Wall clock time and date at job start Tue Mar 31 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21573 * 119.99854 * 359.97438 * 9 8 6 11 11 C 1.47710 * 120.00044 * 180.02562 * 9 8 6 12 12 C 1.41504 * 126.51394 * 179.71506 * 11 9 8 13 13 C 1.35363 * 105.49931 * 179.84238 * 12 11 9 14 14 N 1.35031 * 107.23210 * 0.41443 * 13 12 11 15 15 H 0.96999 * 124.88730 * 179.73532 * 14 13 12 16 16 N 1.28475 * 110.22746 * 359.71891 * 14 13 12 17 17 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 18 18 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 19 19 C 1.36935 * 120.63190 * 6.63012 * 18 2 1 20 20 H 1.07999 * 120.00320 * 329.22515 * 19 18 2 21 21 C 1.38822 * 120.00123 * 149.22234 * 19 18 2 22 22 N 1.31620 * 119.99894 * 345.91144 * 21 19 18 23 23 Si 1.86801 * 119.99668 * 165.91084 * 21 19 18 24 24 H 1.48506 * 109.46773 * 90.00394 * 23 21 19 25 25 H 1.48501 * 109.46790 * 210.00013 * 23 21 19 26 26 H 1.48498 * 109.47308 * 330.00413 * 23 21 19 27 27 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 28 28 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 29 29 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 30 30 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 31 31 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 32 32 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 33 33 H 1.09003 * 109.46176 * 58.65780 * 5 4 2 34 34 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 35 35 H 1.08003 * 127.25215 * 359.97438 * 12 11 9 36 36 H 1.08006 * 126.38257 * 180.13453 * 13 12 11 37 37 H 1.09000 * 109.58135 * 185.57547 * 17 6 5 38 38 H 1.09006 * 109.58248 * 65.15897 * 17 6 5 39 39 H 0.96997 * 119.99522 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9083 -3.8679 -1.2972 11 6 3.2754 -5.3699 -0.5669 12 6 3.7354 -6.5492 -1.1994 13 6 2.8585 -7.5166 -0.8426 14 7 1.9273 -6.9408 -0.0522 15 1 1.1732 -7.4041 0.3447 16 7 2.1841 -5.6911 0.0988 17 6 3.4651 -0.9453 -1.3247 18 7 2.0226 -0.6981 -1.1952 19 6 1.1539 -1.1101 -2.1702 20 1 0.1442 -1.3918 -1.9101 21 6 1.5709 -1.1656 -3.4932 22 7 2.6876 -0.5712 -3.8567 23 14 0.5473 -2.0841 -4.7573 24 1 -0.4376 -1.1545 -5.3666 25 1 1.4371 -2.6258 -5.8156 26 1 -0.1714 -3.2020 -4.0947 27 1 -0.3633 -1.0276 0.0051 28 1 -0.3634 0.5182 0.8874 29 1 -0.3633 0.5093 -0.8926 30 1 1.7659 -0.1694 2.1367 31 1 1.6029 -1.7269 1.2893 32 1 3.9378 -1.3473 2.0654 33 1 4.0061 0.1460 1.0997 34 1 2.5337 -3.1236 0.5323 35 1 4.6045 -6.6555 -1.8317 36 1 2.8942 -8.5546 -1.1389 37 1 3.6520 -1.5691 -2.1988 38 1 3.9904 0.0038 -1.4315 39 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071366808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:21 Heat of formation + Delta-G solvation = 35.057909 kcal Electronic energy + Delta-G solvation = -22747.130705 eV Core-core repulsion = 19497.899428 eV Total energy + Delta-G solvation = -3249.231276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.51955 -40.79382 -39.02989 -35.76505 -34.49681 -33.11058 -32.07740 -31.73970 -31.30153 -27.89970 -26.83738 -25.08129 -23.85558 -22.63915 -22.07380 -21.29227 -20.34500 -19.41335 -18.30655 -18.01775 -17.12334 -16.73546 -16.42074 -15.85516 -15.56813 -15.38871 -15.06784 -14.69895 -14.59493 -14.39791 -14.14113 -13.92546 -13.59357 -12.96385 -12.87829 -12.61815 -12.53310 -12.42536 -12.13433 -12.08998 -11.93768 -11.57130 -11.25572 -11.10375 -11.03043 -10.51660 -10.42633 -10.12564 -9.88825 -8.52989 -7.80575 -5.26995 0.61012 1.27244 1.38284 1.41509 1.48539 2.01606 2.40096 2.49909 2.57198 3.34997 3.51720 3.65493 4.01158 4.11518 4.11989 4.19900 4.31185 4.50869 4.65599 4.74351 4.79466 4.81352 4.83719 4.97582 5.05276 5.10727 5.11923 5.27307 5.33265 5.37183 5.57402 5.62876 5.69853 5.75236 5.75912 6.22323 6.46752 6.62753 6.95976 7.20624 7.33692 7.94632 8.46038 9.24449 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013199 B = 0.008020 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.934798 B = 3490.547399 C = 4415.603384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.017 0.983 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.124 3.876 7 H 0.068 0.932 8 N -0.678 5.678 9 C 0.589 3.411 10 O -0.584 6.584 11 C -0.039 4.039 12 C -0.216 4.216 13 C 0.017 3.983 14 N -0.366 5.366 15 H 0.465 0.535 16 N -0.273 5.273 17 C 0.173 3.827 18 N -0.594 5.594 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.055 4.055 22 N -0.935 5.935 23 Si 0.951 3.049 24 H -0.281 1.281 25 H -0.302 1.302 26 H -0.273 1.273 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.408 0.592 35 H 0.157 0.843 36 H 0.238 0.762 37 H 0.045 0.955 38 H 0.001 0.999 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -12.213 13.227 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.035 0.965 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.018 3.982 7 H 0.087 0.913 8 N -0.328 5.328 9 C 0.375 3.625 10 O -0.463 6.463 11 C -0.199 4.199 12 C -0.244 4.244 13 C -0.128 4.128 14 N -0.083 5.083 15 H 0.313 0.687 16 N -0.111 5.111 17 C 0.046 3.954 18 N -0.317 5.317 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.250 4.250 22 N -0.582 5.582 23 Si 0.780 3.220 24 H -0.208 1.208 25 H -0.229 1.229 26 H -0.198 1.198 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.175 0.825 36 H 0.254 0.746 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.980 -11.564 13.311 17.882 hybrid contribution -0.173 -0.681 -1.664 1.807 sum -3.153 -12.245 11.646 17.191 Atomic orbital electron populations 1.21711 0.94782 1.01128 1.00832 1.20781 0.94156 0.93298 0.86946 0.96491 1.21959 0.94811 1.00819 0.98263 1.21664 0.97260 1.00006 0.95814 1.21597 0.96480 0.82164 0.97955 0.91345 1.45639 1.29442 1.07733 1.49994 1.17365 0.83120 0.83381 0.78662 1.90721 1.27139 1.85151 1.43315 1.21926 0.97091 0.95816 1.05045 1.22054 1.04640 0.91220 1.06530 1.23538 0.90343 1.01843 0.97055 1.43472 1.23380 1.04964 1.36456 0.68683 1.73457 1.16201 0.99062 1.22401 1.20840 0.84300 0.95318 0.94974 1.44200 1.02174 1.65557 1.19809 1.19343 0.95598 1.35527 0.86241 0.91144 1.25780 0.98963 1.01139 0.99090 1.70149 1.25443 1.46466 1.16142 0.85511 0.78067 0.78947 0.79434 1.20756 1.22938 1.19849 0.93376 0.90513 0.94578 0.88998 0.92431 0.89767 0.90384 0.75526 0.82491 0.74586 0.93675 0.98074 0.94803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 7.96 71.98 0.57 -3.93 16 2 C 0.15 6.04 3.50 44.98 0.16 6.20 16 3 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.12 -3.63 5.21 30.68 0.16 -3.47 16 5 C -0.11 -3.39 5.59 30.62 0.17 -3.21 16 6 C 0.12 5.05 2.81 45.07 0.13 5.18 16 7 H 0.07 2.88 7.58 -2.39 -0.02 2.87 16 8 N -0.68 -26.96 4.91 -445.17 -2.19 -29.15 16 9 C 0.59 25.53 7.79 86.75 0.68 26.21 16 10 O -0.58 -29.50 16.59 -3.95 -0.07 -29.56 16 11 C -0.04 -1.40 7.13 42.46 0.30 -1.10 16 12 C -0.22 -6.24 10.81 22.41 0.24 -6.00 16 13 C 0.02 0.30 12.02 83.54 1.00 1.31 16 14 N -0.37 -6.88 6.83 -57.51 -0.39 -7.28 16 15 H 0.46 4.29 8.96 -219.99 -1.97 2.32 16 16 N -0.27 -8.09 11.92 -48.18 -0.57 -8.67 16 17 C 0.17 8.89 4.87 86.36 0.42 9.32 16 18 N -0.59 -29.57 2.90 -675.23 -1.96 -31.53 16 19 C -0.24 -13.08 8.54 84.04 0.72 -12.36 16 20 H 0.07 3.77 6.27 -2.91 -0.02 3.75 16 21 C -0.05 -3.23 4.97 84.86 0.42 -2.81 16 22 N -0.94 -59.04 11.21 21.65 0.24 -58.80 16 23 Si 0.95 47.85 29.58 68.60 2.03 49.88 16 24 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 26 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 27 H 0.05 1.72 7.44 -2.39 -0.02 1.70 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.43 7.63 -2.39 -0.02 1.41 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.77 6.41 -2.39 -0.02 1.75 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.41 14.83 6.50 -92.71 -0.60 14.22 16 35 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.24 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.04 2.78 6.17 -2.39 -0.01 2.77 16 38 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 39 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.30 316.69 0.58 -79.73 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -1.49 Total: 20.04 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 4.97 Total: 15.33 kcal Atomic # 7 Polarization: -130.55 SS G_CDS: -4.87 Total: -135.42 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.07 Total: -29.56 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -80.30 0.58 -79.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071366808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.784 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds