Wall clock time and date at job start Tue Mar 31 2020 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30452 * 125.98999 * 2 1 4 4 N 1.39933 * 108.89662 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.74834 * 179.97438 * 4 3 2 6 6 C 1.34262 * 108.49150 * 359.75343 * 4 3 2 7 7 C 1.38047 * 107.41637 * 0.39340 * 6 4 3 8 8 C 1.47429 * 126.40954 * 179.87030 * 7 6 4 9 9 O 1.21599 * 119.99406 * 179.68988 * 8 7 6 10 10 N 1.34771 * 120.00286 * 359.68873 * 8 7 6 11 11 C 1.46497 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.53007 * 109.47176 * 180.02562 * 11 10 8 13 13 H 1.08994 * 112.85249 * 43.79586 * 12 11 10 14 14 C 1.53782 * 113.61236 * 175.00186 * 12 11 10 15 15 C 1.53786 * 87.07909 * 139.97781 * 14 12 11 16 16 H 1.09002 * 113.61357 * 220.01470 * 15 14 12 17 17 N 1.46497 * 113.61643 * 89.19525 * 15 14 12 18 18 C 1.36934 * 120.00217 * 156.52439 * 17 15 14 19 19 H 1.08002 * 120.00035 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00227 * 179.97438 * 18 17 15 21 21 N 1.31618 * 119.99833 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99963 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46931 * 89.99845 * 22 20 18 24 24 H 1.48501 * 109.46828 * 209.99524 * 22 20 18 25 25 H 1.48501 * 109.46979 * 329.99742 * 22 20 18 26 26 C 1.53781 * 87.17350 * 334.60554 * 15 14 12 27 27 H 1.09003 * 109.46821 * 269.99279 * 1 2 3 28 28 H 1.09000 * 109.46990 * 29.99177 * 1 2 3 29 29 H 1.09001 * 109.47461 * 149.99430 * 1 2 3 30 30 H 1.07999 * 126.28690 * 180.24596 * 6 4 3 31 31 H 0.97002 * 120.00005 * 0.02562 * 10 8 7 32 32 H 1.08993 * 109.47256 * 60.00118 * 11 10 8 33 33 H 1.09007 * 109.47285 * 299.99706 * 11 10 8 34 34 H 1.08993 * 113.61979 * 25.42879 * 14 12 11 35 35 H 1.09000 * 113.68722 * 254.53547 * 14 12 11 36 36 H 0.97006 * 120.00058 * 336.53149 * 17 15 14 37 37 H 0.97005 * 119.99894 * 180.02562 * 21 20 18 38 38 H 1.09001 * 113.61695 * 139.93969 * 26 15 14 39 39 H 1.08997 * 113.61223 * 270.84552 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0011 6 6 3.6439 -0.6980 0.0045 7 6 2.3372 -1.1432 -0.0007 8 6 1.8916 -2.5486 -0.0005 9 8 0.7039 -2.8097 0.0002 10 7 2.8004 -3.5437 -0.0012 11 6 2.3575 -4.9402 -0.0016 12 6 3.5783 -5.8625 -0.0018 13 1 4.3530 -5.5393 0.6935 14 6 3.2237 -7.3538 0.1205 15 6 4.3327 -7.6213 -0.9107 16 1 4.0721 -8.3843 -1.6442 17 7 5.6522 -7.8357 -0.3112 18 6 6.6094 -8.5363 -0.9953 19 1 6.3918 -8.9306 -1.9770 20 6 7.8598 -8.7390 -0.4276 21 7 8.7799 -9.4120 -1.0854 22 14 8.2364 -8.0565 1.2700 23 1 7.8801 -9.0657 2.2995 24 1 9.6843 -7.7409 1.3665 25 1 7.4443 -6.8204 1.4935 26 6 4.1094 -6.1843 -1.4106 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 4.5298 -1.3157 0.0092 31 1 3.7478 -3.3354 -0.0015 32 1 1.7576 -5.1308 -0.8914 33 1 1.7581 -5.1316 0.8885 34 1 2.2242 -7.5960 -0.2404 35 1 3.4317 -7.7741 1.1045 36 1 5.8477 -7.4814 0.5704 37 1 9.6536 -9.5539 -0.6885 38 1 5.0321 -5.6606 -1.6606 39 1 3.3524 -6.1062 -2.1909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086442946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:03 Heat of formation + Delta-G solvation = 37.652649 kcal Electronic energy + Delta-G solvation = -20835.162338 eV Core-core repulsion = 17586.043577 eV Total energy + Delta-G solvation = -3249.118760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40346 -40.56771 -39.60369 -36.03064 -34.96021 -33.91970 -32.71510 -31.53210 -29.11689 -28.40881 -26.41949 -25.45944 -24.08377 -23.02021 -21.48182 -20.83313 -20.12761 -19.53509 -19.29053 -17.44100 -16.95212 -16.54368 -16.47634 -16.11307 -15.65219 -15.30941 -15.26609 -14.85035 -14.62396 -14.50029 -14.03539 -13.87583 -13.72995 -13.31189 -13.07498 -12.97973 -12.94603 -12.64558 -12.15085 -12.00014 -11.85370 -11.59389 -11.52058 -10.99092 -10.90720 -10.70683 -10.53926 -10.11885 -9.71374 -9.26975 -8.00757 -5.34420 0.53707 1.08570 1.38646 1.44022 1.50901 1.79914 2.34463 2.47254 2.50280 3.29761 3.49440 3.55105 3.76370 3.79005 3.84885 4.06475 4.21995 4.30461 4.34136 4.43469 4.48156 4.76588 4.77751 4.84544 4.92488 4.98198 4.99643 5.03149 5.13650 5.31988 5.38100 5.47020 5.57061 5.61333 5.83509 6.24545 6.24667 6.47368 6.70668 7.10176 7.35374 7.87092 8.06076 9.20888 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024543 B = 0.003392 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.558827 B = 8253.932217 C = 8983.679869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.118 3.882 3 N -0.328 5.328 4 N -0.448 5.448 5 H 0.460 0.540 6 C 0.134 3.866 7 C -0.321 4.321 8 C 0.591 3.409 9 O -0.583 6.583 10 N -0.715 5.715 11 C 0.141 3.859 12 C -0.103 4.103 13 H 0.092 0.908 14 C -0.134 4.134 15 C 0.144 3.856 16 H 0.054 0.946 17 N -0.733 5.733 18 C -0.231 4.231 19 H 0.055 0.945 20 C -0.067 4.067 21 N -0.986 5.986 22 Si 0.957 3.043 23 H -0.281 1.281 24 H -0.298 1.298 25 H -0.244 1.244 26 C -0.154 4.154 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.229 0.771 31 H 0.410 0.590 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.367 0.633 37 H 0.257 0.743 38 H 0.054 0.946 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 20.279 4.762 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.152 5.152 4 N -0.154 5.154 5 H 0.309 0.691 6 C -0.020 4.020 7 C -0.336 4.336 8 C 0.379 3.621 9 O -0.464 6.464 10 N -0.366 5.366 11 C 0.018 3.982 12 C -0.121 4.121 13 H 0.111 0.889 14 C -0.173 4.173 15 C 0.034 3.966 16 H 0.072 0.928 17 N -0.375 5.375 18 C -0.362 4.362 19 H 0.073 0.927 20 C -0.258 4.258 21 N -0.637 5.637 22 Si 0.784 3.216 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.168 1.168 26 C -0.194 4.194 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.245 0.755 31 H 0.246 0.754 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.270 21.233 4.587 25.455 hybrid contribution 1.660 -0.559 0.655 1.870 sum -11.609 20.674 5.242 24.283 Atomic orbital electron populations 1.20324 0.85437 1.03908 1.03820 1.22744 0.98071 0.89169 0.94995 1.77119 0.87640 1.22789 1.27603 1.46161 1.07510 1.06010 1.55697 0.69126 1.23759 0.99209 0.85766 0.93297 1.20340 0.93590 0.93776 1.25880 1.17459 0.85249 0.84289 0.75073 1.90712 1.17891 1.84924 1.52878 1.45755 1.10030 1.05768 1.75082 1.21281 0.95949 0.79105 1.01894 1.22597 0.96807 0.94610 0.98119 0.88940 1.23347 0.99470 0.94602 0.99874 1.21357 0.84363 0.95441 0.95419 0.92774 1.42422 1.10782 1.65270 1.19055 1.19059 0.92273 1.25089 0.99818 0.92725 1.25545 0.96097 1.01392 1.02774 1.69896 1.05659 1.47707 1.40409 0.85382 0.76927 0.79375 0.79905 1.20769 1.22459 1.16842 1.23728 1.00566 0.98807 0.96346 0.89766 0.89911 0.89956 0.75519 0.75395 0.91684 0.91659 0.87642 0.91373 0.79885 0.93382 0.92673 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.92 71.24 0.71 -0.78 16 2 C 0.12 2.56 7.26 43.51 0.32 2.88 16 3 N -0.33 -6.63 12.63 -46.68 -0.59 -7.22 16 4 N -0.45 -5.50 7.29 -56.31 -0.41 -5.91 16 5 H 0.46 2.20 8.96 -213.43 -1.91 0.29 16 6 C 0.13 1.58 11.52 84.28 0.97 2.55 16 7 C -0.32 -6.41 6.13 -20.15 -0.12 -6.53 16 8 C 0.59 13.97 7.81 86.67 0.68 14.65 16 9 O -0.58 -17.85 14.92 -4.03 -0.06 -17.91 16 10 N -0.72 -13.66 5.54 -466.38 -2.59 -16.25 16 11 C 0.14 2.97 5.51 86.38 0.48 3.45 16 12 C -0.10 -2.35 3.64 -10.20 -0.04 -2.38 16 13 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.13 -3.42 7.39 31.12 0.23 -3.19 16 15 C 0.14 4.95 4.55 45.52 0.21 5.15 16 16 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 17 N -0.73 -31.96 5.12 -320.44 -1.64 -33.60 16 18 C -0.23 -12.76 10.45 84.03 0.88 -11.88 16 19 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 20 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 21 N -0.99 -62.19 13.97 21.65 0.30 -61.88 16 22 Si 0.96 43.37 27.74 68.60 1.90 45.27 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 26 C -0.15 -4.27 7.45 31.18 0.23 -4.04 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.85 6.55 -2.39 -0.02 1.83 16 30 H 0.23 0.60 7.46 -2.91 -0.02 0.58 16 31 H 0.41 5.62 7.40 -92.71 -0.69 4.94 16 32 H 0.06 1.46 7.85 -2.39 -0.02 1.44 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.11 2.25 8.10 -2.39 -0.02 2.23 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.37 15.08 5.76 -92.70 -0.53 14.54 16 37 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.20 7.90 -2.39 -0.02 2.18 16 Total: -1.00 -76.89 328.39 -0.17 -77.06 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -2.10 Total: 23.92 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.00 Total: -3.48 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -4.92 Total: -124.86 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.90 Total: 45.27 kcal Total: -76.89 -0.17 -77.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086442946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.715 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds