Wall clock time and date at job start Mon Mar 30 2020 23:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.41980 * 2 1 4 4 C 1.33320 * 109.68484 * 180.25256 * 3 2 1 5 5 C 1.36663 * 107.78608 * 359.75379 * 4 3 2 6 6 C 1.46762 * 126.84367 * 180.02562 * 5 4 3 7 7 O 1.21691 * 120.00001 * 352.30678 * 6 5 4 8 8 N 1.34777 * 120.00138 * 172.31496 * 6 5 4 9 9 C 1.47025 * 125.64834 * 182.04918 * 8 6 5 10 10 C 1.54336 * 107.26389 * 178.84624 * 9 8 6 11 11 H 1.08997 * 110.51128 * 96.45050 * 10 9 8 12 12 C 1.52996 * 110.99970 * 219.60146 * 10 9 8 13 13 C 1.55154 * 103.02202 * 338.14130 * 10 9 8 14 14 H 1.09003 * 111.04043 * 277.21824 * 13 10 9 15 15 N 1.46497 * 111.00647 * 153.37836 * 13 10 9 16 16 C 1.36935 * 120.00330 * 161.35123 * 15 13 10 17 17 H 1.08002 * 119.99605 * 0.02562 * 16 15 13 18 18 C 1.38811 * 120.00251 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99841 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99969 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46921 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46879 * 119.99859 * 20 18 16 23 23 H 1.48500 * 109.47063 * 240.00140 * 20 18 16 24 24 C 1.47424 * 125.64528 * 2.35305 * 8 6 5 25 25 N 1.34499 * 125.41779 * 179.82538 * 2 1 3 26 26 H 0.96998 * 126.47044 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.46505 * 270.18226 * 1 2 3 28 28 H 1.08997 * 109.47271 * 30.18152 * 1 2 3 29 29 H 1.08997 * 109.47176 * 150.18602 * 1 2 3 30 30 H 1.08001 * 126.10158 * 179.72931 * 4 3 2 31 31 H 1.09000 * 109.88374 * 298.39130 * 9 8 6 32 32 H 1.09004 * 109.88125 * 59.56068 * 9 8 6 33 33 H 1.09003 * 109.46774 * 173.78209 * 12 10 9 34 34 H 1.09000 * 109.47554 * 293.78208 * 12 10 9 35 35 H 1.09002 * 109.47545 * 53.78615 * 12 10 9 36 36 H 0.96999 * 119.99797 * 341.35648 * 15 13 10 37 37 H 0.97005 * 119.99980 * 180.02562 * 19 18 16 38 38 H 1.09000 * 110.36797 * 322.93498 * 24 8 6 39 39 H 1.08998 * 110.36352 * 85.25743 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 -0.0055 5 6 3.5975 -0.6609 -0.0036 6 6 4.8028 -1.4983 -0.0075 7 8 5.8978 -0.9881 -0.1541 8 7 4.6969 -2.8325 0.1511 9 6 5.8194 -3.7803 0.2095 10 6 5.2211 -5.1860 0.4286 11 1 5.1197 -5.7103 -0.5216 12 6 6.0738 -5.9987 1.4049 13 6 3.8275 -4.8815 1.0389 14 1 3.9003 -4.7053 2.1122 15 7 2.8804 -5.9612 0.7500 16 6 1.7376 -6.0870 1.4939 17 1 1.5343 -5.3899 2.2934 18 6 0.8405 -7.1103 1.2205 19 7 1.0885 -7.9601 0.2465 20 14 -0.7181 -7.2822 2.2358 21 1 -0.7609 -6.2099 3.2622 22 1 -1.9026 -7.1646 1.3479 23 1 -0.7298 -8.6084 2.9039 24 6 3.4360 -3.5840 0.2885 25 7 2.2865 -1.0961 0.0033 26 1 1.9849 -2.0180 0.0058 27 1 -0.3632 0.0033 1.0277 28 1 -0.3634 0.8883 -0.5166 29 1 -0.3633 -0.8916 -0.5109 30 1 4.3978 1.3722 -0.0110 31 1 6.3759 -3.7540 -0.7274 32 1 6.4768 -3.5255 1.0409 33 1 5.5731 -6.9412 1.6269 34 1 7.0465 -6.2008 0.9566 35 1 6.2091 -5.4333 2.3269 36 1 3.0629 -6.5871 0.0318 37 1 0.4615 -8.6750 0.0551 38 1 2.7147 -3.0114 0.8716 39 1 3.0275 -3.8223 -0.6935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054477686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:41 Heat of formation + Delta-G solvation = 20.543347 kcal Electronic energy + Delta-G solvation = -21897.983678 eV Core-core repulsion = 18648.123003 eV Total energy + Delta-G solvation = -3249.860675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.36937 -40.98101 -38.98900 -35.96428 -34.52492 -33.48133 -32.83580 -32.41327 -29.37742 -28.75644 -27.27678 -25.99553 -24.01847 -22.67503 -22.22368 -21.33650 -20.97749 -19.14040 -18.74868 -17.54242 -17.45768 -16.81844 -16.62163 -16.10221 -15.50121 -15.42457 -15.15367 -14.68064 -14.58393 -14.35700 -14.26560 -14.05172 -13.50737 -13.31675 -13.22786 -13.13410 -12.95072 -12.89591 -12.28235 -12.14123 -12.03522 -11.77614 -11.63935 -11.47629 -11.27235 -11.13033 -10.99622 -9.98748 -9.51121 -9.09471 -7.97097 -5.27632 0.16952 1.48779 1.51451 1.59244 1.63435 1.67251 1.97027 2.17871 2.54496 3.20007 3.33068 3.42294 3.60564 3.71165 3.82865 4.01721 4.11328 4.17867 4.25029 4.38705 4.42383 4.54919 4.63268 4.70899 4.72531 4.79936 4.84523 5.02212 5.02576 5.06432 5.11369 5.29375 5.42436 5.44509 5.52949 6.14113 6.22788 6.24995 6.77778 6.88998 7.32152 8.01137 8.26368 9.25447 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.006063 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.519481 B = 4616.802002 C = 6432.356880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.241 3.759 3 N -0.522 5.522 4 C 0.063 3.937 5 C -0.104 4.104 6 C 0.606 3.394 7 O -0.565 6.565 8 N -0.611 5.611 9 C 0.119 3.881 10 C -0.102 4.102 11 H 0.083 0.917 12 C -0.130 4.130 13 C 0.175 3.825 14 H 0.065 0.935 15 N -0.717 5.717 16 C -0.244 4.244 17 H 0.080 0.920 18 C -0.063 4.063 19 N -0.963 5.963 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.299 1.299 24 C 0.072 3.928 25 N -0.550 5.550 26 H 0.432 0.568 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.191 0.809 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.071 0.929 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 10.610 0.179 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.023 4.023 3 N -0.242 5.242 4 C -0.091 4.091 5 C -0.220 4.220 6 C 0.396 3.604 7 O -0.444 6.444 8 N -0.343 5.343 9 C -0.003 4.003 10 C -0.122 4.122 11 H 0.101 0.899 12 C -0.187 4.187 13 C 0.064 3.936 14 H 0.083 0.917 15 N -0.356 5.356 16 C -0.375 4.375 17 H 0.098 0.902 18 C -0.256 4.256 19 N -0.613 5.613 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.226 1.226 24 C -0.054 4.054 25 N -0.160 5.160 26 H 0.279 0.721 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.208 0.792 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.211 0.789 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.913 11.721 0.245 12.080 hybrid contribution -0.622 -1.860 0.050 1.962 sum 2.291 9.861 0.295 10.128 Atomic orbital electron populations 1.20553 0.81342 1.05940 1.05565 1.24312 0.97507 0.81127 0.99322 1.70213 1.02101 1.29255 1.22659 1.22855 0.95347 0.91196 0.99729 1.20965 0.84184 0.95810 1.21072 1.16673 0.87007 0.80235 0.76460 1.90796 1.27594 1.73149 1.52904 1.48391 1.09813 1.05189 1.70893 1.22092 0.88571 0.87041 1.02601 1.22404 0.94928 0.94350 1.00494 0.89893 1.21625 0.99332 0.99428 0.98316 1.21451 0.88816 0.86439 0.96917 0.91750 1.42382 1.21660 1.31822 1.39735 1.19597 0.97105 1.09925 1.10915 0.90247 1.25450 1.02036 0.98130 0.99963 1.69797 1.38397 1.19260 1.33832 0.85213 0.79858 0.77327 0.78159 1.18897 1.22103 1.22642 1.23489 0.85631 0.95120 1.01189 1.44137 1.05553 1.11466 1.54889 0.72144 0.88001 0.87522 0.88667 0.79175 0.90727 0.90363 0.93112 0.90648 0.92048 0.78870 0.93947 0.91078 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.51 71.24 0.75 -0.40 16 2 C 0.24 5.84 8.12 138.20 1.12 6.96 16 3 N -0.52 -14.81 11.20 -187.39 -2.10 -16.91 16 4 C 0.06 1.84 11.67 84.10 0.98 2.82 16 5 C -0.10 -3.12 6.85 40.01 0.27 -2.84 16 6 C 0.61 19.75 7.82 86.47 0.68 20.43 16 7 O -0.56 -20.99 17.24 -4.32 -0.07 -21.06 16 8 N -0.61 -18.20 3.33 -816.34 -2.71 -20.91 16 9 C 0.12 3.19 6.48 86.73 0.56 3.76 16 10 C -0.10 -2.83 3.15 -9.60 -0.03 -2.86 16 11 H 0.08 2.38 8.00 -2.39 -0.02 2.37 16 12 C -0.13 -3.20 9.17 71.98 0.66 -2.54 16 13 C 0.17 5.83 3.13 46.39 0.15 5.98 16 14 H 0.06 2.22 8.04 -2.39 -0.02 2.20 16 15 N -0.72 -30.69 5.28 -316.37 -1.67 -32.36 16 16 C -0.24 -11.74 9.98 84.03 0.84 -10.90 16 17 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 19 N -0.96 -53.72 13.06 21.65 0.28 -53.44 16 20 Si 0.96 41.80 29.55 68.60 2.03 43.83 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 24 C 0.07 2.17 5.22 86.86 0.45 2.62 16 25 N -0.55 -14.15 5.45 -176.12 -0.96 -15.11 16 26 H 0.43 10.39 5.39 -92.71 -0.50 9.90 16 27 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 2.00 7.78 -2.38 -0.02 1.98 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 36 H 0.38 17.73 7.71 -92.71 -0.71 17.01 16 37 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 38 H 0.07 2.05 5.49 -2.39 -0.01 2.03 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.69 325.69 1.56 -61.14 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.14 Total: 34.57 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 6.90 Total: 20.26 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -7.16 Total: -138.73 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.07 Total: -21.06 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -62.69 1.56 -61.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054477686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.680 kcal (2) G-P(sol) polarization free energy of solvation -62.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds