Wall clock time and date at job start Mon Mar 30 2020 23:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35560 * 125.82631 * 2 1 4 4 N 1.35405 * 107.16232 * 179.97438 * 3 2 1 5 5 H 0.97002 * 126.44098 * 179.72887 * 4 3 2 6 6 C 1.36671 * 107.12013 * 0.02562 * 4 3 2 7 7 C 1.47405 * 125.86271 * 179.97438 * 6 4 3 8 8 O 1.21608 * 120.00315 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99937 * 180.02562 * 7 6 4 10 10 C 1.46501 * 119.99892 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46990 * 179.97438 * 10 9 7 12 12 H 1.09008 * 112.85420 * 45.32597 * 11 10 9 13 13 C 1.53772 * 113.61626 * 176.52722 * 11 10 9 14 14 C 1.53780 * 87.08281 * 139.97862 * 13 11 10 15 15 H 1.09007 * 113.61467 * 219.93365 * 14 13 11 16 16 N 1.46496 * 113.61592 * 89.11689 * 14 13 11 17 17 C 1.36944 * 120.00282 * 154.99724 * 16 14 13 18 18 H 1.08001 * 119.99384 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00057 * 180.02562 * 17 16 14 20 20 N 1.31612 * 120.00312 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99801 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47154 * 59.99822 * 21 19 17 23 23 H 1.48493 * 109.46984 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46590 * 299.99661 * 21 19 17 25 25 C 1.53788 * 113.61019 * 274.13526 * 11 10 9 26 26 N 1.31610 * 108.27084 * 359.97438 * 6 4 3 27 27 H 1.09003 * 109.47045 * 90.00161 * 1 2 3 28 28 H 1.09001 * 109.47262 * 210.00223 * 1 2 3 29 29 H 1.09001 * 109.47420 * 330.00610 * 1 2 3 30 30 H 1.08001 * 126.42374 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00130 * 359.97438 * 9 7 6 32 32 H 1.09003 * 109.46680 * 299.99189 * 10 9 7 33 33 H 1.08998 * 109.47409 * 59.99468 * 10 9 7 34 34 H 1.09001 * 113.62026 * 254.52512 * 13 11 10 35 35 H 1.09001 * 113.61443 * 25.42917 * 13 11 10 36 36 H 0.96994 * 120.00329 * 335.00331 * 16 14 13 37 37 H 0.96998 * 120.00633 * 180.02562 * 20 19 17 38 38 H 1.09000 * 113.61485 * 334.56552 * 25 11 10 39 39 H 1.08999 * 113.61362 * 105.47585 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6658 0.0006 5 1 4.3789 1.2207 -0.0030 6 6 3.5465 -0.7004 0.0003 7 6 4.7174 -1.5959 0.0003 8 8 5.8402 -1.1287 -0.0001 9 7 4.5436 -2.9324 -0.0005 10 6 5.7074 -3.8223 0.0000 11 6 5.2362 -5.2780 -0.0004 12 1 4.4342 -5.4632 -0.7152 13 6 6.3845 -6.2971 -0.0853 14 6 5.6032 -7.1442 0.9329 15 1 6.2354 -7.6151 1.6858 16 7 4.6594 -8.0800 0.3166 17 6 4.2832 -9.2137 0.9863 18 1 4.6819 -9.4176 1.9691 19 6 3.3894 -10.1006 0.4020 20 7 2.9031 -9.8517 -0.7954 21 14 2.8756 -11.6466 1.3160 22 1 2.2235 -11.2712 2.5962 23 1 1.9204 -12.4199 0.4825 24 1 4.0742 -12.4774 1.5959 25 6 4.9491 -5.8328 1.4048 26 7 2.2861 -1.0792 0.0002 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.9712 2.1277 0.0004 31 1 3.6481 -3.3051 -0.0006 32 1 6.3087 -3.6345 -0.8896 33 1 6.3075 -3.6353 0.8904 34 1 6.4791 -6.7680 -1.0638 35 1 7.3327 -5.9194 0.2971 36 1 4.3011 -7.8967 -0.5659 37 1 2.2782 -10.4712 -1.2035 38 1 5.5042 -5.3279 2.1954 39 1 3.8865 -5.9294 1.6274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086500866.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:46 Heat of formation + Delta-G solvation = 21.562180 kcal Electronic energy + Delta-G solvation = -20652.278706 eV Core-core repulsion = 17402.462211 eV Total energy + Delta-G solvation = -3249.816495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28919 -40.76115 -39.75182 -36.12988 -35.05588 -34.19327 -32.50845 -31.87912 -29.17773 -27.69179 -26.42930 -25.76778 -24.46766 -22.96277 -21.65758 -21.26170 -20.13033 -19.48916 -19.19931 -17.54172 -17.16137 -16.95134 -16.66118 -16.05970 -15.73557 -15.60582 -15.07068 -14.95021 -14.67904 -14.55569 -13.99610 -13.77347 -13.57634 -13.28048 -13.05126 -12.92256 -12.91515 -12.62216 -12.19354 -12.07571 -11.73890 -11.48663 -11.35058 -11.28153 -11.20295 -10.93788 -10.79149 -10.23544 -9.40587 -8.99029 -7.94007 -5.22581 0.27246 1.48446 1.51342 1.52072 1.54115 1.57402 2.28345 2.51412 2.56960 3.17751 3.38372 3.71970 3.78262 3.83256 3.97726 4.10506 4.14574 4.32698 4.38247 4.40777 4.69957 4.72624 4.84569 4.93673 4.95190 4.98388 4.99250 5.10575 5.12327 5.21144 5.35564 5.44334 5.53783 5.64877 5.67103 6.15701 6.29238 6.29742 6.77307 6.99321 7.34247 8.11822 8.33815 9.29161 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021065 B = 0.003229 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.907759 B = 8670.537466 C = 9716.168994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.032 4.032 3 C 0.006 3.994 4 N -0.515 5.515 5 H 0.440 0.560 6 C 0.112 3.888 7 C 0.603 3.397 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.140 3.860 11 C -0.105 4.105 12 H 0.078 0.922 13 C -0.130 4.130 14 C 0.144 3.856 15 H 0.062 0.938 16 N -0.721 5.721 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.277 1.277 25 C -0.156 4.156 26 N -0.465 5.465 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.235 0.765 31 H 0.415 0.585 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.093 0.907 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 24.915 1.962 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.134 4.134 4 N -0.118 5.118 5 H 0.282 0.718 6 C -0.147 4.147 7 C 0.388 3.612 8 O -0.454 6.454 9 N -0.345 5.345 10 C 0.018 3.982 11 C -0.124 4.124 12 H 0.096 0.904 13 C -0.170 4.170 14 C 0.034 3.966 15 H 0.081 0.919 16 N -0.359 5.359 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.196 4.196 26 N -0.189 5.189 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.251 0.749 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.703 24.187 2.098 24.288 hybrid contribution -0.401 -0.176 -0.122 0.454 sum 0.302 24.011 1.976 24.094 Atomic orbital electron populations 1.20150 0.85326 1.03767 1.03148 1.21568 0.98468 0.88068 1.08556 1.23500 0.81727 1.02486 1.05683 1.42954 1.10301 1.06582 1.51954 0.71839 1.22347 0.93274 0.83506 1.15601 1.16648 0.85641 0.82363 0.76507 1.90798 1.24714 1.76578 1.53291 1.45748 1.11895 1.04613 1.72252 1.21478 0.86935 0.87168 1.02657 1.22507 0.99306 0.92140 0.98445 0.90381 1.23334 0.97752 0.95886 0.99995 1.21424 0.91141 0.88889 0.95122 0.91948 1.42318 1.51617 1.22576 1.19391 1.19650 1.20035 0.98199 0.99758 0.90521 1.25563 1.00867 1.02487 0.97826 1.69804 1.36256 1.39071 1.16856 0.85214 0.77624 0.79462 0.77478 1.20453 1.22246 1.20321 1.23772 1.00682 0.99083 0.96099 1.70076 0.99819 1.32899 1.16153 0.90582 0.92250 0.88220 0.74901 0.74893 0.90873 0.90399 0.92222 0.87155 0.79405 0.94012 0.88826 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.42 71.24 0.74 -0.14 16 2 C -0.03 -0.62 7.07 41.75 0.30 -0.32 16 3 C 0.01 0.08 11.91 83.52 0.99 1.07 16 4 N -0.52 -8.68 6.14 -188.02 -1.16 -9.84 16 5 H 0.44 5.32 8.96 -92.71 -0.83 4.49 16 6 C 0.11 2.81 7.95 136.28 1.08 3.89 16 7 C 0.60 16.99 7.81 86.66 0.68 17.67 16 8 O -0.57 -18.15 17.09 -4.05 -0.07 -18.22 16 9 N -0.70 -18.82 5.55 -466.39 -2.59 -21.41 16 10 C 0.14 3.65 5.50 86.38 0.47 4.12 16 11 C -0.11 -3.13 3.62 -10.27 -0.04 -3.17 16 12 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 13 C -0.13 -3.99 7.39 31.12 0.23 -3.76 16 14 C 0.14 5.58 4.57 45.58 0.21 5.79 16 15 H 0.06 2.39 8.10 -2.38 -0.02 2.38 16 16 N -0.72 -36.35 5.31 -320.16 -1.70 -38.05 16 17 C -0.24 -13.64 9.97 84.03 0.84 -12.81 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 20 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 21 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 C -0.16 -5.16 7.44 31.18 0.23 -4.93 16 26 N -0.46 -12.16 10.89 -177.64 -1.94 -14.09 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 31 H 0.41 11.38 8.15 -92.71 -0.76 10.62 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.95 7.87 -2.39 -0.02 1.93 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 36 H 0.37 20.22 7.90 -92.71 -0.73 19.49 16 37 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.09 2.63 7.92 -2.39 -0.02 2.61 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.86 336.28 -0.16 -73.02 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -1.23 Total: 36.03 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.21 Total: 3.55 kcal Atomic # 7 Polarization: -135.62 SS G_CDS: -7.10 Total: -142.72 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.07 Total: -18.22 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.86 -0.16 -73.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086500866.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.582 kcal (2) G-P(sol) polarization free energy of solvation -72.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds