Wall clock time and date at job start Mon Mar 30 2020 23:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.42104 * 2 1 4 4 C 1.33322 * 109.68862 * 179.73201 * 3 2 1 5 5 C 1.36660 * 107.78188 * 0.40510 * 4 3 2 6 6 C 1.46767 * 126.84438 * 179.86897 * 5 4 3 7 7 O 1.21680 * 119.99988 * 350.63538 * 6 5 4 8 8 N 1.34780 * 119.99993 * 170.90382 * 6 5 4 9 9 C 1.46501 * 120.00111 * 359.69081 * 8 6 5 10 10 C 1.46498 * 119.99772 * 179.69540 * 8 6 5 11 11 C 1.52999 * 109.47098 * 95.31586 * 10 8 6 12 12 H 1.09002 * 112.96284 * 67.63394 * 11 10 8 13 13 C 1.53945 * 113.77156 * 295.95353 * 11 10 8 14 14 C 1.53946 * 86.28926 * 222.09346 * 13 11 10 15 15 N 1.47583 * 113.76847 * 199.30877 * 11 10 8 16 16 C 1.36936 * 134.49482 * 318.93440 * 15 11 10 17 17 H 1.08000 * 119.99638 * 6.17055 * 16 15 11 18 18 C 1.38814 * 120.00186 * 186.16683 * 16 15 11 19 19 N 1.31613 * 119.99777 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47483 * 90.00478 * 20 18 16 22 22 H 1.48510 * 109.46931 * 209.99910 * 20 18 16 23 23 H 1.48499 * 109.47604 * 329.99635 * 20 18 16 24 24 N 1.34498 * 125.41728 * 179.97438 * 2 1 3 25 25 H 0.97004 * 126.46944 * 0.03873 * 24 2 1 26 26 H 1.09005 * 109.46754 * 270.02265 * 1 2 3 27 27 H 1.08999 * 109.47020 * 30.01438 * 1 2 3 28 28 H 1.09000 * 109.47441 * 150.02310 * 1 2 3 29 29 H 1.07999 * 126.10875 * 180.29305 * 4 3 2 30 30 H 1.09001 * 109.46708 * 83.87174 * 9 8 6 31 31 H 1.08998 * 109.47430 * 203.87818 * 9 8 6 32 32 H 1.08999 * 109.47232 * 323.87695 * 9 8 6 33 33 H 1.09002 * 109.46812 * 215.31170 * 10 8 6 34 34 H 1.08994 * 109.47130 * 335.31716 * 10 8 6 35 35 H 1.09003 * 113.73413 * 336.43802 * 13 11 10 36 36 H 1.08996 * 113.74251 * 107.63664 * 13 11 10 37 37 H 1.09004 * 113.76545 * 137.90803 * 14 13 11 38 38 H 1.08999 * 113.76968 * 269.18617 * 14 13 11 39 39 H 0.96999 * 120.00016 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 0.0059 5 6 3.5976 -0.6608 0.0006 6 6 4.8029 -1.4983 0.0013 7 8 5.8964 -0.9910 -0.1643 8 7 4.6980 -2.8301 0.1802 9 6 3.3815 -3.4409 0.3805 10 6 5.9004 -3.6669 0.1743 11 6 6.3760 -3.8865 1.6118 12 1 5.6888 -4.4960 2.1987 13 6 6.8217 -2.5954 2.3221 14 6 7.9958 -3.4236 2.8748 15 7 7.7850 -4.3135 1.7136 16 6 8.5772 -5.1834 1.0130 17 1 8.2004 -5.6552 0.1175 18 6 9.8644 -5.4588 1.4536 19 7 10.3233 -4.8841 2.5451 20 14 10.9451 -6.6450 0.4975 21 1 11.7217 -5.8951 -0.5222 22 1 11.8798 -7.3247 1.4301 23 1 10.0933 -7.6583 -0.1755 24 7 2.2865 -1.0961 0.0005 25 1 1.9849 -2.0181 0.0004 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 4.3979 1.3721 0.0118 30 1 2.9138 -3.6217 -0.5873 31 1 3.4964 -4.3861 0.9109 32 1 2.7548 -2.7691 0.9670 33 1 5.6712 -4.6291 -0.2835 34 1 6.6855 -3.1708 -0.3963 35 1 7.1270 -1.8022 1.6396 36 1 6.1253 -2.2528 3.0875 37 1 8.9503 -2.8974 2.8590 38 1 7.7867 -3.8963 3.8344 39 1 11.2229 -5.0762 2.8529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085520168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:03 Heat of formation + Delta-G solvation = 77.025310 kcal Electronic energy + Delta-G solvation = -21805.766350 eV Core-core repulsion = 18558.354916 eV Total energy + Delta-G solvation = -3247.411433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.36284 -40.86680 -39.31460 -36.80930 -34.31527 -33.78401 -32.81614 -30.13816 -29.85382 -28.65176 -27.35804 -25.33043 -24.70107 -22.97682 -22.14044 -20.99922 -20.75838 -18.78561 -18.51127 -17.48060 -17.35018 -16.99078 -16.68512 -16.20741 -15.80549 -15.19765 -15.09474 -15.03112 -14.27024 -14.20450 -14.18104 -13.93522 -13.45421 -13.35415 -13.19706 -13.08289 -12.93199 -12.61502 -12.54217 -12.27031 -11.84846 -11.62499 -11.43999 -11.31888 -11.14278 -11.03855 -10.86378 -9.87720 -9.46885 -8.89723 -7.89976 -5.23079 0.24395 1.44137 1.47525 1.55053 1.66750 1.75411 2.04500 2.28199 2.49095 3.27899 3.35516 3.42131 3.59831 3.88371 3.95772 4.06653 4.17541 4.26443 4.31075 4.40151 4.48425 4.62247 4.67471 4.72482 4.80313 4.82334 4.88322 4.99913 5.06021 5.15890 5.18934 5.37646 5.48883 5.52349 5.71293 5.92691 6.23596 6.30882 6.88156 6.90776 7.03418 7.61682 8.58301 9.28520 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.003772 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.229840 B = 7421.317724 C = 7577.948933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.243 3.757 3 N -0.530 5.530 4 C 0.054 3.946 5 C -0.092 4.092 6 C 0.587 3.413 7 O -0.564 6.564 8 N -0.602 5.602 9 C 0.050 3.950 10 C 0.130 3.870 11 C 0.136 3.864 12 H 0.064 0.936 13 C -0.137 4.137 14 C 0.160 3.840 15 N -0.628 5.628 16 C -0.229 4.229 17 H 0.090 0.910 18 C -0.072 4.072 19 N -0.958 5.958 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.296 1.296 23 H -0.262 1.262 24 N -0.543 5.543 25 H 0.440 0.560 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.175 0.825 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.346 4.336 -4.922 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.021 4.021 3 N -0.250 5.250 4 C -0.100 4.100 5 C -0.208 4.208 6 C 0.376 3.624 7 O -0.442 6.442 8 N -0.334 5.334 9 C -0.092 4.092 10 C 0.006 3.994 11 C 0.029 3.971 12 H 0.081 0.919 13 C -0.175 4.175 14 C 0.035 3.965 15 N -0.355 5.355 16 C -0.357 4.357 17 H 0.107 0.893 18 C -0.265 4.265 19 N -0.607 5.607 20 Si 0.807 3.193 21 H -0.217 1.217 22 H -0.223 1.223 23 H -0.187 1.187 24 N -0.157 5.157 25 H 0.291 0.709 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.193 0.807 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.782 5.136 -5.092 25.816 hybrid contribution 1.687 -1.746 -0.033 2.428 sum -23.095 3.391 -5.125 23.898 Atomic orbital electron populations 1.20564 0.80718 1.06146 1.05643 1.24406 0.97597 0.81179 0.98967 1.70193 1.01954 1.30162 1.22740 1.22726 0.95276 0.91773 1.00252 1.20765 0.84317 0.95352 1.20378 1.17220 0.86942 0.81747 0.76446 1.90859 1.28353 1.73451 1.51535 1.47662 1.08782 1.05899 1.71101 1.22506 0.82663 1.00763 1.03219 1.21472 0.86427 0.94443 0.97028 1.22669 0.86806 0.92702 0.94915 0.91910 1.23550 0.97760 0.96682 0.99481 1.22047 0.95708 0.89090 0.89679 1.46313 1.06540 1.49091 1.33516 1.19435 0.94499 1.17254 1.04493 0.89256 1.25693 0.99334 1.02633 0.98836 1.70038 1.17021 1.47983 1.25627 0.85078 0.78497 0.78604 0.77161 1.21696 1.22263 1.18681 1.44218 1.04558 1.11551 1.55409 0.70931 0.87839 0.88430 0.87428 0.80730 0.89323 0.87945 0.89797 0.89073 0.92280 0.91300 0.91143 0.95416 0.96031 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.24 3.96 8.12 138.20 1.12 5.08 16 3 N -0.53 -12.95 11.20 -187.39 -2.10 -15.05 16 4 C 0.05 1.46 11.67 84.10 0.98 2.44 16 5 C -0.09 -2.32 6.66 40.01 0.27 -2.06 16 6 C 0.59 18.36 7.19 86.47 0.62 18.98 16 7 O -0.56 -23.13 14.78 -4.29 -0.06 -23.19 16 8 N -0.60 -15.84 2.78 -851.42 -2.37 -18.20 16 9 C 0.05 0.68 8.93 127.77 1.14 1.82 16 10 C 0.13 4.45 5.38 86.38 0.46 4.92 16 11 C 0.14 5.41 4.58 45.09 0.21 5.61 16 12 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.14 -5.72 7.22 31.25 0.23 -5.49 16 14 C 0.16 8.24 7.38 86.44 0.64 8.88 16 15 N -0.63 -32.97 3.58 -690.84 -2.47 -35.44 16 16 C -0.23 -12.93 10.51 84.03 0.88 -12.05 16 17 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.96 -60.17 11.57 21.65 0.25 -59.92 16 20 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 24 N -0.54 -8.47 5.13 -176.11 -0.90 -9.37 16 25 H 0.44 3.58 5.07 -92.71 -0.47 3.11 16 26 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.09 0.71 7.78 -2.39 -0.02 0.69 16 31 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 32 H 0.08 0.86 5.14 -2.39 -0.01 0.85 16 33 H 0.09 2.72 8.11 -2.39 -0.02 2.70 16 34 H 0.06 2.51 7.27 -2.39 -0.02 2.49 16 35 H 0.07 3.19 6.48 -2.39 -0.02 3.17 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.03 1.60 7.47 -2.38 -0.02 1.58 16 38 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -81.67 321.97 2.73 -78.94 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.60 Total: 8.82 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 7.77 Total: 24.71 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -7.59 Total: -137.99 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.19 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -81.67 2.73 -78.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085520168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.965 kcal (2) G-P(sol) polarization free energy of solvation -81.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds