Wall clock time and date at job start Mon Mar 30 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30862 * 125.41389 * 2 1 4 4 C 1.33322 * 109.68329 * 179.74583 * 3 2 1 5 5 C 1.36665 * 107.78269 * 0.40384 * 4 3 2 6 6 C 1.46768 * 126.84102 * 179.87110 * 5 4 3 7 7 O 1.21683 * 120.00171 * 359.68239 * 6 5 4 8 8 N 1.34777 * 119.99565 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99724 * 179.72517 * 8 6 5 10 10 H 1.09002 * 110.64273 * 36.68972 * 9 8 6 11 11 C 1.54331 * 110.72128 * 273.54792 * 9 8 6 12 12 N 1.47018 * 107.27325 * 219.44405 * 11 9 8 13 13 C 1.36939 * 125.65082 * 178.90184 * 12 11 9 14 14 H 1.07995 * 120.00183 * 180.02562 * 13 12 11 15 15 C 1.38810 * 119.99674 * 0.03078 * 13 12 11 16 16 N 1.31625 * 120.00285 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99915 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46942 * 89.99598 * 17 15 13 19 19 H 1.48501 * 109.46928 * 209.99534 * 17 15 13 20 20 H 1.48493 * 109.46807 * 329.99745 * 17 15 13 21 21 C 1.47423 * 108.70026 * 358.94115 * 12 11 9 22 22 C 1.54908 * 104.83651 * 24.13013 * 21 12 11 23 23 H 1.08993 * 111.00404 * 81.06192 * 22 21 12 24 24 C 1.52997 * 111.00363 * 204.91897 * 22 21 12 25 25 N 1.34491 * 125.42114 * 179.97438 * 2 1 3 26 26 H 0.97003 * 126.47236 * 0.02951 * 25 2 1 27 27 H 1.09003 * 109.47468 * 270.00114 * 1 2 3 28 28 H 1.08998 * 109.47359 * 30.00370 * 1 2 3 29 29 H 1.08999 * 109.46977 * 150.00486 * 1 2 3 30 30 H 1.07996 * 126.10991 * 180.24634 * 4 3 2 31 31 H 0.97000 * 120.00483 * 359.72950 * 8 6 5 32 32 H 1.09005 * 109.87992 * 338.86471 * 11 9 8 33 33 H 1.09004 * 109.87898 * 99.86788 * 11 9 8 34 34 H 0.96993 * 120.00354 * 180.02562 * 16 15 13 35 35 H 1.08999 * 110.36661 * 142.96791 * 21 12 11 36 36 H 1.09006 * 110.36813 * 265.17595 * 21 12 11 37 37 H 1.09003 * 109.47073 * 172.19747 * 24 22 21 38 38 H 1.09002 * 109.47430 * 292.18938 * 24 22 21 39 39 H 1.08996 * 109.47527 * 52.19466 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5485 0.7051 0.0056 5 6 3.5975 -0.6607 0.0001 6 6 4.8029 -1.4981 0.0006 7 8 5.9038 -0.9798 0.0005 8 7 4.6903 -2.8411 -0.0048 9 6 5.8935 -3.6770 -0.0104 10 1 6.6768 -3.2270 0.5995 11 6 6.3904 -3.9092 -1.4530 12 7 6.8428 -5.3053 -1.5395 13 6 7.3374 -5.9161 -2.6609 14 1 7.6440 -6.9508 -2.6215 15 6 7.4449 -5.2050 -3.8482 16 7 7.0709 -3.9439 -3.8962 17 14 8.1203 -6.0378 -5.3778 18 1 7.0046 -6.6561 -6.1383 19 1 8.8018 -5.0304 -6.2298 20 1 9.0913 -7.0889 -4.9811 21 6 6.6748 -5.9393 -0.2191 22 6 5.5670 -5.1124 0.4798 23 1 4.5774 -5.4238 0.1455 24 6 5.6859 -5.2123 2.0019 25 7 2.2864 -1.0960 0.0005 26 1 1.9850 -2.0180 0.0005 27 1 -0.3634 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 4.3977 1.3723 0.0107 31 1 3.8127 -3.2543 -0.0051 32 1 5.5761 -3.7390 -2.1574 33 1 7.2178 -3.2346 -1.6731 34 1 7.1456 -3.4471 -4.7259 35 1 6.3591 -6.9762 -0.3336 36 1 7.6044 -5.8870 0.3478 37 1 4.9875 -4.5168 2.4674 38 1 5.4518 -6.2286 2.3188 39 1 6.7030 -4.9627 2.3041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079497586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:56 Heat of formation + Delta-G solvation = 16.030513 kcal Electronic energy + Delta-G solvation = -21706.850007 eV Core-core repulsion = 18456.793641 eV Total energy + Delta-G solvation = -3250.056366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -43.26965 -40.82075 -39.07551 -35.76911 -34.53564 -33.60234 -32.78315 -32.18679 -29.81479 -28.25066 -27.35115 -25.55634 -23.96516 -22.36655 -21.88056 -21.53009 -21.10566 -19.52541 -18.91684 -17.47963 -17.14158 -16.87651 -16.67690 -15.84136 -15.66150 -15.39075 -14.97757 -14.80853 -14.49005 -14.27741 -14.10797 -13.78798 -13.41291 -13.35872 -13.21380 -13.07216 -12.90432 -12.61190 -12.23450 -12.11447 -11.88388 -11.70664 -11.56831 -11.50343 -11.24390 -11.08493 -10.77260 -10.20891 -9.54394 -8.95541 -7.87258 -5.25461 0.20657 1.42978 1.45819 1.54730 1.71682 1.79901 2.05631 2.26415 2.47593 3.31485 3.37862 3.53328 3.69449 3.83099 4.00470 4.06018 4.08641 4.29097 4.44964 4.56048 4.61473 4.69162 4.78243 4.84206 4.86455 5.02523 5.06314 5.10448 5.13451 5.25440 5.42477 5.43986 5.47101 5.57135 5.73457 6.13872 6.26214 6.41493 6.85437 7.02358 7.09055 7.73250 8.36567 9.21956 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018557 B = 0.004597 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.516222 B = 6089.991608 C = 6873.700981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.250 3.750 3 N -0.528 5.528 4 C 0.056 3.944 5 C -0.097 4.097 6 C 0.592 3.408 7 O -0.570 6.570 8 N -0.696 5.696 9 C 0.136 3.864 10 H 0.077 0.923 11 C 0.188 3.812 12 N -0.628 5.628 13 C -0.243 4.243 14 H 0.090 0.910 15 C -0.069 4.069 16 N -0.954 5.954 17 Si 0.980 3.020 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.265 1.265 21 C 0.132 3.868 22 C -0.092 4.092 23 H 0.095 0.905 24 C -0.130 4.130 25 N -0.537 5.537 26 H 0.438 0.562 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.409 0.591 32 H 0.016 0.984 33 H -0.010 1.010 34 H 0.244 0.756 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.105 0.816 12.587 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.015 4.015 3 N -0.249 5.249 4 C -0.098 4.098 5 C -0.213 4.213 6 C 0.379 3.621 7 O -0.449 6.449 8 N -0.346 5.346 9 C 0.031 3.969 10 H 0.095 0.905 11 C 0.062 3.938 12 N -0.354 5.354 13 C -0.371 4.371 14 H 0.108 0.892 15 C -0.262 4.262 16 N -0.603 5.603 17 Si 0.808 3.192 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.190 1.190 21 C 0.007 3.993 22 C -0.111 4.111 23 H 0.113 0.887 24 C -0.187 4.187 25 N -0.144 5.144 26 H 0.280 0.720 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.195 0.805 31 H 0.245 0.755 32 H 0.034 0.966 33 H 0.008 0.992 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.516 1.977 12.394 19.956 hybrid contribution 0.839 -1.300 -1.392 2.081 sum -14.677 0.677 11.002 18.355 Atomic orbital electron populations 1.20565 0.80573 1.06073 1.05756 1.24376 0.97545 0.80753 0.98798 1.70211 1.01892 1.29845 1.22917 1.22751 0.95347 0.91736 0.99985 1.20801 0.84263 0.95575 1.20662 1.17156 0.87094 0.82063 0.75743 1.90842 1.27909 1.73987 1.52143 1.45563 1.09852 1.04896 1.74305 1.22136 0.87023 0.91139 0.96650 0.90514 1.21094 0.95641 0.85182 0.91911 1.44720 1.74997 1.08647 1.07051 1.19535 1.34430 0.95650 0.87532 0.89219 1.25731 1.02479 0.96706 1.01259 1.70239 1.54500 1.09533 1.26060 0.85051 0.78036 0.77113 0.78986 1.20865 1.22634 1.18969 1.21876 0.95831 0.96522 0.85110 1.22541 0.99801 0.91621 0.97163 0.88703 1.21665 1.02197 1.03245 0.91612 1.43110 1.04540 1.11250 1.55465 0.72034 0.87492 0.88380 0.87701 0.80455 0.75497 0.96585 0.99201 0.94693 0.92435 0.95598 0.91338 0.90133 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.51 71.23 0.75 0.14 16 2 C 0.25 4.85 8.12 138.20 1.12 5.97 16 3 N -0.53 -14.35 11.20 -187.40 -2.10 -16.45 16 4 C 0.06 1.69 11.66 84.10 0.98 2.67 16 5 C -0.10 -2.80 7.08 40.01 0.28 -2.52 16 6 C 0.59 21.04 7.79 86.47 0.67 21.72 16 7 O -0.57 -25.80 16.63 -4.29 -0.07 -25.87 16 8 N -0.70 -21.61 5.13 -440.76 -2.26 -23.87 16 9 C 0.14 5.14 2.70 46.18 0.12 5.27 16 10 H 0.08 3.14 7.59 -2.39 -0.02 3.12 16 11 C 0.19 9.75 5.12 86.73 0.44 10.19 16 12 N -0.63 -32.43 3.39 -691.98 -2.35 -34.78 16 13 C -0.24 -13.71 10.28 84.03 0.86 -12.84 16 14 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 15 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 16 N -0.95 -60.24 10.31 21.65 0.22 -60.01 16 17 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 C 0.13 5.06 6.70 86.85 0.58 5.64 16 22 C -0.09 -2.72 3.25 -9.40 -0.03 -2.75 16 23 H 0.09 2.51 8.00 -2.39 -0.02 2.49 16 24 C -0.13 -2.79 9.31 71.98 0.67 -2.12 16 25 N -0.54 -10.32 6.07 -176.11 -1.07 -11.39 16 26 H 0.44 5.03 8.32 -92.71 -0.77 4.26 16 27 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.36 16 30 H 0.18 5.33 8.06 -2.91 -0.02 5.30 16 31 H 0.41 9.21 7.76 -92.71 -0.72 8.49 16 32 H 0.02 0.92 7.27 -2.38 -0.02 0.90 16 33 H -0.01 -0.65 7.51 -2.39 -0.02 -0.66 16 34 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.03 1.00 7.99 -2.38 -0.02 0.98 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 Total: -1.00 -82.60 327.16 0.91 -81.69 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.41 Total: 14.25 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 6.93 Total: 27.80 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -7.55 Total: -146.51 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.07 Total: -25.87 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -82.60 0.91 -81.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079497586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.718 kcal (2) G-P(sol) polarization free energy of solvation -82.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds