Wall clock time and date at job start Mon Mar 30 2020 23:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35362 * 126.38999 * 2 1 4 4 C 1.41501 * 105.50349 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.51323 * 179.97438 * 4 3 2 6 6 O 1.21571 * 120.00397 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46490 * 120.00264 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47452 * 179.97438 * 8 7 5 10 10 H 1.08999 * 112.84491 * 43.80405 * 9 8 7 11 11 C 1.53778 * 113.61688 * 174.99728 * 9 8 7 12 12 C 1.53777 * 87.08190 * 140.06642 * 11 9 8 13 13 H 1.09001 * 113.61257 * 89.19828 * 12 11 9 14 14 N 1.46496 * 113.61861 * 220.01737 * 12 11 9 15 15 C 1.36934 * 120.00548 * 203.46995 * 14 12 11 16 16 H 1.08004 * 119.99288 * 0.02562 * 15 14 12 17 17 C 1.38805 * 120.00389 * 180.02562 * 15 14 12 18 18 N 1.31624 * 120.00257 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00277 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00228 * 19 17 15 22 22 H 1.48499 * 109.46981 * 150.00382 * 19 17 15 23 23 C 1.53775 * 87.17460 * 334.61245 * 12 11 9 24 24 N 1.31800 * 106.96492 * 0.24062 * 4 3 2 25 25 N 1.28469 * 110.07672 * 359.59361 * 24 4 3 26 26 H 0.97001 * 124.88954 * 180.13076 * 25 24 4 27 27 H 1.08997 * 109.47025 * 89.99784 * 1 2 3 28 28 H 1.08999 * 109.46969 * 209.99968 * 1 2 3 29 29 H 1.08999 * 109.47010 * 330.00086 * 1 2 3 30 30 H 1.08004 * 127.24499 * 359.97438 * 3 2 1 31 31 H 0.97000 * 119.99166 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47110 * 59.99725 * 8 7 5 33 33 H 1.09004 * 109.47357 * 300.00154 * 8 7 5 34 34 H 1.09002 * 113.61543 * 25.51826 * 11 9 8 35 35 H 1.09002 * 113.69195 * 254.62894 * 11 9 8 36 36 H 0.96999 * 119.99694 * 23.47519 * 14 12 11 37 37 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 38 38 H 1.09000 * 113.62135 * 139.93227 * 23 12 11 39 39 H 1.08998 * 113.61872 * 270.84084 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5852 0.0006 5 6 4.8765 1.3810 0.0003 6 8 4.8214 2.5955 -0.0010 7 7 6.0731 0.7607 0.0005 8 6 7.3073 1.5499 -0.0004 9 6 8.5141 0.6094 0.0006 10 1 8.4023 -0.2233 -0.6938 11 6 9.8628 1.3377 -0.1231 12 6 10.4092 0.3356 0.9075 13 1 10.8168 -0.5713 0.4609 14 7 11.3101 0.9391 1.8925 15 6 12.2287 0.1624 2.5467 16 1 12.2892 -0.8952 2.3361 17 6 13.0819 0.7341 3.4804 18 7 13.9652 -0.0124 4.1088 19 14 12.9775 2.5634 3.8441 20 1 13.8851 3.3024 2.9300 21 1 11.5825 3.0299 3.6401 22 1 13.3820 2.8122 5.2511 23 6 8.9639 0.1795 1.4088 24 7 3.5420 -0.7297 -0.0044 25 7 2.3080 -1.0872 0.0006 26 1 1.9965 -2.0058 0.0002 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 2.0058 2.1259 -0.0004 31 1 6.1170 -0.2083 0.0011 32 1 7.3368 2.1792 0.8891 33 1 7.3364 2.1780 -0.8908 34 1 9.8386 2.3659 0.2381 35 1 10.3217 1.2456 -1.1075 36 1 11.2558 1.8890 2.0814 37 1 14.5616 0.3872 4.7611 38 1 8.6968 -0.8473 1.6588 39 1 8.6932 0.8903 2.1895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086034424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:27 Heat of formation + Delta-G solvation = 37.086679 kcal Electronic energy + Delta-G solvation = -20464.191418 eV Core-core repulsion = 17215.048116 eV Total energy + Delta-G solvation = -3249.143302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -43.68242 -40.74804 -39.73199 -36.15119 -35.06844 -33.67403 -32.98037 -32.63825 -29.12084 -27.83382 -26.47697 -25.88940 -24.55677 -22.38197 -22.21004 -21.35478 -20.55910 -19.34549 -18.65279 -18.00290 -17.13653 -16.97705 -16.62371 -16.24691 -15.93995 -15.72124 -14.93496 -14.79911 -14.68804 -14.44089 -14.04467 -13.93848 -13.69641 -13.25113 -13.18090 -13.09483 -13.04871 -12.70249 -12.13938 -11.92512 -11.90387 -11.74573 -11.63594 -11.26419 -11.06141 -10.86648 -10.51889 -10.06142 -9.93091 -9.26428 -8.02588 -5.34911 0.47553 1.10609 1.38116 1.40643 1.47828 1.85807 2.24327 2.32657 2.48253 3.27529 3.36603 3.59081 3.70440 3.78267 3.85510 4.07037 4.10325 4.27443 4.37328 4.47616 4.56084 4.60038 4.76692 4.80691 4.95451 4.97191 5.02627 5.03443 5.12152 5.20687 5.30544 5.35330 5.41375 5.65280 5.78424 6.09784 6.23433 6.43804 6.85203 7.08329 7.12553 7.86638 8.04652 9.18989 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.002764 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.418513 B =10128.708995 C =10253.534133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.037 4.037 5 C 0.596 3.404 6 O -0.574 6.574 7 N -0.703 5.703 8 C 0.136 3.864 9 C -0.099 4.099 10 H 0.117 0.883 11 C -0.132 4.132 12 C 0.146 3.854 13 H 0.078 0.922 14 N -0.744 5.744 15 C -0.231 4.231 16 H 0.059 0.941 17 C -0.068 4.068 18 N -0.985 5.985 19 Si 0.954 3.046 20 H -0.277 1.277 21 H -0.254 1.254 22 H -0.297 1.297 23 C -0.157 4.157 24 N -0.269 5.269 25 N -0.365 5.365 26 H 0.462 0.538 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.415 0.585 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.365 0.635 37 H 0.257 0.743 38 H 0.062 0.938 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.706 -1.558 -12.586 33.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 C -0.236 4.236 4 C -0.196 4.196 5 C 0.382 3.618 6 O -0.452 6.452 7 N -0.354 5.354 8 C 0.013 3.987 9 C -0.118 4.118 10 H 0.135 0.865 11 C -0.171 4.171 12 C 0.038 3.962 13 H 0.096 0.904 14 N -0.385 5.385 15 C -0.362 4.362 16 H 0.077 0.923 17 C -0.259 4.259 18 N -0.635 5.635 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.179 1.179 22 H -0.224 1.224 23 C -0.197 4.197 24 N -0.106 5.106 25 N -0.083 5.083 26 H 0.310 0.690 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.179 0.821 31 H 0.252 0.748 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -29.897 -1.810 -12.531 32.467 hybrid contribution 0.097 0.735 0.778 1.075 sum -29.800 -1.074 -11.752 32.052 Atomic orbital electron populations 1.20545 0.83236 1.05556 1.04845 1.21971 0.97064 0.85958 1.04337 1.21742 0.90328 1.00898 1.10622 1.21816 0.95173 0.90457 1.12188 1.17222 0.82648 0.86168 0.75781 1.90764 1.87498 1.14540 1.52427 1.45820 1.04830 1.11394 1.73333 1.21364 0.81773 0.93676 1.01924 1.22502 0.92364 0.98885 0.98016 0.86509 1.23327 0.94769 0.98977 1.00067 1.21918 0.88290 0.96349 0.89683 0.90413 1.42792 1.40979 1.07355 1.47395 1.19127 1.09040 0.92721 1.15286 0.92316 1.25519 0.98378 1.02421 0.99554 1.69886 1.25353 1.36793 1.31503 0.85415 0.78719 0.80862 0.76823 1.20307 1.17913 1.22409 1.23787 0.98667 1.01003 0.96273 1.73467 1.03286 1.14253 1.19640 1.43436 1.02112 1.10730 1.51983 0.68978 0.88676 0.88758 0.88773 0.82081 0.74826 0.92578 0.90784 0.90212 0.89644 0.80138 0.93418 0.91931 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 10.44 71.24 0.74 0.51 16 2 C 0.03 0.39 7.23 41.40 0.30 0.69 16 3 C -0.21 -4.04 10.73 22.41 0.24 -3.80 16 4 C -0.04 -0.87 7.13 42.46 0.30 -0.57 16 5 C 0.60 16.85 7.83 86.75 0.68 17.53 16 6 O -0.57 -19.99 16.93 -3.94 -0.07 -20.06 16 7 N -0.70 -16.97 5.55 -466.11 -2.59 -19.56 16 8 C 0.14 3.37 5.52 86.38 0.48 3.85 16 9 C -0.10 -2.36 3.75 -10.21 -0.04 -2.40 16 10 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 11 C -0.13 -3.66 7.39 31.12 0.23 -3.43 16 12 C 0.15 5.34 4.47 45.52 0.20 5.55 16 13 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 14 N -0.74 -34.89 5.21 -320.48 -1.67 -36.56 16 15 C -0.23 -13.27 10.45 84.03 0.88 -12.39 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 17 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 18 N -0.98 -64.01 13.97 21.65 0.30 -63.71 16 19 Si 0.95 46.50 27.74 68.60 1.90 48.41 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.25 -11.31 6.52 99.48 0.65 -10.67 16 22 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 23 C -0.16 -4.91 7.45 31.18 0.23 -4.68 16 24 N -0.27 -5.26 11.92 -48.18 -0.57 -5.83 16 25 N -0.36 -4.33 6.83 -47.93 -0.33 -4.65 16 26 H 0.46 1.70 8.96 -219.99 -1.97 -0.27 16 27 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.42 8.58 8.20 -92.71 -0.76 7.82 16 32 H 0.06 1.59 7.86 -2.39 -0.02 1.57 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.24 8.07 -2.39 -0.02 2.23 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.37 16.57 5.77 -92.71 -0.53 16.03 16 37 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 2.22 7.91 -2.39 -0.02 2.20 16 Total: -1.00 -78.82 333.05 -0.54 -79.36 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -2.23 Total: 25.32 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.71 Total: -2.73 kcal Atomic # 7 Polarization: -125.45 SS G_CDS: -4.86 Total: -130.31 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.07 Total: -20.06 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.90 Total: 48.41 kcal Total: -78.82 -0.54 -79.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086034424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.446 kcal (2) G-P(sol) polarization free energy of solvation -78.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds