Wall clock time and date at job start Mon Mar 30 2020 23:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33323 * 126.10691 * 2 1 4 4 C 1.30861 * 109.68480 * 179.97438 * 3 2 1 5 5 N 1.34492 * 109.16397 * 359.76123 * 4 3 2 6 6 H 0.97003 * 126.46854 * 180.23449 * 5 4 3 7 7 C 1.36666 * 126.11104 * 179.97438 * 2 1 3 8 8 C 1.46763 * 126.84075 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00136 * 0.27210 * 8 7 2 10 10 N 1.34784 * 119.99737 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.08996 * 112.84889 * 43.80542 * 12 11 10 14 14 C 1.53781 * 113.61737 * 174.99885 * 12 11 10 15 15 C 1.53783 * 87.08492 * 139.97835 * 14 12 11 16 16 H 1.08997 * 113.62107 * 220.02144 * 15 14 12 17 17 N 1.46500 * 113.61197 * 89.11340 * 15 14 12 18 18 C 1.36941 * 119.99933 * 155.00016 * 17 15 14 19 19 H 1.07996 * 119.99715 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99825 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99521 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00060 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47023 * 90.00079 * 22 20 18 24 24 H 1.48499 * 109.46657 * 209.99602 * 22 20 18 25 25 H 1.48497 * 109.47133 * 329.99640 * 22 20 18 26 26 C 1.53781 * 113.61556 * 272.49646 * 12 11 10 27 27 H 1.09003 * 109.47305 * 270.04028 * 1 2 3 28 28 H 1.08994 * 109.47285 * 30.04659 * 1 2 3 29 29 H 1.09000 * 109.47144 * 150.04679 * 1 2 3 30 30 H 1.07999 * 125.41301 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.08998 * 113.61870 * 254.53101 * 14 12 11 35 35 H 1.09005 * 113.61064 * 25.34842 * 14 12 11 36 36 H 0.97001 * 119.99997 * 335.00985 * 17 15 14 37 37 H 0.97003 * 120.00004 * 180.02562 * 21 20 18 38 38 H 1.09003 * 113.61530 * 334.56739 * 26 12 11 39 39 H 1.08999 * 113.61279 * 105.46747 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6121 -0.6362 0.0062 6 1 4.4189 -1.1748 0.0111 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0006 9 8 0.6963 -2.7800 -0.0048 10 7 2.8005 -3.4937 0.0006 11 6 2.3711 -4.8943 0.0013 12 6 3.6006 -5.8048 0.0017 13 1 4.3721 -5.4737 0.6969 14 6 3.2605 -7.2994 0.1253 15 6 4.3720 -7.5571 -0.9058 16 1 4.1187 -8.3231 -1.6387 17 7 5.6938 -7.7563 -0.3063 18 6 6.6481 -8.4748 -0.9759 19 1 6.4263 -8.8942 -1.9461 20 6 7.9003 -8.6640 -0.4076 21 7 8.8176 -9.3542 -1.0515 22 14 8.2835 -7.9392 1.2709 23 1 7.9302 -8.9218 2.3267 24 1 9.7319 -7.6224 1.3542 25 1 7.4931 -6.6973 1.4659 26 6 4.1323 -6.1227 -1.4058 27 1 -0.3634 0.0007 1.0277 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3633 -0.8904 -0.5131 30 1 4.3969 1.3745 0.0003 31 1 3.7458 -3.2763 0.0009 32 1 1.7736 -5.0908 0.8916 33 1 1.7729 -5.0914 -0.8885 34 1 3.4732 -7.7157 1.1099 35 1 2.2627 -7.5512 -0.2342 36 1 5.8929 -7.3794 0.5650 37 1 9.6926 -9.4867 -0.6543 38 1 3.3735 -6.0531 -2.1852 39 1 5.0489 -5.5891 -1.6571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086566027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:49 Heat of formation + Delta-G solvation = 49.394901 kcal Electronic energy + Delta-G solvation = -20902.321371 eV Core-core repulsion = 17653.711793 eV Total energy + Delta-G solvation = -3248.609578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.51857 -39.71559 -38.62219 -35.06026 -33.65745 -33.14158 -31.48495 -30.72220 -28.33295 -26.88769 -25.28345 -23.83633 -23.05956 -21.99821 -21.29790 -20.08968 -19.24025 -18.44567 -17.74324 -16.41569 -16.21704 -16.02379 -15.23600 -14.86989 -14.74855 -14.47127 -14.22094 -13.66719 -13.53562 -13.19254 -12.99406 -12.88277 -12.61081 -12.31995 -12.15026 -11.69361 -11.46687 -11.00367 -10.74114 -10.61530 -10.38870 -10.33091 -10.25934 -9.99828 -9.76020 -9.63405 -9.30780 -9.00847 -8.75805 -7.39949 -5.88245 -3.24945 1.00505 2.54248 2.54753 2.93890 3.08567 3.24748 3.29191 3.35273 4.14106 4.47054 4.49894 4.70674 4.80667 4.84634 4.91227 5.00263 5.29966 5.31038 5.38186 5.40603 5.59922 5.65084 5.70582 5.74966 5.79919 5.85300 6.02718 6.12811 6.16042 6.31406 6.38119 6.50628 6.62351 6.78568 6.83621 7.19677 7.59792 7.89399 7.92369 8.31384 9.08724 9.80793 9.99766 11.29842 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.003415 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.713803 B = 8197.758901 C = 8923.141420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.096 3.904 3 N -0.501 5.501 4 C 0.221 3.779 5 N -0.555 5.555 6 H 0.424 0.576 7 C -0.094 4.094 8 C 0.593 3.407 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.132 3.868 12 C -0.125 4.125 13 H 0.088 0.912 14 C -0.148 4.148 15 C 0.173 3.827 16 H 0.072 0.928 17 N -0.730 5.730 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.931 5.931 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.279 1.279 26 C -0.167 4.167 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.216 0.784 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 17.502 3.103 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.038 4.038 3 N -0.221 5.221 4 C -0.063 4.063 5 N -0.160 5.160 6 H 0.263 0.737 7 C -0.210 4.210 8 C 0.379 3.621 9 O -0.402 6.402 10 N -0.375 5.375 11 C 0.009 3.991 12 C -0.144 4.144 13 H 0.107 0.893 14 C -0.188 4.188 15 C 0.061 3.939 16 H 0.090 0.910 17 N -0.370 5.370 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.578 5.578 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.208 4.208 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.228 0.772 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.131 17.883 2.931 22.379 hybrid contribution 1.932 -0.312 1.258 2.326 sum -11.199 17.571 4.189 21.253 Atomic orbital electron populations 1.20299 0.86465 1.03717 1.03065 1.21099 0.96960 0.86618 0.99145 1.70157 1.00485 1.30465 1.21007 1.25174 0.97447 0.82070 1.01659 1.43371 1.08091 1.08896 1.55666 0.73735 1.20987 0.84371 0.95206 1.20404 1.16834 0.85947 0.82581 0.76747 1.90816 1.16003 1.82926 1.50441 1.45968 1.09200 1.06962 1.75344 1.21529 0.97061 0.78201 1.02287 1.22766 0.96375 0.95295 0.99919 0.89338 1.23463 1.00187 0.93742 1.01359 1.21000 0.85004 0.94063 0.93841 0.90953 1.42518 1.09964 1.63907 1.20609 1.19116 0.91277 1.25217 1.02203 0.88987 1.24690 0.96195 1.00022 0.98100 1.69696 1.05138 1.44505 1.38462 0.86557 0.77401 0.78951 0.85564 1.20942 1.21638 1.20571 1.23874 1.00527 1.01950 0.94448 0.90745 0.91056 0.89212 0.76740 0.77175 0.91409 0.90984 0.91361 0.89839 0.80559 0.92917 0.90829 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.88 36.00 0.36 -0.47 16 2 C 0.10 1.15 7.15 -82.52 -0.59 0.56 16 3 N -0.50 -5.66 11.20 -10.65 -0.12 -5.78 16 4 C 0.22 1.70 13.01 -90.57 -1.18 0.52 16 5 N -0.56 -4.21 6.07 -10.79 -0.07 -4.27 16 6 H 0.42 1.93 8.32 -40.82 -0.34 1.59 16 7 C -0.09 -1.04 7.08 -82.14 -0.58 -1.62 16 8 C 0.59 7.36 7.79 -12.81 -0.10 7.26 16 9 O -0.53 -7.97 14.81 5.21 0.08 -7.89 16 10 N -0.72 -7.73 5.55 -61.59 -0.34 -8.07 16 11 C 0.13 1.53 5.51 -4.05 -0.02 1.51 16 12 C -0.12 -1.59 3.63 -89.81 -0.33 -1.92 16 13 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.15 -2.06 7.39 -25.92 -0.19 -2.25 16 15 C 0.17 3.05 4.56 -67.12 -0.31 2.74 16 16 H 0.07 1.33 8.10 -51.93 -0.42 0.90 16 17 N -0.73 -16.21 5.11 -52.64 -0.27 -16.48 16 18 C -0.25 -6.72 10.45 -15.06 -0.16 -6.88 16 19 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 22 Si 0.88 21.15 27.74 -169.99 -4.71 16.44 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 26 C -0.17 -2.46 7.43 -25.92 -0.19 -2.65 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.03 6.47 -51.93 -0.34 0.69 16 30 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.39 3.40 7.72 -40.82 -0.31 3.08 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.36 7.84 5.76 -40.82 -0.24 7.61 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 38 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -34.03 328.05 -8.53 -42.57 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.43 Total: 9.34 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.38 Total: -3.14 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.02 Total: -62.26 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.08 Total: -7.89 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.03 -8.53 -42.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086566027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.964 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds