Wall clock time and date at job start Mon Mar 30 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 6 6 C 1.46763 * 126.84575 * 179.80041 * 5 4 3 7 7 O 1.21680 * 120.00308 * 359.95735 * 6 5 4 8 8 N 1.34778 * 120.00191 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00164 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46974 * 180.02562 * 9 8 6 11 11 H 1.09001 * 112.85027 * 43.80579 * 10 9 8 12 12 C 1.53780 * 113.61060 * 175.00123 * 10 9 8 13 13 C 1.53777 * 87.08016 * 139.98047 * 12 10 9 14 14 H 1.09005 * 113.61380 * 220.01574 * 13 12 10 15 15 N 1.46507 * 113.61738 * 89.19758 * 13 12 10 16 16 C 1.36940 * 119.99983 * 154.99956 * 15 13 12 17 17 H 1.08000 * 119.99711 * 0.02562 * 16 15 13 18 18 C 1.38807 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00388 * 180.02562 * 18 16 15 20 20 Si 1.86813 * 120.00016 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47144 * 89.99930 * 20 18 16 22 22 H 1.48501 * 109.46888 * 210.00116 * 20 18 16 23 23 H 1.48503 * 109.46828 * 329.99924 * 20 18 16 24 24 C 1.53777 * 87.08349 * 334.56407 * 13 12 10 25 25 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 26 26 H 0.97004 * 126.47269 * 359.95323 * 25 2 1 27 27 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 30 30 H 1.08005 * 126.10578 * 180.18190 * 4 3 2 31 31 H 0.97008 * 119.99914 * 359.97438 * 8 6 5 32 32 H 1.08997 * 109.46822 * 299.99896 * 9 8 6 33 33 H 1.08999 * 109.47185 * 59.99959 * 9 8 6 34 34 H 1.08999 * 113.61135 * 254.52582 * 12 10 9 35 35 H 1.09001 * 113.61842 * 25.42935 * 12 10 9 36 36 H 0.96999 * 119.99606 * 334.99839 * 15 13 12 37 37 H 0.96992 * 120.00707 * 180.02562 * 19 18 16 38 38 H 1.08997 * 113.61723 * 270.89091 * 24 13 12 39 39 H 1.08997 * 113.61589 * 139.97722 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 3.5976 -0.6608 -0.0041 6 6 4.8028 -1.4982 -0.0081 7 8 5.9038 -0.9800 -0.0059 8 7 4.6903 -2.8413 -0.0145 9 6 5.8934 -3.6772 -0.0190 10 6 5.4891 -5.1529 -0.0266 11 1 4.6780 -5.3659 -0.7229 12 6 6.6801 -6.1172 -0.1546 13 6 5.9653 -7.0114 0.8721 14 1 6.6377 -7.4607 1.6030 15 7 5.0506 -7.9834 0.2677 16 6 4.7447 -9.1409 0.9324 17 1 5.1774 -9.3371 1.9022 18 6 3.8785 -10.0619 0.3595 19 7 3.5841 -11.1743 0.9985 20 14 3.1307 -9.7227 -1.3184 21 1 4.0172 -10.2719 -2.3756 22 1 1.7968 -10.3695 -1.4057 23 1 2.9836 -8.2572 -1.5076 24 6 5.2674 -5.7380 1.3782 25 7 2.2865 -1.0961 -0.0060 26 1 1.9850 -2.0180 -0.0103 27 1 -0.3633 -0.0055 1.0277 28 1 -0.3633 -0.8872 -0.5186 29 1 -0.3633 0.8928 -0.5091 30 1 4.3978 1.3722 0.0064 31 1 3.8126 -3.2545 -0.0161 32 1 6.4845 -3.4582 -0.9082 33 1 6.4854 -3.4668 0.8717 34 1 6.7702 -6.5712 -1.1414 35 1 7.6199 -5.7010 0.2083 36 1 4.6617 -7.8068 -0.6032 37 1 2.9791 -11.8181 0.5981 38 1 5.8210 -5.2181 2.1600 39 1 4.2170 -5.8860 1.6287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086325861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:22 Heat of formation + Delta-G solvation = 48.683044 kcal Electronic energy + Delta-G solvation = -20759.829685 eV Core-core repulsion = 17511.189239 eV Total energy + Delta-G solvation = -3248.640446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54275 -39.73867 -38.62961 -34.98918 -33.47792 -32.91094 -32.23927 -30.76030 -28.49105 -27.08462 -25.28610 -23.84192 -22.87744 -21.90420 -21.16514 -20.63965 -19.19843 -18.37323 -17.74218 -16.34829 -16.17909 -16.08585 -15.30395 -14.97111 -14.52061 -14.35028 -14.23956 -13.74617 -13.63904 -13.60279 -13.08234 -12.87487 -12.85628 -12.59867 -12.15612 -11.69540 -11.46902 -11.00634 -10.76391 -10.61946 -10.53213 -10.44276 -10.27908 -10.05667 -9.76517 -9.63851 -9.31348 -9.00964 -8.78054 -7.40062 -5.88276 -3.25047 0.98611 2.47178 2.48993 2.92063 3.11271 3.24622 3.29123 3.35145 3.97228 4.44681 4.46948 4.63590 4.80558 4.81537 4.92112 4.97331 5.03796 5.19143 5.29943 5.32625 5.38150 5.42711 5.47923 5.65174 5.74213 5.80231 6.02688 6.10727 6.14263 6.23135 6.37931 6.50411 6.62136 6.78390 6.79984 7.18358 7.58043 7.89293 7.90310 8.31310 9.08656 9.80720 9.99714 11.29812 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019595 B = 0.003545 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.608264 B = 7896.361164 C = 8910.349460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.239 3.761 3 N -0.497 5.497 4 C 0.071 3.929 5 C -0.090 4.090 6 C 0.593 3.407 7 O -0.528 6.528 8 N -0.724 5.724 9 C 0.131 3.869 10 C -0.125 4.125 11 H 0.089 0.911 12 C -0.148 4.148 13 C 0.173 3.827 14 H 0.072 0.928 15 N -0.730 5.730 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.279 1.279 24 C -0.167 4.167 25 N -0.552 5.552 26 H 0.422 0.578 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 20.636 -2.999 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 N -0.217 5.217 4 C -0.083 4.083 5 C -0.206 4.206 6 C 0.379 3.621 7 O -0.404 6.404 8 N -0.374 5.374 9 C 0.009 3.991 10 C -0.144 4.144 11 H 0.107 0.893 12 C -0.187 4.187 13 C 0.061 3.939 14 H 0.090 0.910 15 N -0.370 5.370 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.190 4.190 19 N -0.578 5.578 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.208 4.208 25 N -0.157 5.157 26 H 0.261 0.739 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.202 0.798 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.050 21.555 -2.834 21.953 hybrid contribution -0.952 -1.367 -1.228 2.069 sum -4.002 20.188 -4.062 20.978 Atomic orbital electron populations 1.20334 0.84130 1.04679 1.04227 1.23506 0.95960 0.81515 1.01517 1.70215 1.02136 1.28203 1.21143 1.22670 0.94766 0.91241 0.99608 1.21211 0.83711 0.96103 1.19567 1.16858 0.86968 0.81574 0.76718 1.90853 1.25845 1.73279 1.50468 1.45973 1.10603 1.05608 1.75229 1.21543 0.86202 0.89060 1.02328 1.22774 1.00093 0.91556 0.99945 0.89318 1.23462 0.96690 0.97222 1.01368 1.21001 0.91202 0.87894 0.93814 0.90957 1.42519 1.53593 1.20215 1.20672 1.19116 1.22860 0.93555 1.02299 0.88983 1.24685 0.99752 0.96438 0.98092 1.69689 1.39478 1.10124 1.38510 0.86564 0.79093 0.77267 0.85585 1.20931 1.21633 1.20575 1.23873 1.02264 1.00204 0.94472 1.43283 1.06122 1.10357 1.55973 0.73884 0.89433 0.90266 0.88591 0.79849 0.77143 0.91371 0.90959 0.91341 0.89830 0.80561 0.92910 0.90812 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.24 2.10 8.12 -155.61 -1.26 0.84 16 3 N -0.50 -5.74 11.20 -10.58 -0.12 -5.85 16 4 C 0.07 0.83 11.66 -17.48 -0.20 0.62 16 5 C -0.09 -1.00 7.07 -82.15 -0.58 -1.58 16 6 C 0.59 7.47 7.79 -12.81 -0.10 7.37 16 7 O -0.53 -8.38 16.90 5.21 0.09 -8.29 16 8 N -0.72 -7.83 5.55 -61.59 -0.34 -8.17 16 9 C 0.13 1.54 5.51 -4.04 -0.02 1.52 16 10 C -0.12 -1.61 3.63 -89.80 -0.33 -1.93 16 11 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.15 -2.07 7.39 -25.92 -0.19 -2.26 16 13 C 0.17 3.05 4.56 -67.12 -0.31 2.75 16 14 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 15 N -0.73 -16.23 5.12 -52.63 -0.27 -16.50 16 16 C -0.25 -6.73 10.45 -15.06 -0.16 -6.89 16 17 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 18 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 19 N -0.93 -28.42 13.97 55.49 0.78 -27.65 16 20 Si 0.88 21.14 27.74 -169.99 -4.71 16.43 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 24 C -0.17 -2.47 7.43 -25.92 -0.19 -2.66 16 25 N -0.55 -4.53 6.07 -7.02 -0.04 -4.57 16 26 H 0.42 2.24 8.32 -40.82 -0.34 1.91 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.40 3.45 7.72 -40.82 -0.31 3.13 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.36 7.85 5.76 -40.82 -0.24 7.62 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -34.00 332.07 -8.20 -42.21 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.52 Total: 9.51 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.06 Total: -2.12 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.00 Total: -62.74 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.00 -8.20 -42.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086325861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.890 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds