Wall clock time and date at job start Mon Mar 30 2020 23:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.42104 * 2 1 4 4 C 1.33322 * 109.68862 * 179.73201 * 3 2 1 5 5 C 1.36660 * 107.78188 * 0.40510 * 4 3 2 6 6 C 1.46767 * 126.84438 * 179.86897 * 5 4 3 7 7 O 1.21680 * 119.99988 * 350.63538 * 6 5 4 8 8 N 1.34780 * 119.99993 * 170.90382 * 6 5 4 9 9 C 1.46501 * 120.00111 * 359.69081 * 8 6 5 10 10 C 1.46498 * 119.99772 * 179.69540 * 8 6 5 11 11 C 1.52999 * 109.47098 * 95.31586 * 10 8 6 12 12 H 1.09002 * 112.96284 * 67.63394 * 11 10 8 13 13 C 1.53945 * 113.77156 * 295.95353 * 11 10 8 14 14 C 1.53946 * 86.28926 * 222.09346 * 13 11 10 15 15 N 1.47583 * 113.76847 * 199.30877 * 11 10 8 16 16 C 1.36936 * 134.49482 * 318.93440 * 15 11 10 17 17 H 1.08000 * 119.99638 * 6.17055 * 16 15 11 18 18 C 1.38814 * 120.00186 * 186.16683 * 16 15 11 19 19 N 1.31613 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47483 * 90.00478 * 20 18 16 22 22 H 1.48510 * 109.46931 * 209.99910 * 20 18 16 23 23 H 1.48499 * 109.47604 * 329.99635 * 20 18 16 24 24 N 1.34498 * 125.41728 * 179.97438 * 2 1 3 25 25 H 0.97004 * 126.46944 * 0.03873 * 24 2 1 26 26 H 1.09005 * 109.46754 * 270.02265 * 1 2 3 27 27 H 1.08999 * 109.47020 * 30.01438 * 1 2 3 28 28 H 1.09000 * 109.47441 * 150.02310 * 1 2 3 29 29 H 1.07999 * 126.10875 * 180.29305 * 4 3 2 30 30 H 1.09001 * 109.46708 * 83.87174 * 9 8 6 31 31 H 1.08998 * 109.47430 * 203.87818 * 9 8 6 32 32 H 1.08999 * 109.47232 * 323.87695 * 9 8 6 33 33 H 1.09002 * 109.46812 * 215.31170 * 10 8 6 34 34 H 1.08994 * 109.47130 * 335.31716 * 10 8 6 35 35 H 1.09003 * 113.73413 * 336.43802 * 13 11 10 36 36 H 1.08996 * 113.74251 * 107.63664 * 13 11 10 37 37 H 1.09004 * 113.76545 * 137.90803 * 14 13 11 38 38 H 1.08999 * 113.76968 * 269.18617 * 14 13 11 39 39 H 0.96999 * 120.00016 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0059 5 6 3.5976 -0.6608 0.0006 6 6 4.8029 -1.4983 0.0013 7 8 5.8964 -0.9910 -0.1643 8 7 4.6980 -2.8301 0.1802 9 6 3.3815 -3.4409 0.3805 10 6 5.9004 -3.6669 0.1743 11 6 6.3760 -3.8865 1.6118 12 1 5.6888 -4.4960 2.1987 13 6 6.8217 -2.5954 2.3221 14 6 7.9958 -3.4236 2.8748 15 7 7.7850 -4.3135 1.7136 16 6 8.5772 -5.1834 1.0130 17 1 8.2004 -5.6552 0.1175 18 6 9.8644 -5.4588 1.4536 19 7 10.3233 -4.8841 2.5451 20 14 10.9451 -6.6450 0.4975 21 1 11.7217 -5.8951 -0.5222 22 1 11.8798 -7.3247 1.4301 23 1 10.0933 -7.6583 -0.1755 24 7 2.2865 -1.0961 0.0005 25 1 1.9849 -2.0181 0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 4.3979 1.3721 0.0118 30 1 2.9138 -3.6217 -0.5873 31 1 3.4964 -4.3861 0.9109 32 1 2.7548 -2.7691 0.9670 33 1 5.6712 -4.6291 -0.2835 34 1 6.6855 -3.1708 -0.3963 35 1 7.1270 -1.8022 1.6396 36 1 6.1253 -2.2528 3.0875 37 1 8.9503 -2.8974 2.8590 38 1 7.7867 -3.8963 3.8344 39 1 11.2229 -5.0762 2.8529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085520168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:04 Heat of formation + Delta-G solvation = 101.722188 kcal Electronic energy + Delta-G solvation = -21804.695413 eV Core-core repulsion = 18558.354916 eV Total energy + Delta-G solvation = -3246.340496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.47107 -39.55954 -37.59652 -35.60366 -32.94409 -32.21222 -31.99316 -28.85310 -27.82712 -27.78803 -26.37877 -23.41643 -23.13967 -21.85473 -21.10221 -19.96546 -18.98066 -17.63003 -16.73063 -16.36910 -16.07715 -15.88897 -15.17398 -14.71511 -14.21389 -14.01800 -13.90849 -13.57508 -13.43905 -13.31358 -12.90627 -12.78063 -12.64679 -12.34133 -11.98991 -11.37806 -11.03451 -10.90415 -10.69197 -10.45340 -10.40629 -10.30454 -9.95161 -9.82059 -9.67635 -9.48292 -8.79243 -8.67321 -8.40019 -6.82975 -5.73278 -3.05291 1.22068 2.63028 2.67986 3.02016 3.37570 3.41250 3.45296 3.47514 4.10934 4.41167 4.48899 4.63646 4.75358 4.95556 5.06835 5.11597 5.20268 5.28752 5.33307 5.46399 5.52911 5.57393 5.66870 5.86829 5.91627 6.08718 6.36450 6.41950 6.50723 6.64146 6.75951 6.81633 6.97649 7.30243 7.35821 7.54081 7.63964 7.76087 8.01801 8.21375 9.07535 9.74585 10.65639 11.44503 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.003772 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.229840 B = 7421.317724 C = 7577.948933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.224 3.776 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.079 4.079 6 C 0.590 3.410 7 O -0.511 6.511 8 N -0.607 5.607 9 C 0.061 3.939 10 C 0.116 3.884 11 C 0.127 3.873 12 H 0.040 0.960 13 C -0.160 4.160 14 C 0.166 3.834 15 N -0.599 5.599 16 C -0.225 4.225 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.282 1.282 24 N -0.559 5.559 25 H 0.425 0.575 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.075 0.925 29 H 0.184 0.816 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 5.652 -4.076 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.040 4.040 3 N -0.217 5.217 4 C -0.087 4.087 5 C -0.194 4.194 6 C 0.377 3.623 7 O -0.385 6.385 8 N -0.340 5.340 9 C -0.083 4.083 10 C -0.007 4.007 11 C 0.019 3.981 12 H 0.057 0.943 13 C -0.198 4.198 14 C 0.040 3.960 15 N -0.326 5.326 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.208 1.208 24 N -0.172 5.172 25 H 0.271 0.729 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.201 0.799 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.904 6.495 -4.230 22.295 hybrid contribution 0.677 -2.231 -0.303 2.351 sum -20.228 4.264 -4.533 21.163 Atomic orbital electron populations 1.20278 0.84441 1.04389 1.03968 1.23484 0.95904 0.82078 1.02511 1.70168 1.02179 1.28429 1.20883 1.22664 0.94680 0.91289 1.00038 1.21292 0.83695 0.96031 1.18432 1.16881 0.86847 0.81225 0.77306 1.90884 1.26208 1.72346 1.49074 1.47693 1.07854 1.06639 1.71831 1.22124 0.85227 1.00186 1.00805 1.21915 0.85669 0.93493 0.99588 1.22508 0.88921 0.93729 0.92939 0.94317 1.23838 0.99198 0.97206 0.99566 1.22129 0.95886 0.88362 0.89581 1.45990 1.03866 1.49256 1.33446 1.18969 0.94023 1.18058 1.04198 0.90413 1.24803 0.97657 1.00342 0.97496 1.69837 1.17038 1.46027 1.23612 0.86164 0.80475 0.80574 0.78782 1.21499 1.21690 1.20752 1.44348 1.06217 1.10627 1.56020 0.72855 0.89662 0.88746 0.90596 0.79877 0.92490 0.89246 0.91537 0.91242 0.88443 0.89444 0.93982 0.91631 0.95601 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.22 2.18 8.12 -155.61 -1.26 0.92 16 3 N -0.50 -6.41 11.20 -10.58 -0.12 -6.53 16 4 C 0.07 0.91 11.67 -17.47 -0.20 0.71 16 5 C -0.08 -1.04 6.66 -82.14 -0.55 -1.59 16 6 C 0.59 9.37 7.19 -12.81 -0.09 9.28 16 7 O -0.51 -10.09 14.78 5.21 0.08 -10.01 16 8 N -0.61 -8.60 2.78 -183.10 -0.51 -9.11 16 9 C 0.06 0.54 8.93 59.85 0.53 1.08 16 10 C 0.12 2.05 5.38 -4.04 -0.02 2.03 16 11 C 0.13 2.61 4.58 -66.86 -0.31 2.30 16 12 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.16 -3.34 7.22 -25.79 -0.19 -3.52 16 14 C 0.17 4.12 7.38 -2.85 -0.02 4.10 16 15 N -0.60 -15.57 3.58 -169.71 -0.61 -16.18 16 16 C -0.22 -6.32 10.51 -15.06 -0.16 -6.48 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.87 11.57 55.49 0.64 -27.23 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 N -0.56 -5.29 5.13 -7.02 -0.04 -5.33 16 25 H 0.42 2.72 5.07 -40.82 -0.21 2.51 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.18 2.37 8.06 -52.49 -0.42 1.94 16 30 H 0.06 0.38 7.78 -51.93 -0.40 -0.03 16 31 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 32 H 0.07 0.50 5.14 -51.93 -0.27 0.23 16 33 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 34 H 0.10 2.04 7.27 -51.93 -0.38 1.66 16 35 H 0.09 1.96 6.48 -51.93 -0.34 1.62 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.80 7.47 -51.93 -0.39 1.41 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -35.54 321.97 -8.03 -43.57 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.32 Total: 0.05 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.98 Total: 8.56 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.63 Total: -64.38 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.54 -8.03 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085520168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.293 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds