Wall clock time and date at job start Tue Mar 31 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21573 * 119.99854 * 359.97438 * 9 8 6 11 11 C 1.47710 * 120.00044 * 180.02562 * 9 8 6 12 12 C 1.41504 * 126.51394 * 179.71506 * 11 9 8 13 13 C 1.35363 * 105.49931 * 179.84238 * 12 11 9 14 14 N 1.35031 * 107.23210 * 0.41443 * 13 12 11 15 15 H 0.96999 * 124.88730 * 179.73532 * 14 13 12 16 16 N 1.28475 * 110.22746 * 359.71891 * 14 13 12 17 17 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 18 18 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 19 19 C 1.36935 * 120.63190 * 6.63012 * 18 2 1 20 20 H 1.07999 * 120.00320 * 329.22515 * 19 18 2 21 21 C 1.38822 * 120.00123 * 149.22234 * 19 18 2 22 22 N 1.31620 * 119.99894 * 345.91144 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 165.91084 * 21 19 18 24 24 H 1.48506 * 109.46773 * 90.00394 * 23 21 19 25 25 H 1.48501 * 109.46790 * 210.00013 * 23 21 19 26 26 H 1.48498 * 109.47308 * 330.00413 * 23 21 19 27 27 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 28 28 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 29 29 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 30 30 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 31 31 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 32 32 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 33 33 H 1.09003 * 109.46176 * 58.65780 * 5 4 2 34 34 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 35 35 H 1.08003 * 127.25215 * 359.97438 * 12 11 9 36 36 H 1.08006 * 126.38257 * 180.13453 * 13 12 11 37 37 H 1.09000 * 109.58135 * 185.57547 * 17 6 5 38 38 H 1.09006 * 109.58248 * 65.15897 * 17 6 5 39 39 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9083 -3.8679 -1.2972 11 6 3.2754 -5.3699 -0.5669 12 6 3.7354 -6.5492 -1.1994 13 6 2.8585 -7.5166 -0.8426 14 7 1.9273 -6.9408 -0.0522 15 1 1.1732 -7.4041 0.3447 16 7 2.1841 -5.6911 0.0988 17 6 3.4651 -0.9453 -1.3247 18 7 2.0226 -0.6981 -1.1952 19 6 1.1539 -1.1101 -2.1702 20 1 0.1442 -1.3918 -1.9101 21 6 1.5709 -1.1656 -3.4932 22 7 2.6876 -0.5712 -3.8567 23 14 0.5473 -2.0841 -4.7573 24 1 -0.4376 -1.1545 -5.3666 25 1 1.4371 -2.6258 -5.8156 26 1 -0.1714 -3.2020 -4.0947 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3634 0.5182 0.8874 29 1 -0.3633 0.5093 -0.8926 30 1 1.7659 -0.1694 2.1367 31 1 1.6029 -1.7269 1.2893 32 1 3.9378 -1.3473 2.0654 33 1 4.0061 0.1460 1.0997 34 1 2.5337 -3.1236 0.5323 35 1 4.6045 -6.6555 -1.8317 36 1 2.8942 -8.5546 -1.1389 37 1 3.6520 -1.5691 -2.1988 38 1 3.9904 0.0038 -1.4315 39 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071366808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:22 Heat of formation + Delta-G solvation = 60.522009 kcal Electronic energy + Delta-G solvation = -22746.026498 eV Core-core repulsion = 19497.899428 eV Total energy + Delta-G solvation = -3248.127070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43685 -39.16443 -37.34531 -34.00401 -32.64705 -31.83313 -30.83745 -30.08725 -29.74470 -26.20705 -24.95951 -23.67408 -22.08329 -21.59379 -20.44449 -19.84418 -18.64849 -18.38645 -16.80909 -16.15802 -15.50877 -15.31316 -14.74768 -14.05290 -13.95075 -13.69329 -13.56549 -13.46678 -13.16737 -12.90101 -12.66901 -12.38897 -11.81140 -11.14360 -11.08797 -10.88968 -10.83809 -10.74761 -10.63815 -10.31673 -10.25561 -9.88605 -9.56654 -9.40076 -9.33430 -9.24492 -9.08304 -8.36811 -8.22765 -6.48444 -5.66539 -3.11490 1.87378 2.32207 2.97793 3.42726 3.50148 3.51372 3.80293 4.03692 4.57541 4.75855 4.91303 5.40151 5.43795 5.45068 5.56122 5.60439 5.68804 5.79059 5.90727 6.10279 6.20501 6.23324 6.41035 6.43014 6.49431 6.53729 6.62207 6.70001 6.78515 6.99542 7.05717 7.13101 7.22034 7.48647 7.78072 7.91402 7.93469 8.30550 8.59010 8.90040 9.32675 9.96778 10.53760 11.41491 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.008020 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.934798 B = 3490.547399 C = 4415.603384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.077 0.923 8 N -0.685 5.685 9 C 0.599 3.401 10 O -0.540 6.540 11 C 0.001 3.999 12 C -0.182 4.182 13 C -0.023 4.023 14 N -0.389 5.389 15 H 0.443 0.557 16 N -0.260 5.260 17 C 0.163 3.837 18 N -0.581 5.581 19 C -0.247 4.247 20 H 0.065 0.935 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.895 3.105 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.282 1.282 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.095 0.905 38 H 0.026 0.974 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -10.209 10.665 14.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.095 0.905 8 N -0.335 5.335 9 C 0.382 3.618 10 O -0.416 6.416 11 C -0.160 4.160 12 C -0.210 4.210 13 C -0.167 4.167 14 N -0.102 5.102 15 H 0.287 0.713 16 N -0.096 5.096 17 C 0.036 3.964 18 N -0.305 5.305 19 C -0.377 4.377 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.726 3.274 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.208 1.208 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.113 0.887 38 H 0.044 0.956 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.933 -9.559 10.682 14.365 hybrid contribution -0.740 -1.252 -0.930 1.726 sum -1.673 -10.811 9.752 14.656 Atomic orbital electron populations 1.21790 0.96212 1.01173 1.00092 1.20461 0.92849 0.93598 0.87211 0.95776 1.22075 0.95195 1.00783 0.99013 1.21684 0.97034 1.00093 0.96782 1.21829 0.97000 0.81715 0.98345 0.90531 1.45703 1.29363 1.08181 1.50250 1.16793 0.83505 0.81900 0.79587 1.90765 1.25162 1.84136 1.41559 1.22220 0.95250 0.96470 1.02107 1.21822 1.03044 0.90922 1.05182 1.22869 0.93083 1.00597 1.00184 1.43331 1.23091 1.06168 1.37652 0.71329 1.73568 1.16895 0.96888 1.22230 1.21175 0.83818 0.96987 0.94418 1.43998 1.02670 1.64857 1.18946 1.19032 0.95302 1.37544 0.85805 0.91717 1.25076 0.97679 0.99430 0.97052 1.69974 1.23523 1.44197 1.16616 0.86410 0.79509 0.79803 0.81707 1.21541 1.21631 1.20774 0.93002 0.94507 0.92073 0.92927 0.92552 0.93035 0.91074 0.76339 0.82136 0.80124 0.88672 0.95585 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.96 37.16 0.30 -2.24 16 2 C 0.17 3.37 3.50 -67.60 -0.24 3.14 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.20 5.21 -26.61 -0.14 -2.34 16 5 C -0.12 -1.95 5.59 -26.69 -0.15 -2.10 16 6 C 0.12 2.34 2.81 -67.81 -0.19 2.15 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 8 N -0.68 -13.48 4.91 -54.68 -0.27 -13.75 16 9 C 0.60 12.53 7.79 -12.39 -0.10 12.43 16 10 O -0.54 -12.85 16.59 5.30 0.09 -12.76 16 11 C 0.00 0.02 7.13 -82.77 -0.59 -0.57 16 12 C -0.18 -2.71 10.81 -39.36 -0.43 -3.13 16 13 C -0.02 -0.25 12.02 -17.17 -0.21 -0.46 16 14 N -0.39 -4.35 6.83 30.47 0.21 -4.14 16 15 H 0.44 3.03 8.96 -190.44 -1.71 1.32 16 16 N -0.26 -4.08 11.92 33.42 0.40 -3.68 16 17 C 0.16 4.00 4.87 -3.71 -0.02 3.98 16 18 N -0.58 -14.25 2.90 -164.77 -0.48 -14.73 16 19 C -0.25 -6.72 8.54 -15.06 -0.13 -6.85 16 20 H 0.07 1.74 6.27 -52.49 -0.33 1.41 16 21 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 22 N -0.90 -26.94 11.21 55.49 0.62 -26.31 16 23 Si 0.90 22.66 29.58 -169.99 -5.03 17.63 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.25 7.63 -51.93 -0.40 0.86 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.96 6.41 -51.93 -0.33 0.63 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 7.45 6.50 -40.82 -0.27 7.19 16 35 H 0.16 2.26 8.06 -52.48 -0.42 1.83 16 36 H 0.18 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.10 2.75 6.17 -51.93 -0.32 2.43 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -34.05 316.69 -8.30 -42.35 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.65 Total: 6.52 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -1.97 Total: 4.11 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.48 Total: -62.62 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.05 -8.30 -42.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071366808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.871 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds