Wall clock time and date at job start Tue Mar 31 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.70641 * 2 1 4 4 C 1.53198 * 109.58702 * 239.64296 * 2 1 3 5 5 C 1.53038 * 109.31676 * 185.57720 * 4 2 1 6 6 C 1.53043 * 109.53505 * 61.36673 * 5 4 2 7 7 H 1.08998 * 109.52317 * 178.66867 * 6 5 4 8 8 N 1.46497 * 109.49851 * 58.58785 * 6 5 4 9 9 C 1.34772 * 120.00039 * 155.15992 * 8 6 5 10 10 O 1.21574 * 120.00008 * 0.02562 * 9 8 6 11 11 C 1.47715 * 120.00168 * 179.97438 * 9 8 6 12 12 C 1.41503 * 126.51926 * 180.02562 * 11 9 8 13 13 C 1.35363 * 105.50197 * 180.02562 * 12 11 9 14 14 N 1.35035 * 107.22879 * 0.02562 * 13 12 11 15 15 H 0.97001 * 124.88440 * 180.02562 * 14 13 12 16 16 N 1.28468 * 110.23194 * 359.97438 * 14 13 12 17 17 C 1.53192 * 109.31041 * 298.63252 * 6 5 4 18 18 N 1.46923 * 109.58742 * 120.35650 * 2 1 3 19 19 C 1.36938 * 120.63397 * 353.41334 * 18 2 1 20 20 H 1.07999 * 119.99246 * 29.00215 * 19 18 2 21 21 C 1.38812 * 120.00191 * 209.00189 * 19 18 2 22 22 N 1.31619 * 119.99986 * 15.02660 * 21 19 18 23 23 Si 1.86803 * 119.99936 * 195.02902 * 21 19 18 24 24 H 1.48501 * 109.47098 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47295 * 120.00106 * 23 21 19 26 26 H 1.48500 * 109.46870 * 240.00447 * 23 21 19 27 27 H 1.09007 * 109.46521 * 299.64493 * 1 2 3 28 28 H 1.08999 * 109.46994 * 59.64056 * 1 2 3 29 29 H 1.09002 * 109.47262 * 179.65033 * 1 2 3 30 30 H 1.08997 * 109.49584 * 305.53329 * 4 2 1 31 31 H 1.09000 * 109.49213 * 65.59004 * 4 2 1 32 32 H 1.08997 * 109.45740 * 301.34698 * 5 4 2 33 33 H 1.08997 * 109.46018 * 181.38385 * 5 4 2 34 34 H 0.96998 * 119.99950 * 335.15488 * 8 6 5 35 35 H 1.08004 * 127.24710 * 0.05161 * 12 11 9 36 36 H 1.08001 * 126.38434 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.58679 * 174.42326 * 17 6 5 38 38 H 1.08992 * 109.58970 * 294.84621 * 17 6 5 39 39 H 0.97001 * 119.99398 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8481 -1.1702 6 6 3.9569 -1.6658 0.0634 7 1 5.0411 -1.7702 0.1038 8 7 3.3405 -2.9925 -0.0149 9 6 3.8952 -4.0329 0.6381 10 8 4.9068 -3.8703 1.2924 11 6 3.2733 -5.3704 0.5597 12 6 3.7355 -6.5519 1.1864 13 6 2.8553 -7.5174 0.8322 14 7 1.9258 -6.9404 0.0406 15 1 1.1719 -7.4029 -0.3577 16 7 2.1831 -5.6906 -0.1083 17 6 3.4651 -0.9470 1.3236 18 7 2.0225 -0.6995 1.1944 19 6 1.1537 -1.1135 2.1686 20 1 0.1360 -1.3680 1.9117 21 6 1.5810 -1.2059 3.4861 22 7 2.7040 -0.6276 3.8558 23 14 0.5621 -2.1512 4.7342 24 1 -0.6461 -2.7035 4.0706 25 1 1.3714 -3.2637 5.2932 26 1 0.1512 -1.2382 5.8310 27 1 -0.3632 0.5084 0.8932 28 1 -0.3633 0.5194 -0.8867 29 1 -0.3634 -1.0277 -0.0063 30 1 1.6029 -1.7253 -1.2913 31 1 1.7654 -0.1672 -2.1368 32 1 4.0061 0.1472 -1.0994 33 1 3.9377 -1.3449 -2.0670 34 1 2.5331 -3.1221 -0.5366 35 1 4.6067 -6.6604 1.8154 36 1 2.8899 -8.5556 1.1276 37 1 3.6518 -1.5718 2.1971 38 1 3.9904 0.0019 1.4316 39 1 3.0023 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071366809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:26 Heat of formation + Delta-G solvation = 35.641924 kcal Electronic energy + Delta-G solvation = -22759.934679 eV Core-core repulsion = 19510.728727 eV Total energy + Delta-G solvation = -3249.205952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.52119 -40.79636 -39.03425 -35.76834 -34.50579 -33.11277 -32.08111 -31.72917 -31.30185 -27.90210 -26.84618 -25.08175 -23.85450 -22.64084 -22.07463 -21.29372 -20.34456 -19.41466 -18.30972 -18.02117 -17.12975 -16.73626 -16.42106 -15.84878 -15.56851 -15.39090 -15.07083 -14.69919 -14.59702 -14.40150 -14.14336 -13.92453 -13.59696 -12.99962 -12.87065 -12.63159 -12.53513 -12.40602 -12.11147 -12.06143 -11.93980 -11.57184 -11.25635 -11.10617 -11.02697 -10.52285 -10.42659 -10.12798 -9.89061 -8.55493 -7.80401 -5.25089 0.60875 1.27026 1.37987 1.41215 1.49178 2.01465 2.40198 2.49919 2.57053 3.34954 3.51482 3.65225 4.01237 4.11412 4.11885 4.19889 4.31035 4.50788 4.65562 4.74157 4.79208 4.81201 4.83575 4.97557 5.05261 5.10662 5.11862 5.27190 5.33273 5.36956 5.56932 5.63397 5.69999 5.75678 5.76805 6.22193 6.46121 6.62795 6.95885 7.20249 7.33767 7.94884 8.45251 9.24711 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.008072 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.755711 B = 3467.838297 C = 4392.156115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.153 3.847 3 H 0.018 0.982 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.124 3.876 7 H 0.068 0.932 8 N -0.678 5.678 9 C 0.589 3.411 10 O -0.584 6.584 11 C -0.039 4.039 12 C -0.217 4.217 13 C 0.017 3.983 14 N -0.365 5.365 15 H 0.465 0.535 16 N -0.273 5.273 17 C 0.171 3.829 18 N -0.594 5.594 19 C -0.234 4.234 20 H 0.073 0.927 21 C -0.057 4.057 22 N -0.935 5.935 23 Si 0.949 3.051 24 H -0.263 1.263 25 H -0.303 1.303 26 H -0.292 1.292 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.408 0.592 35 H 0.157 0.843 36 H 0.238 0.762 37 H 0.048 0.952 38 H 0.001 0.999 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -12.060 -13.357 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.036 0.964 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.018 3.982 7 H 0.086 0.914 8 N -0.328 5.328 9 C 0.375 3.625 10 O -0.463 6.463 11 C -0.199 4.199 12 C -0.245 4.245 13 C -0.128 4.128 14 N -0.082 5.082 15 H 0.313 0.687 16 N -0.111 5.111 17 C 0.043 3.957 18 N -0.318 5.318 19 C -0.364 4.364 20 H 0.091 0.909 21 C -0.251 4.251 22 N -0.583 5.583 23 Si 0.779 3.221 24 H -0.187 1.187 25 H -0.231 1.231 26 H -0.219 1.219 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.245 0.755 35 H 0.175 0.825 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.019 0.981 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -3.110 -11.413 -13.449 17.911 hybrid contribution -0.135 -0.711 1.671 1.821 sum -3.245 -12.123 -11.778 17.211 Atomic orbital electron populations 1.21716 0.94749 1.01148 1.00872 1.20782 0.94161 0.93320 0.86927 0.96429 1.21961 0.94800 1.00841 0.98274 1.21662 0.97269 0.99991 0.95822 1.21597 0.96462 0.82174 0.97961 0.91377 1.45634 1.29452 1.07701 1.50006 1.17365 0.83123 0.83391 0.78663 1.90721 1.27169 1.85186 1.43272 1.21927 0.97094 0.95783 1.05088 1.22052 1.04539 0.91239 1.06649 1.23535 0.90302 1.01850 0.97085 1.43471 1.23458 1.04959 1.36358 0.68666 1.73457 1.16232 0.99060 1.22316 1.20879 0.84215 0.95422 0.95139 1.44236 1.02220 1.65447 1.19874 1.19421 0.94924 1.35542 0.86543 0.90914 1.25725 0.98960 1.01520 0.98934 1.70161 1.25069 1.46800 1.16245 0.85450 0.78634 0.78131 0.79854 1.18738 1.23127 1.21872 0.94540 0.90483 0.93361 0.92431 0.88984 0.90381 0.89781 0.75515 0.82542 0.74588 0.93340 0.98102 0.94852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.94 71.98 0.57 -3.91 16 2 C 0.15 6.01 3.50 44.98 0.16 6.17 16 3 H 0.02 0.73 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -3.63 5.21 30.67 0.16 -3.47 16 5 C -0.11 -3.38 5.59 30.62 0.17 -3.21 16 6 C 0.12 5.06 2.81 45.07 0.13 5.18 16 7 H 0.07 2.88 7.58 -2.39 -0.02 2.86 16 8 N -0.68 -26.98 4.91 -445.17 -2.19 -29.17 16 9 C 0.59 25.61 7.79 86.75 0.68 26.28 16 10 O -0.58 -29.64 16.59 -3.95 -0.07 -29.71 16 11 C -0.04 -1.41 7.13 42.46 0.30 -1.11 16 12 C -0.22 -6.28 10.81 22.41 0.24 -6.04 16 13 C 0.02 0.31 12.02 83.54 1.00 1.31 16 14 N -0.37 -6.87 6.83 -57.51 -0.39 -7.27 16 15 H 0.46 4.27 8.96 -219.99 -1.97 2.30 16 16 N -0.27 -8.07 11.92 -48.17 -0.57 -8.64 16 17 C 0.17 8.78 4.89 86.36 0.42 9.20 16 18 N -0.59 -29.53 2.91 -675.22 -1.96 -31.49 16 19 C -0.23 -12.90 8.60 84.03 0.72 -12.17 16 20 H 0.07 3.88 6.21 -2.91 -0.02 3.86 16 21 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 22 N -0.94 -59.11 11.14 21.65 0.24 -58.86 16 23 Si 0.95 47.89 29.58 68.60 2.03 49.92 16 24 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 26 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 27 H 0.04 1.44 7.62 -2.38 -0.02 1.42 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.72 7.44 -2.39 -0.02 1.70 16 30 H 0.06 1.76 6.40 -2.39 -0.02 1.74 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.41 14.82 6.50 -92.71 -0.60 14.22 16 35 H 0.16 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.24 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.05 2.99 6.06 -2.38 -0.01 2.98 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -80.44 316.49 0.57 -79.87 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -1.49 Total: 20.05 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 4.98 Total: 15.31 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -4.88 Total: -135.44 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.07 Total: -29.71 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -80.44 0.57 -79.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071366809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.510 kcal (2) G-P(sol) polarization free energy of solvation -80.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds