H 0.10 2.71 8.09 -2.39 -0.02 2.70 16 15 N -0.72 -32.01 4.56 -316.37 -1.44 -33.45 16 16 C -0.24 -11.78 9.96 84.03 0.84 -10.94 16 17 H 0.09 4.00 7.83 -2.91 -0.02 3.97 16 18 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 19 N -0.97 -58.23 13.06 21.65 0.28 -57.95 16 20 Si 0.97 43.94 29.55 68.60 2.03 45.97 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.31 -14.60 7.11 99.48 0.71 -13.90 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 C 0.06 1.66 4.97 86.86 0.43 2.10 16 25 N -0.54 -14.06 5.42 -176.11 -0.95 -15.01 16 26 H 0.43 9.10 5.55 -92.71 -0.51 8.58 16 27 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.18 5.75 8.06 -2.91 -0.02 5.73 16 31 H 0.04 1.50 7.82 -2.39 -0.02 1.48 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 1.19 6.34 -2.39 -0.02 1.18 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.37 19.04 6.32 -92.70 -0.59 18.45 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.06 1.96 6.23 -2.39 -0.01 1.94 16 39 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 Total: -1.00 -72.77 322.61 1.86 -70.91 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.02 Total: 34.68 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 6.86 Total: 21.11 kcal Atomic # 7 Polarization: -140.44 SS G_CDS: -6.93 Total: -147.37 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.07 Total: -25.30 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -72.77 1.86 -70.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054477683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.220 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds