Wall clock time and date at job start Tue Mar 31 2020 00:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30448 * 125.99196 * 2 1 4 4 N 1.39931 * 108.89964 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.75255 * 179.97438 * 4 3 2 6 6 C 1.34254 * 108.49155 * 359.75152 * 4 3 2 7 7 C 1.38038 * 107.41955 * 0.39552 * 6 4 3 8 8 C 1.47433 * 126.41804 * 179.87069 * 7 6 4 9 9 O 1.21598 * 120.00022 * 179.68284 * 8 7 6 10 10 N 1.34771 * 119.99504 * 359.68944 * 8 7 6 11 11 C 1.46505 * 119.99622 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.85138 * 43.80167 * 12 11 10 14 14 C 1.53781 * 113.61559 * 174.99892 * 12 11 10 15 15 C 1.53782 * 87.08224 * 139.98357 * 14 12 11 16 16 H 1.09001 * 113.62071 * 89.11329 * 15 14 12 17 17 N 1.46503 * 113.61478 * 219.93697 * 15 14 12 18 18 C 1.36935 * 119.99930 * 204.99685 * 17 15 14 19 19 H 1.07999 * 120.00223 * 359.97438 * 18 17 15 20 20 C 1.38810 * 119.99868 * 180.02562 * 18 17 15 21 21 N 1.31617 * 120.00200 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00039 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47471 * 89.99886 * 22 20 18 24 24 H 1.48506 * 109.47364 * 209.99727 * 22 20 18 25 25 H 1.48501 * 109.47133 * 329.99644 * 22 20 18 26 26 C 1.53782 * 87.08134 * 334.56746 * 15 14 12 27 27 H 1.09000 * 109.46983 * 269.99715 * 1 2 3 28 28 H 1.08998 * 109.47336 * 29.99689 * 1 2 3 29 29 H 1.08995 * 109.47014 * 149.99958 * 1 2 3 30 30 H 1.08003 * 126.28898 * 180.24265 * 6 4 3 31 31 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 33 33 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 34 34 H 1.09003 * 113.61181 * 254.52982 * 14 12 11 35 35 H 1.08994 * 113.61519 * 25.43167 * 14 12 11 36 36 H 0.96999 * 119.99912 * 24.99646 * 17 15 14 37 37 H 0.97002 * 120.00436 * 180.02562 * 21 20 18 38 38 H 1.08998 * 113.61542 * 270.88622 * 26 15 14 39 39 H 1.08998 * 113.61766 * 139.98331 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0011 6 6 3.6439 -0.6979 0.0046 7 6 2.3373 -1.1433 -0.0007 8 6 1.8916 -2.5486 -0.0005 9 8 0.7040 -2.8097 0.0004 10 7 2.8004 -3.5437 -0.0011 11 6 2.3575 -4.9402 -0.0015 12 6 3.5783 -5.8624 -0.0028 13 1 4.3536 -5.5395 0.6921 14 6 3.2238 -7.3538 0.1195 15 6 4.3321 -7.6212 -0.9125 16 1 5.3145 -7.7793 -0.4674 17 7 3.9818 -8.6478 -1.8972 18 6 4.9692 -9.3549 -2.5299 19 1 6.0061 -9.1555 -2.3033 20 6 4.6372 -10.3273 -3.4633 21 7 3.3735 -10.5699 -3.7398 22 14 5.9840 -11.2924 -4.3258 23 1 6.3023 -12.5104 -3.5382 24 1 5.5208 -11.6861 -5.6807 25 1 7.1998 -10.4479 -4.4444 26 6 4.1059 -6.1841 -1.4111 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 4.5298 -1.3157 0.0092 31 1 3.7478 -3.3354 -0.0021 32 1 1.7582 -5.1315 0.8887 33 1 1.7576 -5.1309 -0.8913 34 1 3.4333 -7.7731 1.1037 35 1 2.2241 -7.5960 -0.2407 36 1 3.0505 -8.8266 -2.1010 37 1 3.1415 -11.2497 -4.3918 38 1 3.3472 -6.1064 -2.1898 39 1 5.0273 -5.6590 -1.6627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086163080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:59 Heat of formation + Delta-G solvation = 32.538628 kcal Electronic energy + Delta-G solvation = -20600.487912 eV Core-core repulsion = 17351.147391 eV Total energy + Delta-G solvation = -3249.340521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.38799 -40.49000 -39.50180 -36.00998 -34.99884 -33.91055 -32.32579 -31.41532 -29.08072 -28.27392 -26.40434 -25.82522 -24.02968 -22.45977 -21.50814 -20.86105 -20.34728 -19.38729 -18.95737 -17.43785 -17.02922 -16.55304 -16.42736 -16.07816 -15.55158 -15.43498 -15.26072 -14.95338 -14.57353 -14.24242 -13.89179 -13.73026 -13.37263 -13.18545 -12.99559 -12.97279 -12.85779 -12.62691 -12.16529 -12.04704 -11.98050 -11.53738 -11.51074 -11.05474 -10.83065 -10.73104 -10.52098 -10.11932 -9.70014 -8.94809 -7.92405 -5.20519 0.56656 1.09227 1.48637 1.50357 1.58604 1.82403 2.33689 2.48677 2.58699 3.39769 3.50628 3.77138 3.78529 3.82491 3.96009 4.22723 4.30878 4.32446 4.41698 4.48047 4.52154 4.63377 4.76141 4.84937 4.92292 4.99660 5.03218 5.05088 5.12306 5.28197 5.42562 5.46325 5.51229 5.58407 5.79600 6.28064 6.30121 6.49374 6.74280 7.35378 7.38593 8.14813 8.35876 9.31321 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.002758 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.169139 B =10148.266369 C =10392.797369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.116 3.884 3 N -0.328 5.328 4 N -0.447 5.447 5 H 0.461 0.539 6 C 0.139 3.861 7 C -0.322 4.322 8 C 0.587 3.413 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.140 3.860 12 C -0.093 4.093 13 H 0.126 0.874 14 C -0.139 4.139 15 C 0.142 3.858 16 H 0.082 0.918 17 N -0.732 5.732 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.973 3.027 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.267 1.267 26 C -0.153 4.153 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.236 0.764 31 H 0.414 0.586 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.053 0.947 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 22.988 11.370 25.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.152 5.152 4 N -0.153 5.153 5 H 0.310 0.690 6 C -0.015 4.015 7 C -0.337 4.337 8 C 0.376 3.624 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.016 3.984 12 C -0.112 4.112 13 H 0.144 0.856 14 C -0.178 4.178 15 C 0.032 3.968 16 H 0.100 0.900 17 N -0.369 5.369 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.802 3.198 23 H -0.215 1.215 24 H -0.226 1.226 25 H -0.191 1.191 26 C -0.193 4.193 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.252 0.748 31 H 0.251 0.749 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.203 0.797 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.441 24.001 11.312 26.756 hybrid contribution 0.681 -1.444 -0.910 1.838 sum 4.122 22.557 10.402 25.180 Atomic orbital electron populations 1.20310 0.85776 1.03736 1.03781 1.22706 0.97965 0.89348 0.95104 1.77117 0.87776 1.22676 1.27630 1.46148 1.07418 1.06085 1.55631 0.69015 1.23797 0.99075 0.85689 0.92964 1.20310 0.93860 0.93439 1.26088 1.17559 0.85251 0.84508 0.75047 1.90726 1.18303 1.84998 1.52890 1.45644 1.10118 1.05280 1.75081 1.21194 0.96449 0.79670 1.01039 1.22467 0.97190 0.93454 0.98042 0.85632 1.23342 0.99237 0.95345 0.99925 1.21988 0.97257 0.87641 0.89872 0.89988 1.42663 1.05537 1.42100 1.46579 1.19742 0.89563 1.12322 1.15551 0.90173 1.25599 0.98198 1.01693 1.01834 1.69826 1.17279 1.36941 1.38396 0.85146 0.78748 0.78751 0.77172 1.21477 1.22616 1.19128 1.23718 1.00598 0.99086 0.95936 0.89733 0.89948 0.90331 0.74789 0.74907 0.91751 0.93767 0.90325 0.91711 0.79725 0.94161 0.92849 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 9.92 71.24 0.71 -0.91 16 2 C 0.12 2.57 7.26 43.52 0.32 2.89 16 3 N -0.33 -6.53 12.63 -46.67 -0.59 -7.12 16 4 N -0.45 -4.86 7.29 -56.32 -0.41 -5.27 16 5 H 0.46 1.36 8.96 -213.43 -1.91 -0.55 16 6 C 0.14 1.40 11.52 84.28 0.97 2.37 16 7 C -0.32 -6.38 6.13 -20.15 -0.12 -6.51 16 8 C 0.59 14.53 7.81 86.67 0.68 15.21 16 9 O -0.59 -19.60 14.92 -4.02 -0.06 -19.66 16 10 N -0.71 -13.62 5.54 -466.37 -2.59 -16.20 16 11 C 0.14 3.34 5.51 86.38 0.48 3.82 16 12 C -0.09 -2.07 3.75 -10.27 -0.04 -2.10 16 13 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 14 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 15 C 0.14 5.15 4.48 45.52 0.20 5.35 16 16 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 17 N -0.73 -36.35 5.40 -320.44 -1.73 -38.09 16 18 C -0.24 -13.10 9.97 84.03 0.84 -12.26 16 19 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 21 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 22 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C -0.15 -4.56 7.43 31.12 0.23 -4.33 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.94 6.55 -2.39 -0.02 1.92 16 30 H 0.24 -0.18 7.46 -2.91 -0.02 -0.20 16 31 H 0.41 4.62 7.40 -92.71 -0.69 3.94 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.31 7.84 -2.39 -0.02 1.29 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 36 H 0.37 20.20 7.92 -92.71 -0.73 19.47 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.05 1.89 7.89 -2.39 -0.02 1.87 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -78.35 331.60 -0.35 -78.70 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -2.24 Total: 24.21 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.95 Total: -4.53 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.03 Total: -126.55 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.66 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -78.35 -0.35 -78.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086163080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.239 kcal (2) G-P(sol) polarization free energy of solvation -78.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds