Wall clock time and date at job start Tue Mar 31 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.70641 * 2 1 4 4 C 1.53198 * 109.58702 * 239.64296 * 2 1 3 5 5 C 1.53038 * 109.31676 * 185.57720 * 4 2 1 6 6 C 1.53043 * 109.53505 * 61.36673 * 5 4 2 7 7 H 1.08998 * 109.52317 * 178.66867 * 6 5 4 8 8 N 1.46497 * 109.49851 * 58.58785 * 6 5 4 9 9 C 1.34772 * 120.00039 * 155.15992 * 8 6 5 10 10 O 1.21574 * 120.00008 * 0.02562 * 9 8 6 11 11 C 1.47715 * 120.00168 * 179.97438 * 9 8 6 12 12 C 1.41503 * 126.51926 * 180.02562 * 11 9 8 13 13 C 1.35363 * 105.50197 * 180.02562 * 12 11 9 14 14 N 1.35035 * 107.22879 * 0.02562 * 13 12 11 15 15 H 0.97001 * 124.88440 * 180.02562 * 14 13 12 16 16 N 1.28468 * 110.23194 * 359.97438 * 14 13 12 17 17 C 1.53192 * 109.31041 * 298.63252 * 6 5 4 18 18 N 1.46923 * 109.58742 * 120.35650 * 2 1 3 19 19 C 1.36938 * 120.63397 * 353.41334 * 18 2 1 20 20 H 1.07999 * 119.99246 * 29.00215 * 19 18 2 21 21 C 1.38812 * 120.00191 * 209.00189 * 19 18 2 22 22 N 1.31619 * 119.99986 * 15.02660 * 21 19 18 23 23 Si 1.86803 * 119.99936 * 195.02902 * 21 19 18 24 24 H 1.48501 * 109.47098 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47295 * 120.00106 * 23 21 19 26 26 H 1.48500 * 109.46870 * 240.00447 * 23 21 19 27 27 H 1.09007 * 109.46521 * 299.64493 * 1 2 3 28 28 H 1.08999 * 109.46994 * 59.64056 * 1 2 3 29 29 H 1.09002 * 109.47262 * 179.65033 * 1 2 3 30 30 H 1.08997 * 109.49584 * 305.53329 * 4 2 1 31 31 H 1.09000 * 109.49213 * 65.59004 * 4 2 1 32 32 H 1.08997 * 109.45740 * 301.34698 * 5 4 2 33 33 H 1.08997 * 109.46018 * 181.38385 * 5 4 2 34 34 H 0.96998 * 119.99950 * 335.15488 * 8 6 5 35 35 H 1.08004 * 127.24710 * 0.05161 * 12 11 9 36 36 H 1.08001 * 126.38434 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.58679 * 174.42326 * 17 6 5 38 38 H 1.08992 * 109.58970 * 294.84621 * 17 6 5 39 39 H 0.97001 * 119.99398 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1702 6 6 3.9569 -1.6658 0.0634 7 1 5.0411 -1.7702 0.1038 8 7 3.3405 -2.9925 -0.0149 9 6 3.8952 -4.0329 0.6381 10 8 4.9068 -3.8703 1.2924 11 6 3.2733 -5.3704 0.5597 12 6 3.7355 -6.5519 1.1864 13 6 2.8553 -7.5174 0.8322 14 7 1.9258 -6.9404 0.0406 15 1 1.1719 -7.4029 -0.3577 16 7 2.1831 -5.6906 -0.1083 17 6 3.4651 -0.9470 1.3236 18 7 2.0225 -0.6995 1.1944 19 6 1.1537 -1.1135 2.1686 20 1 0.1360 -1.3680 1.9117 21 6 1.5810 -1.2059 3.4861 22 7 2.7040 -0.6276 3.8558 23 14 0.5621 -2.1512 4.7342 24 1 -0.6461 -2.7035 4.0706 25 1 1.3714 -3.2637 5.2932 26 1 0.1512 -1.2382 5.8310 27 1 -0.3632 0.5084 0.8932 28 1 -0.3633 0.5194 -0.8867 29 1 -0.3634 -1.0277 -0.0063 30 1 1.6029 -1.7253 -1.2913 31 1 1.7654 -0.1672 -2.1368 32 1 4.0061 0.1472 -1.0994 33 1 3.9377 -1.3449 -2.0670 34 1 2.5331 -3.1221 -0.5366 35 1 4.6067 -6.6604 1.8154 36 1 2.8899 -8.5556 1.1276 37 1 3.6518 -1.5718 2.1971 38 1 3.9904 0.0019 1.4316 39 1 3.0023 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071366809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:27 Heat of formation + Delta-G solvation = 61.147928 kcal Electronic energy + Delta-G solvation = -22758.828655 eV Core-core repulsion = 19510.728727 eV Total energy + Delta-G solvation = -3248.099928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43595 -39.16480 -37.34847 -34.00616 -32.65748 -31.83288 -30.83876 -30.08866 -29.73404 -26.21089 -24.96964 -23.67304 -22.08271 -21.59253 -20.44656 -19.84354 -18.64770 -18.38556 -16.80846 -16.16265 -15.50751 -15.31961 -14.74832 -14.05178 -13.94536 -13.69296 -13.56287 -13.46642 -13.17139 -12.89929 -12.67027 -12.39116 -11.81475 -11.15139 -11.09671 -10.88786 -10.83586 -10.74645 -10.65069 -10.30147 -10.24248 -9.88048 -9.56424 -9.39533 -9.33225 -9.24270 -9.08211 -8.36935 -8.22650 -6.51137 -5.66306 -3.09733 1.87460 2.32429 2.97843 3.43267 3.50277 3.52026 3.80619 4.03909 4.57601 4.75957 4.91469 5.39675 5.43965 5.44851 5.56019 5.60138 5.69035 5.79227 5.90933 6.09896 6.20245 6.22990 6.40718 6.42304 6.49386 6.53422 6.62125 6.69705 6.78434 6.99352 7.05676 7.12219 7.21583 7.48945 7.79379 7.91457 7.93859 8.30838 8.58080 8.90400 9.32434 9.97064 10.52875 11.41607 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.008072 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.755711 B = 3467.838297 C = 4392.156115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.077 0.923 8 N -0.685 5.685 9 C 0.599 3.401 10 O -0.540 6.540 11 C 0.001 3.999 12 C -0.182 4.182 13 C -0.023 4.023 14 N -0.389 5.389 15 H 0.443 0.557 16 N -0.260 5.260 17 C 0.161 3.839 18 N -0.582 5.582 19 C -0.245 4.245 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.899 5.899 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.401 0.599 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 -10.095 -10.735 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.095 0.905 8 N -0.335 5.335 9 C 0.382 3.618 10 O -0.416 6.416 11 C -0.160 4.160 12 C -0.210 4.210 13 C -0.167 4.167 14 N -0.102 5.102 15 H 0.287 0.713 16 N -0.096 5.096 17 C 0.034 3.966 18 N -0.305 5.305 19 C -0.375 4.375 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.544 5.544 23 Si 0.725 3.275 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.237 0.763 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.002 -9.448 -10.759 14.354 hybrid contribution -0.722 -1.273 0.919 1.728 sum -1.724 -10.721 -9.840 14.654 Atomic orbital electron populations 1.21794 0.96197 1.01193 1.00108 1.20457 0.92841 0.93607 0.87212 0.95766 1.22076 0.95205 1.00793 0.99012 1.21683 0.97022 1.00088 0.96806 1.21828 0.96999 0.81719 0.98332 0.90529 1.45699 1.29374 1.08153 1.50275 1.16791 0.83511 0.81900 0.79590 1.90766 1.25170 1.84165 1.41493 1.22224 0.95236 0.96446 1.02133 1.21822 1.02942 0.90925 1.05274 1.22868 0.93043 1.00609 1.00213 1.43331 1.23184 1.06168 1.37564 0.71331 1.73568 1.16953 0.96893 1.22183 1.21212 0.83714 0.97088 0.94564 1.44034 1.02723 1.64759 1.19012 1.19113 0.94587 1.37656 0.86163 0.91513 1.25028 0.97690 0.99738 0.96930 1.69989 1.23155 1.44545 1.16676 0.86342 0.79615 0.79765 0.81779 1.20515 1.21675 1.21838 0.92084 0.94481 0.92970 0.92550 0.92925 0.91080 0.93034 0.76343 0.82142 0.80123 0.88365 0.95631 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 2 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.20 5.21 -26.61 -0.14 -2.34 16 5 C -0.12 -1.95 5.59 -26.69 -0.15 -2.10 16 6 C 0.12 2.34 2.81 -67.81 -0.19 2.15 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.68 -13.50 4.91 -54.68 -0.27 -13.77 16 9 C 0.60 12.56 7.79 -12.39 -0.10 12.47 16 10 O -0.54 -12.89 16.59 5.30 0.09 -12.80 16 11 C 0.00 0.03 7.13 -82.76 -0.59 -0.56 16 12 C -0.18 -2.72 10.81 -39.36 -0.43 -3.14 16 13 C -0.02 -0.25 12.02 -17.17 -0.21 -0.46 16 14 N -0.39 -4.35 6.83 30.47 0.21 -4.14 16 15 H 0.44 3.02 8.96 -190.44 -1.71 1.31 16 16 N -0.26 -4.08 11.92 33.42 0.40 -3.68 16 17 C 0.16 3.95 4.89 -3.71 -0.02 3.94 16 18 N -0.58 -14.25 2.91 -164.77 -0.48 -14.73 16 19 C -0.25 -6.67 8.60 -15.06 -0.13 -6.80 16 20 H 0.07 1.79 6.21 -52.49 -0.33 1.46 16 21 C 0.00 0.14 4.96 -17.43 -0.09 0.05 16 22 N -0.90 -26.95 11.14 55.49 0.62 -26.33 16 23 Si 0.89 22.67 29.58 -169.99 -5.03 17.64 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H 0.06 1.24 7.62 -51.92 -0.40 0.85 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 30 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.40 7.45 6.50 -40.82 -0.27 7.19 16 35 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.10 2.85 6.06 -51.93 -0.31 2.53 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -34.08 316.49 -8.30 -42.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.64 Total: 6.58 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.97 Total: 4.08 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.48 Total: -62.65 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.08 -8.30 -42.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071366809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.528 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds