Wall clock time and date at job start Mon Mar 30 2020 23:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.41980 * 2 1 4 4 C 1.33320 * 109.68484 * 180.25256 * 3 2 1 5 5 C 1.36663 * 107.78608 * 359.75379 * 4 3 2 6 6 C 1.46762 * 126.84367 * 180.02562 * 5 4 3 7 7 O 1.21691 * 120.00001 * 352.30678 * 6 5 4 8 8 N 1.34777 * 120.00138 * 172.31496 * 6 5 4 9 9 C 1.47025 * 125.64834 * 182.04918 * 8 6 5 10 10 C 1.54336 * 107.26389 * 178.84624 * 9 8 6 11 11 H 1.08997 * 110.51128 * 96.45050 * 10 9 8 12 12 C 1.52996 * 110.99970 * 219.60146 * 10 9 8 13 13 C 1.55154 * 103.02202 * 338.14130 * 10 9 8 14 14 H 1.09003 * 111.04043 * 277.21824 * 13 10 9 15 15 N 1.46497 * 111.00647 * 153.37836 * 13 10 9 16 16 C 1.36935 * 120.00330 * 161.35123 * 15 13 10 17 17 H 1.08002 * 119.99605 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00251 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99969 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46879 * 119.99859 * 20 18 16 23 23 H 1.48500 * 109.47063 * 240.00140 * 20 18 16 24 24 C 1.47424 * 125.64528 * 2.35305 * 8 6 5 25 25 N 1.34499 * 125.41779 * 179.82538 * 2 1 3 26 26 H 0.96998 * 126.47044 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46505 * 270.18226 * 1 2 3 28 28 H 1.08997 * 109.47271 * 30.18152 * 1 2 3 29 29 H 1.08997 * 109.47176 * 150.18602 * 1 2 3 30 30 H 1.08001 * 126.10158 * 179.72931 * 4 3 2 31 31 H 1.09000 * 109.88374 * 298.39130 * 9 8 6 32 32 H 1.09004 * 109.88125 * 59.56068 * 9 8 6 33 33 H 1.09003 * 109.46774 * 173.78209 * 12 10 9 34 34 H 1.09000 * 109.47554 * 293.78208 * 12 10 9 35 35 H 1.09002 * 109.47545 * 53.78615 * 12 10 9 36 36 H 0.96999 * 119.99797 * 341.35648 * 15 13 10 37 37 H 0.97005 * 119.99980 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.36797 * 322.93498 * 24 8 6 39 39 H 1.08998 * 110.36352 * 85.25743 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 -0.0055 5 6 3.5975 -0.6609 -0.0036 6 6 4.8028 -1.4983 -0.0075 7 8 5.8978 -0.9881 -0.1541 8 7 4.6969 -2.8325 0.1511 9 6 5.8194 -3.7803 0.2095 10 6 5.2211 -5.1860 0.4286 11 1 5.1197 -5.7103 -0.5216 12 6 6.0738 -5.9987 1.4049 13 6 3.8275 -4.8815 1.0389 14 1 3.9003 -4.7053 2.1122 15 7 2.8804 -5.9612 0.7500 16 6 1.7376 -6.0870 1.4939 17 1 1.5343 -5.3899 2.2934 18 6 0.8405 -7.1103 1.2205 19 7 1.0885 -7.9601 0.2465 20 14 -0.7181 -7.2822 2.2358 21 1 -0.7609 -6.2099 3.2622 22 1 -1.9026 -7.1646 1.3479 23 1 -0.7298 -8.6084 2.9039 24 6 3.4360 -3.5840 0.2885 25 7 2.2865 -1.0961 0.0033 26 1 1.9849 -2.0180 0.0058 27 1 -0.3632 0.0033 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5109 30 1 4.3978 1.3722 -0.0110 31 1 6.3759 -3.7540 -0.7274 32 1 6.4768 -3.5255 1.0409 33 1 5.5731 -6.9412 1.6269 34 1 7.0465 -6.2008 0.9566 35 1 6.2091 -5.4333 2.3269 36 1 3.0629 -6.5871 0.0318 37 1 0.4615 -8.6750 0.0551 38 1 2.7147 -3.0114 0.8716 39 1 3.0275 -3.8223 -0.6935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054477686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:41 Heat of formation + Delta-G solvation = 39.671748 kcal Electronic energy + Delta-G solvation = -21897.154208 eV Core-core repulsion = 18648.123003 eV Total energy + Delta-G solvation = -3249.031205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.26119 -39.69271 -37.62762 -34.31124 -33.25524 -32.26945 -31.75449 -30.86800 -27.99782 -27.59415 -26.16802 -24.28562 -22.72583 -21.35988 -21.09066 -20.01952 -19.85110 -17.53472 -17.33901 -16.27535 -16.16544 -15.61071 -15.28297 -14.60449 -14.15181 -14.07728 -13.79623 -13.43195 -13.19712 -13.15748 -12.95917 -12.90679 -12.62189 -12.51844 -12.02218 -11.84505 -11.26939 -11.17398 -10.92718 -10.74913 -10.44038 -10.38706 -10.19054 -10.08022 -9.97410 -9.85496 -9.20391 -8.71551 -8.35577 -7.27653 -6.01948 -3.34201 1.33280 2.79051 2.80384 3.12798 3.26827 3.33634 3.35800 3.40361 4.27770 4.36030 4.55326 4.79938 4.88541 5.02995 5.06680 5.24876 5.34792 5.36558 5.44799 5.47624 5.52270 5.65157 5.71786 5.74770 5.83506 5.87379 5.98463 6.03855 6.15529 6.26712 6.33084 6.48043 6.55656 6.67260 7.17943 7.46516 7.52752 7.88979 8.14081 8.17289 9.27518 9.79468 10.14757 11.19531 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006063 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.519481 B = 4616.802002 C = 6432.356880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.232 3.768 3 N -0.500 5.500 4 C 0.065 3.935 5 C -0.083 4.083 6 C 0.606 3.394 7 O -0.538 6.538 8 N -0.612 5.612 9 C 0.118 3.882 10 C -0.113 4.113 11 H 0.086 0.914 12 C -0.134 4.134 13 C 0.180 3.820 14 H 0.068 0.932 15 N -0.709 5.709 16 C -0.256 4.256 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.925 5.925 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.059 3.941 25 N -0.551 5.551 26 H 0.429 0.571 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.182 0.818 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.388 0.612 37 H 0.258 0.742 38 H 0.064 0.936 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 9.644 -0.391 10.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.032 4.032 3 N -0.220 5.220 4 C -0.090 4.090 5 C -0.199 4.199 6 C 0.395 3.605 7 O -0.416 6.416 8 N -0.345 5.345 9 C -0.004 4.004 10 C -0.132 4.132 11 H 0.104 0.896 12 C -0.192 4.192 13 C 0.067 3.933 14 H 0.086 0.914 15 N -0.349 5.349 16 C -0.387 4.387 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.572 5.572 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.068 4.068 25 N -0.162 5.162 26 H 0.275 0.725 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.199 0.801 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.223 0.777 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.294 10.722 -0.349 11.222 hybrid contribution -0.781 -1.645 0.219 1.834 sum 2.513 9.077 -0.130 9.419 Atomic orbital electron populations 1.20319 0.84293 1.04561 1.04191 1.23494 0.95999 0.81847 1.01811 1.70166 1.02027 1.28409 1.21407 1.22589 0.94761 0.91045 1.00566 1.21093 0.83846 0.95755 1.19206 1.16539 0.86932 0.80076 0.76947 1.90818 1.26548 1.72730 1.51468 1.48401 1.09609 1.05249 1.71286 1.22018 0.88803 0.87823 1.01785 1.22484 0.96385 0.93861 1.00515 0.89594 1.21664 0.98728 1.00638 0.98176 1.21329 0.88136 0.86995 0.96815 0.91388 1.42317 1.21500 1.30802 1.40271 1.19254 0.96873 1.10935 1.11594 0.90956 1.24778 0.99132 0.97651 0.98548 1.69663 1.37432 1.18323 1.31792 0.86140 0.83052 0.77719 0.79353 1.20424 1.21654 1.21581 1.23780 0.85434 0.95980 1.01591 1.44169 1.06073 1.11143 1.54765 0.72462 0.89526 0.88781 0.90160 0.80067 0.91513 0.91227 0.91230 0.92963 0.92785 0.77708 0.93196 0.91784 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.51 36.01 0.38 -0.30 16 2 C 0.23 3.04 8.12 -155.61 -1.26 1.78 16 3 N -0.50 -7.46 11.20 -10.58 -0.12 -7.58 16 4 C 0.06 0.97 11.67 -17.47 -0.20 0.77 16 5 C -0.08 -1.28 6.85 -82.15 -0.56 -1.84 16 6 C 0.61 10.15 7.82 -12.82 -0.10 10.05 16 7 O -0.54 -10.18 17.24 5.20 0.09 -10.09 16 8 N -0.61 -9.52 3.33 -172.01 -0.57 -10.09 16 9 C 0.12 1.69 6.48 -3.06 -0.02 1.67 16 10 C -0.11 -1.64 3.15 -88.78 -0.28 -1.92 16 11 H 0.09 1.28 8.00 -51.93 -0.42 0.86 16 12 C -0.13 -1.77 9.17 37.16 0.34 -1.43 16 13 C 0.18 3.10 3.13 -65.78 -0.21 2.90 16 14 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 15 N -0.71 -15.35 5.28 -51.35 -0.27 -15.62 16 16 C -0.26 -6.27 9.98 -15.06 -0.15 -6.42 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 19 N -0.93 -25.54 13.06 55.49 0.72 -24.82 16 20 Si 0.91 20.47 29.55 -169.99 -5.02 15.45 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.06 0.92 5.22 -2.53 -0.01 0.91 16 25 N -0.55 -7.52 5.45 -7.02 -0.04 -7.56 16 26 H 0.43 5.52 5.39 -40.82 -0.22 5.30 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.18 2.41 8.06 -52.49 -0.42 1.99 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.39 9.06 7.71 -40.82 -0.31 8.74 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 0.97 5.49 -51.93 -0.29 0.69 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -29.76 325.69 -7.88 -37.64 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.40 Total: 11.80 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.18 Total: 5.97 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.28 Total: -65.67 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.76 -7.88 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054477686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.310 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds