Wall clock time and date at job start Tue Mar 31 2020 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30452 * 125.98999 * 2 1 4 4 N 1.39933 * 108.89662 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.74834 * 179.97438 * 4 3 2 6 6 C 1.34262 * 108.49150 * 359.75343 * 4 3 2 7 7 C 1.38047 * 107.41637 * 0.39340 * 6 4 3 8 8 C 1.47429 * 126.40954 * 179.87030 * 7 6 4 9 9 O 1.21599 * 119.99406 * 179.68988 * 8 7 6 10 10 N 1.34771 * 120.00286 * 359.68873 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47176 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.85249 * 43.79586 * 12 11 10 14 14 C 1.53782 * 113.61236 * 175.00186 * 12 11 10 15 15 C 1.53786 * 87.07909 * 139.97781 * 14 12 11 16 16 H 1.09002 * 113.61357 * 220.01470 * 15 14 12 17 17 N 1.46497 * 113.61643 * 89.19525 * 15 14 12 18 18 C 1.36934 * 120.00217 * 156.52439 * 17 15 14 19 19 H 1.08002 * 120.00035 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00227 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99833 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99963 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46931 * 89.99845 * 22 20 18 24 24 H 1.48501 * 109.46828 * 209.99524 * 22 20 18 25 25 H 1.48501 * 109.46979 * 329.99742 * 22 20 18 26 26 C 1.53781 * 87.17350 * 334.60554 * 15 14 12 27 27 H 1.09003 * 109.46821 * 269.99279 * 1 2 3 28 28 H 1.09000 * 109.46990 * 29.99177 * 1 2 3 29 29 H 1.09001 * 109.47461 * 149.99430 * 1 2 3 30 30 H 1.07999 * 126.28690 * 180.24596 * 6 4 3 31 31 H 0.97002 * 120.00005 * 0.02562 * 10 8 7 32 32 H 1.08993 * 109.47256 * 60.00118 * 11 10 8 33 33 H 1.09007 * 109.47285 * 299.99706 * 11 10 8 34 34 H 1.08993 * 113.61979 * 25.42879 * 14 12 11 35 35 H 1.09000 * 113.68722 * 254.53547 * 14 12 11 36 36 H 0.97006 * 120.00058 * 336.53149 * 17 15 14 37 37 H 0.97005 * 119.99894 * 180.02562 * 21 20 18 38 38 H 1.09001 * 113.61695 * 139.93969 * 26 15 14 39 39 H 1.08997 * 113.61223 * 270.84552 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0011 6 6 3.6439 -0.6980 0.0045 7 6 2.3372 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0005 9 8 0.7039 -2.8097 0.0002 10 7 2.8004 -3.5437 -0.0012 11 6 2.3575 -4.9402 -0.0016 12 6 3.5783 -5.8625 -0.0018 13 1 4.3530 -5.5393 0.6935 14 6 3.2237 -7.3538 0.1205 15 6 4.3327 -7.6213 -0.9107 16 1 4.0721 -8.3843 -1.6442 17 7 5.6522 -7.8357 -0.3112 18 6 6.6094 -8.5363 -0.9953 19 1 6.3918 -8.9306 -1.9770 20 6 7.8598 -8.7390 -0.4276 21 7 8.7799 -9.4120 -1.0854 22 14 8.2364 -8.0565 1.2700 23 1 7.8801 -9.0657 2.2995 24 1 9.6843 -7.7409 1.3665 25 1 7.4443 -6.8204 1.4935 26 6 4.1094 -6.1843 -1.4106 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 4.5298 -1.3157 0.0092 31 1 3.7478 -3.3354 -0.0015 32 1 1.7576 -5.1308 -0.8914 33 1 1.7581 -5.1316 0.8885 34 1 2.2242 -7.5960 -0.2404 35 1 3.4317 -7.7741 1.1045 36 1 5.8477 -7.4814 0.5704 37 1 9.6536 -9.5539 -0.6885 38 1 5.0321 -5.6606 -1.6606 39 1 3.3524 -6.1062 -2.1909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086442946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:03 Heat of formation + Delta-G solvation = 63.694977 kcal Electronic energy + Delta-G solvation = -20834.033057 eV Core-core repulsion = 17586.043577 eV Total energy + Delta-G solvation = -3247.989480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.68695 -39.49036 -38.45127 -34.78278 -33.35528 -33.13281 -31.10106 -30.41928 -28.30934 -27.32708 -25.20681 -23.82598 -23.00409 -21.79718 -20.66618 -19.97034 -18.95525 -18.33287 -17.67181 -16.57523 -15.89354 -15.67027 -15.07816 -14.75839 -14.58699 -14.38559 -14.01760 -13.55820 -13.39929 -13.16369 -13.02690 -12.80338 -12.53659 -12.25267 -12.06442 -11.58724 -11.38602 -11.23545 -10.95569 -10.53507 -10.30987 -10.18549 -9.87659 -9.80919 -9.69150 -9.55353 -9.23246 -8.97126 -8.89453 -7.34727 -5.84192 -3.20435 1.19864 1.90299 2.36632 3.22013 3.29102 3.33070 3.34597 3.38823 4.21210 4.32160 4.51227 4.83322 4.88562 4.93500 4.99343 5.12961 5.17551 5.35860 5.41843 5.49505 5.50058 5.61685 5.73270 5.76951 5.86844 5.92282 6.10908 6.20780 6.22659 6.36709 6.47906 6.59135 6.71824 6.74652 6.86532 7.19565 7.52491 7.94028 8.23956 8.35589 9.13390 9.85538 10.04831 11.33974 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.003392 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.558827 B = 8253.932217 C = 8983.679869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.303 5.303 4 N -0.461 5.461 5 H 0.444 0.556 6 C 0.107 3.893 7 C -0.288 4.288 8 C 0.591 3.409 9 O -0.545 6.545 10 N -0.724 5.724 11 C 0.133 3.867 12 C -0.123 4.123 13 H 0.089 0.911 14 C -0.148 4.148 15 C 0.172 3.828 16 H 0.070 0.930 17 N -0.730 5.730 18 C -0.246 4.246 19 H 0.092 0.908 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.166 4.166 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.187 0.813 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.067 0.933 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 18.378 3.209 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 N -0.126 5.126 4 N -0.165 5.165 5 H 0.289 0.711 6 C -0.047 4.047 7 C -0.303 4.303 8 C 0.378 3.622 9 O -0.424 6.424 10 N -0.375 5.375 11 C 0.010 3.990 12 C -0.142 4.142 13 H 0.107 0.893 14 C -0.187 4.187 15 C 0.060 3.940 16 H 0.088 0.912 17 N -0.371 5.371 18 C -0.376 4.376 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.207 4.207 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.204 0.796 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.004 19.271 3.034 23.445 hybrid contribution 1.619 0.056 1.261 2.053 sum -11.385 19.327 4.295 22.838 Atomic orbital electron populations 1.20363 0.85582 1.04151 1.03638 1.22512 0.97443 0.88663 0.94726 1.77177 0.86250 1.22477 1.26678 1.46108 1.07880 1.05494 1.57064 0.71096 1.23228 0.99148 0.85730 0.96545 1.20357 0.92111 0.94771 1.23030 1.17226 0.85655 0.83468 0.75812 1.90732 1.16312 1.84315 1.50991 1.45890 1.09487 1.06457 1.75647 1.21450 0.96739 0.78821 1.01979 1.22783 0.96568 0.95056 0.99799 0.89312 1.23436 1.00045 0.94067 1.01193 1.21014 0.85053 0.94058 0.93872 0.91155 1.42517 1.10091 1.65489 1.18977 1.19115 0.91255 1.26130 1.01113 0.89020 1.24686 0.96197 1.00186 0.98015 1.69699 1.05102 1.45138 1.38001 0.86557 0.77346 0.78876 0.85731 1.20988 1.21704 1.20451 1.23882 1.00544 1.01752 0.94526 0.90150 0.91036 0.88457 0.79596 0.76886 0.91308 0.91720 0.89905 0.91445 0.80543 0.92971 0.91381 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.92 36.01 0.36 -0.42 16 2 C 0.13 1.54 7.26 -82.02 -0.60 0.94 16 3 N -0.30 -3.31 12.63 33.90 0.43 -2.88 16 4 N -0.46 -3.51 7.29 30.85 0.22 -3.29 16 5 H 0.44 1.79 8.96 -182.72 -1.64 0.15 16 6 C 0.11 0.82 11.52 -16.56 -0.19 0.63 16 7 C -0.29 -3.16 6.13 -105.07 -0.64 -3.80 16 8 C 0.59 7.52 7.81 -12.52 -0.10 7.42 16 9 O -0.55 -8.54 14.92 5.28 0.08 -8.46 16 10 N -0.72 -8.00 5.54 -61.38 -0.34 -8.34 16 11 C 0.13 1.60 5.51 -4.04 -0.02 1.58 16 12 C -0.12 -1.62 3.64 -89.71 -0.33 -1.94 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.15 -2.11 7.39 -25.92 -0.19 -2.30 16 15 C 0.17 3.08 4.55 -67.12 -0.31 2.77 16 16 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 17 N -0.73 -16.38 5.12 -52.64 -0.27 -16.65 16 18 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.14 5.50 -17.43 -0.10 0.05 16 21 N -0.93 -28.62 13.97 55.49 0.78 -27.84 16 22 Si 0.88 21.28 27.74 -169.99 -4.71 16.57 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 26 C -0.17 -2.50 7.45 -25.82 -0.19 -2.69 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.07 6.55 -51.93 -0.34 0.73 16 30 H 0.19 0.74 7.46 -52.49 -0.39 0.34 16 31 H 0.40 3.51 7.40 -40.82 -0.30 3.21 16 32 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.36 7.92 5.76 -40.82 -0.24 7.69 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.00 7.90 -51.93 -0.41 0.58 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -34.41 328.39 -8.03 -42.44 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.69 Total: 8.13 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.46 Total: -4.63 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.82 Total: -59.00 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.41 -8.03 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086442946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.134 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds