Wall clock time and date at job start Mon Mar 30 2020 23:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33323 * 126.10691 * 2 1 4 4 C 1.30861 * 109.68480 * 179.97438 * 3 2 1 5 5 N 1.34492 * 109.16397 * 359.76123 * 4 3 2 6 6 H 0.97003 * 126.46854 * 180.23449 * 5 4 3 7 7 C 1.36666 * 126.11104 * 179.97438 * 2 1 3 8 8 C 1.46763 * 126.84075 * 0.02562 * 7 2 1 9 9 O 1.21677 * 120.00136 * 0.27210 * 8 7 2 10 10 N 1.34784 * 119.99737 * 179.97438 * 8 7 2 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.08996 * 112.84889 * 43.80542 * 12 11 10 14 14 C 1.53781 * 113.61737 * 174.99885 * 12 11 10 15 15 C 1.53783 * 87.08492 * 139.97835 * 14 12 11 16 16 H 1.08997 * 113.62107 * 220.02144 * 15 14 12 17 17 N 1.46500 * 113.61197 * 89.11340 * 15 14 12 18 18 C 1.36941 * 119.99933 * 155.00016 * 17 15 14 19 19 H 1.07996 * 119.99715 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99825 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99521 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00060 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47023 * 90.00079 * 22 20 18 24 24 H 1.48499 * 109.46657 * 209.99602 * 22 20 18 25 25 H 1.48497 * 109.47133 * 329.99640 * 22 20 18 26 26 C 1.53781 * 113.61556 * 272.49646 * 12 11 10 27 27 H 1.09003 * 109.47305 * 270.04028 * 1 2 3 28 28 H 1.08994 * 109.47285 * 30.04659 * 1 2 3 29 29 H 1.09000 * 109.47144 * 150.04679 * 1 2 3 30 30 H 1.07999 * 125.41301 * 179.97438 * 4 3 2 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.08998 * 113.61870 * 254.53101 * 14 12 11 35 35 H 1.09005 * 113.61064 * 25.34842 * 14 12 11 36 36 H 0.97001 * 119.99997 * 335.00985 * 17 15 14 37 37 H 0.97003 * 120.00004 * 180.02562 * 21 20 18 38 38 H 1.09003 * 113.61530 * 334.56739 * 26 12 11 39 39 H 1.08999 * 113.61279 * 105.46747 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6121 -0.6362 0.0062 6 1 4.4189 -1.1748 0.0111 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5072 0.0006 9 8 0.6963 -2.7800 -0.0048 10 7 2.8005 -3.4937 0.0006 11 6 2.3711 -4.8943 0.0013 12 6 3.6006 -5.8048 0.0017 13 1 4.3721 -5.4737 0.6969 14 6 3.2605 -7.2994 0.1253 15 6 4.3720 -7.5571 -0.9058 16 1 4.1187 -8.3231 -1.6387 17 7 5.6938 -7.7563 -0.3063 18 6 6.6481 -8.4748 -0.9759 19 1 6.4263 -8.8942 -1.9461 20 6 7.9003 -8.6640 -0.4076 21 7 8.8176 -9.3542 -1.0515 22 14 8.2835 -7.9392 1.2709 23 1 7.9302 -8.9218 2.3267 24 1 9.7319 -7.6224 1.3542 25 1 7.4931 -6.6973 1.4659 26 6 4.1323 -6.1227 -1.4058 27 1 -0.3634 0.0007 1.0277 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3633 -0.8904 -0.5131 30 1 4.3969 1.3745 0.0003 31 1 3.7458 -3.2763 0.0009 32 1 1.7736 -5.0908 0.8916 33 1 1.7729 -5.0914 -0.8885 34 1 3.4732 -7.7157 1.1099 35 1 2.2627 -7.5512 -0.2342 36 1 5.8929 -7.3794 0.5650 37 1 9.6926 -9.4867 -0.6543 38 1 3.3735 -6.0531 -2.1852 39 1 5.0489 -5.5891 -1.6571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086566027.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:48 Heat of formation + Delta-G solvation = 24.815853 kcal Electronic energy + Delta-G solvation = -20903.387198 eV Core-core repulsion = 17653.711793 eV Total energy + Delta-G solvation = -3249.675405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22833 -40.75429 -39.79030 -36.21423 -35.15147 -34.12057 -32.73025 -32.15106 -29.37941 -27.81498 -26.47641 -25.48174 -24.06486 -23.18000 -22.12880 -20.98617 -20.25052 -19.67408 -19.48066 -17.27423 -17.16342 -16.85726 -16.63131 -16.20591 -15.78142 -15.46554 -15.38918 -14.98375 -14.72040 -14.61480 -14.09592 -13.94272 -13.74840 -13.38943 -13.14864 -13.08748 -13.03482 -12.71091 -12.20258 -11.89708 -11.69162 -11.63526 -11.47563 -11.07650 -11.03920 -10.95623 -10.80012 -10.24418 -9.52363 -9.31139 -8.03839 -5.37874 0.22820 1.35211 1.41037 1.47797 1.82783 1.87053 2.13802 2.21731 2.47002 3.26468 3.49664 3.52500 3.69364 3.72344 3.85741 3.97239 4.12525 4.26037 4.27490 4.34477 4.66058 4.69888 4.75770 4.80907 4.92243 4.95690 4.97035 5.01541 5.08166 5.20651 5.29418 5.43132 5.52230 5.53627 5.79690 6.21468 6.28027 6.40120 6.89519 7.03958 7.06716 7.83264 8.02038 9.17751 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024823 B = 0.003415 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.713803 B = 8197.758901 C = 8923.141420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.077 3.923 3 N -0.537 5.537 4 C 0.240 3.760 5 N -0.542 5.542 6 H 0.439 0.561 7 C -0.111 4.111 8 C 0.592 3.408 9 O -0.559 6.559 10 N -0.715 5.715 11 C 0.140 3.860 12 C -0.105 4.105 13 H 0.091 0.909 14 C -0.133 4.133 15 C 0.144 3.856 16 H 0.056 0.944 17 N -0.733 5.733 18 C -0.233 4.233 19 H 0.055 0.945 20 C -0.066 4.066 21 N -0.985 5.985 22 Si 0.957 3.043 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.246 1.246 26 C -0.155 4.155 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.262 0.738 31 H 0.407 0.593 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.456 19.596 4.613 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 N -0.257 5.257 4 C -0.044 4.044 5 N -0.149 5.149 6 H 0.281 0.719 7 C -0.227 4.227 8 C 0.380 3.620 9 O -0.438 6.438 10 N -0.366 5.366 11 C 0.016 3.984 12 C -0.123 4.123 13 H 0.109 0.891 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.075 0.925 17 N -0.375 5.375 18 C -0.364 4.364 19 H 0.073 0.927 20 C -0.257 4.257 21 N -0.635 5.635 22 Si 0.784 3.216 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.171 1.171 26 C -0.195 4.195 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.277 0.723 31 H 0.242 0.758 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.491 19.995 4.440 24.526 hybrid contribution 1.994 -0.969 0.666 2.315 sum -11.496 19.026 5.106 22.809 Atomic orbital electron populations 1.20253 0.86518 1.03399 1.03129 1.21345 0.97554 0.87349 0.99545 1.70156 1.02006 1.30763 1.22821 1.26081 0.97598 0.82407 0.98361 1.43307 1.07529 1.09112 1.54905 0.71913 1.20758 0.85788 0.94334 1.21825 1.16986 0.85600 0.83256 0.76165 1.90797 1.17409 1.83518 1.52119 1.45835 1.09678 1.06361 1.74689 1.21381 0.96239 0.78325 1.02409 1.22577 0.96662 0.94883 0.98210 0.89086 1.23366 0.99620 0.94267 0.99992 1.21346 0.84304 0.95470 0.95408 0.92536 1.42423 1.10706 1.63665 1.20714 1.19063 0.92289 1.24191 1.00880 0.92671 1.25546 0.96113 1.01314 1.02755 1.69892 1.05688 1.47109 1.40856 0.85381 0.76955 0.79331 0.79889 1.20685 1.22391 1.17053 1.23719 1.00551 0.98977 0.96294 0.90501 0.90325 0.90470 0.72283 0.75808 0.91139 0.91140 0.91345 0.87458 0.79921 0.93327 0.89126 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.88 71.23 0.70 -0.88 16 2 C 0.08 1.75 7.15 41.96 0.30 2.05 16 3 N -0.54 -11.12 11.20 -187.59 -2.10 -13.22 16 4 C 0.24 2.91 13.01 180.33 2.35 5.25 16 5 N -0.54 -6.60 6.07 -188.04 -1.14 -7.74 16 6 H 0.44 2.43 8.32 -92.71 -0.77 1.66 16 7 C -0.11 -2.27 7.08 40.01 0.28 -1.98 16 8 C 0.59 13.76 7.79 86.47 0.67 14.43 16 9 O -0.56 -16.54 14.81 -4.28 -0.06 -16.61 16 10 N -0.71 -13.37 5.55 -467.00 -2.59 -15.96 16 11 C 0.14 2.82 5.51 86.38 0.48 3.30 16 12 C -0.10 -2.34 3.63 -10.27 -0.04 -2.38 16 13 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 14 C -0.13 -3.33 7.39 31.12 0.23 -3.10 16 15 C 0.14 4.91 4.56 45.52 0.21 5.12 16 16 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 17 N -0.73 -31.78 5.11 -320.44 -1.64 -33.42 16 18 C -0.23 -12.81 10.45 84.03 0.88 -11.94 16 19 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 20 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 21 N -0.99 -61.92 13.97 21.65 0.30 -61.62 16 22 Si 0.96 43.25 27.74 68.60 1.90 45.16 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.25 -9.64 6.52 99.48 0.65 -8.99 16 26 C -0.16 -4.22 7.43 31.12 0.23 -3.99 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.80 6.47 -2.39 -0.02 1.78 16 30 H 0.26 0.40 8.06 -2.91 -0.02 0.37 16 31 H 0.41 5.68 7.72 -92.71 -0.72 4.96 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.50 7.85 -2.38 -0.02 1.48 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 2.21 8.10 -2.38 -0.02 2.19 16 36 H 0.37 15.00 5.76 -92.71 -0.53 14.46 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.09 2.18 7.90 -2.39 -0.02 2.16 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.16 328.05 0.44 -75.71 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.98 Total: 25.12 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.76 Total: 2.58 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -7.17 Total: -131.96 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.06 Total: -16.61 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.90 Total: 45.16 kcal Total: -76.16 0.44 -75.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086566027.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.530 kcal (2) G-P(sol) polarization free energy of solvation -76.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds