Wall clock time and date at job start Mon Mar 30 2020 23:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 126.38999 * 2 1 4 4 C 1.41501 * 105.50349 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.51323 * 179.97438 * 4 3 2 6 6 O 1.21571 * 120.00397 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46490 * 120.00264 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47452 * 179.97438 * 8 7 5 10 10 H 1.08999 * 112.84491 * 43.80405 * 9 8 7 11 11 C 1.53778 * 113.61688 * 174.99728 * 9 8 7 12 12 C 1.53777 * 87.08190 * 140.06642 * 11 9 8 13 13 H 1.09001 * 113.61257 * 89.19828 * 12 11 9 14 14 N 1.46496 * 113.61861 * 220.01737 * 12 11 9 15 15 C 1.36934 * 120.00548 * 203.46995 * 14 12 11 16 16 H 1.08004 * 119.99288 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.31624 * 120.00257 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.53775 * 87.17460 * 334.61245 * 12 11 9 24 24 N 1.31800 * 106.96492 * 0.24062 * 4 3 2 25 25 N 1.28469 * 110.07672 * 359.59361 * 24 4 3 26 26 H 0.97001 * 124.88954 * 180.13076 * 25 24 4 27 27 H 1.08997 * 109.47025 * 89.99784 * 1 2 3 28 28 H 1.08999 * 109.46969 * 209.99968 * 1 2 3 29 29 H 1.08999 * 109.47010 * 330.00086 * 1 2 3 30 30 H 1.08004 * 127.24499 * 359.97438 * 3 2 1 31 31 H 0.97000 * 119.99166 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47110 * 59.99725 * 8 7 5 33 33 H 1.09004 * 109.47357 * 300.00154 * 8 7 5 34 34 H 1.09002 * 113.61543 * 25.51826 * 11 9 8 35 35 H 1.09002 * 113.69195 * 254.62894 * 11 9 8 36 36 H 0.96999 * 119.99694 * 23.47519 * 14 12 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09000 * 113.62135 * 139.93227 * 23 12 11 39 39 H 1.08998 * 113.61872 * 270.84084 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5852 0.0006 5 6 4.8765 1.3810 0.0003 6 8 4.8214 2.5955 -0.0010 7 7 6.0731 0.7607 0.0005 8 6 7.3073 1.5499 -0.0004 9 6 8.5141 0.6094 0.0006 10 1 8.4023 -0.2233 -0.6938 11 6 9.8628 1.3377 -0.1231 12 6 10.4092 0.3356 0.9075 13 1 10.8168 -0.5713 0.4609 14 7 11.3101 0.9391 1.8925 15 6 12.2287 0.1624 2.5467 16 1 12.2892 -0.8952 2.3361 17 6 13.0819 0.7341 3.4804 18 7 13.9652 -0.0124 4.1088 19 14 12.9775 2.5634 3.8441 20 1 13.8851 3.3024 2.9300 21 1 11.5825 3.0299 3.6401 22 1 13.3820 2.8122 5.2511 23 6 8.9639 0.1795 1.4088 24 7 3.5420 -0.7297 -0.0044 25 7 2.3080 -1.0872 0.0006 26 1 1.9965 -2.0058 0.0002 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0058 2.1259 -0.0004 31 1 6.1170 -0.2083 0.0011 32 1 7.3368 2.1792 0.8891 33 1 7.3364 2.1780 -0.8908 34 1 9.8386 2.3659 0.2381 35 1 10.3217 1.2456 -1.1075 36 1 11.2558 1.8890 2.0814 37 1 14.5616 0.3872 4.7611 38 1 8.6968 -0.8473 1.6588 39 1 8.6932 0.8903 2.1895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086034424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:31 Heat of formation + Delta-G solvation = 64.104322 kcal Electronic energy + Delta-G solvation = -20463.019845 eV Core-core repulsion = 17215.048116 eV Total energy + Delta-G solvation = -3247.971729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98938 -39.59740 -38.43040 -34.75012 -33.42184 -33.01382 -32.16725 -30.70700 -27.98714 -27.23957 -25.16930 -24.37231 -23.17626 -21.58489 -20.92495 -20.20560 -19.18069 -18.02238 -17.39779 -17.03953 -16.22589 -15.96531 -15.21476 -14.87521 -14.51680 -14.20463 -14.17745 -13.74040 -13.54199 -13.45585 -13.12885 -12.72493 -12.63446 -12.18620 -11.93626 -11.58926 -11.54186 -11.19256 -10.87494 -10.48612 -10.41241 -10.13225 -10.00091 -9.77373 -9.72189 -9.52429 -9.30347 -9.01540 -8.87102 -7.24472 -5.76507 -3.11789 1.32338 1.77751 2.47859 3.13824 3.31085 3.39743 3.43046 3.47315 4.17059 4.27372 4.56808 4.60282 4.88545 4.92536 4.97075 5.09395 5.18454 5.25898 5.33821 5.42597 5.46880 5.55653 5.68019 5.76732 5.84362 5.88748 6.05757 6.21116 6.22677 6.27590 6.42499 6.55145 6.61278 6.72747 7.02233 7.35267 7.62882 8.00244 8.15111 8.43433 9.21497 9.94319 10.14317 11.41760 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.002764 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.418513 B =10128.708995 C =10253.534133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.011 3.989 3 C -0.179 4.179 4 C -0.008 4.008 5 C 0.600 3.400 6 O -0.535 6.535 7 N -0.711 5.711 8 C 0.131 3.869 9 C -0.127 4.127 10 H 0.091 0.909 11 C -0.144 4.144 12 C 0.171 3.829 13 H 0.083 0.917 14 N -0.738 5.738 15 C -0.247 4.247 16 H 0.091 0.909 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.884 3.116 20 H -0.284 1.284 21 H -0.276 1.276 22 H -0.291 1.291 23 C -0.161 4.161 24 N -0.258 5.258 25 N -0.381 5.381 26 H 0.444 0.556 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.407 0.593 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.362 0.638 37 H 0.259 0.741 38 H 0.059 0.941 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.898 -1.751 -11.269 30.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.169 4.169 5 C 0.383 3.617 6 O -0.410 6.410 7 N -0.362 5.362 8 C 0.008 3.992 9 C -0.146 4.146 10 H 0.110 0.890 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.101 0.899 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.108 0.892 17 C -0.192 4.192 18 N -0.581 5.581 19 Si 0.715 3.285 20 H -0.210 1.210 21 H -0.202 1.202 22 H -0.217 1.217 23 C -0.202 4.202 24 N -0.094 5.094 25 N -0.096 5.096 26 H 0.289 0.711 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.180 0.820 31 H 0.242 0.758 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.034 -1.961 -11.162 29.314 hybrid contribution -0.665 0.958 0.425 1.241 sum -27.699 -1.004 -10.737 29.725 Atomic orbital electron populations 1.20359 0.86449 1.04085 1.03432 1.21481 0.95469 0.87162 1.07372 1.21545 0.90465 0.99823 1.08821 1.21991 0.95355 0.89716 1.09815 1.16900 0.81751 0.86404 0.76601 1.90799 1.86857 1.12914 1.50475 1.45898 1.05288 1.11042 1.73958 1.21481 0.81614 0.93780 1.02287 1.22670 0.93251 0.98715 0.99967 0.89030 1.23440 0.94444 0.99920 1.00574 1.21508 0.88142 0.95215 0.89131 0.89885 1.42763 1.40891 1.07516 1.46576 1.19135 1.08954 0.93591 1.15964 0.89160 1.24699 0.98138 0.97401 0.98988 1.69707 1.23752 1.34579 1.30106 0.86548 0.77613 0.86818 0.77566 1.21032 1.20237 1.21740 1.23942 1.00605 1.00956 0.94655 1.73551 1.01612 1.15074 1.19148 1.43316 1.02951 1.09595 1.53731 0.71104 0.90219 0.91040 0.89413 0.81975 0.75806 0.91080 0.91433 0.90281 0.91568 0.80444 0.93063 0.92265 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.44 36.01 0.38 0.11 16 2 C 0.01 0.08 7.23 -82.20 -0.59 -0.52 16 3 C -0.18 -1.81 10.73 -39.37 -0.42 -2.23 16 4 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 5 C 0.60 8.54 7.83 -12.39 -0.10 8.44 16 6 O -0.54 -9.21 16.93 5.30 0.09 -9.12 16 7 N -0.71 -8.99 5.55 -61.30 -0.34 -9.33 16 8 C 0.13 1.74 5.52 -4.05 -0.02 1.71 16 9 C -0.13 -1.67 3.75 -89.72 -0.34 -2.01 16 10 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.14 -2.17 7.39 -25.92 -0.19 -2.36 16 12 C 0.17 3.21 4.47 -67.13 -0.30 2.92 16 13 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 14 N -0.74 -17.49 5.21 -52.65 -0.27 -17.76 16 15 C -0.25 -6.98 10.45 -15.06 -0.16 -7.14 16 16 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 17 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 18 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 19 Si 0.88 22.37 27.74 -169.99 -4.71 17.65 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 C -0.16 -2.62 7.45 -25.83 -0.19 -2.81 16 24 N -0.26 -2.71 11.92 33.42 0.40 -2.31 16 25 N -0.38 -2.72 6.83 33.50 0.23 -2.49 16 26 H 0.44 1.49 8.96 -190.44 -1.71 -0.22 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.16 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.41 4.54 8.20 -40.82 -0.33 4.20 16 32 H 0.07 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.36 8.48 5.77 -40.82 -0.24 8.25 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -35.34 333.05 -8.35 -43.69 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.91 Total: 7.98 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.62 Total: -4.57 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.79 Total: -60.65 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.34 -8.35 -43.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086034424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.795 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds