Wall clock time and date at job start Tue Mar 31 2020 00:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 H 1.09004 * 109.99558 * 311.50437 * 3 2 1 5 5 C 1.54334 * 109.98811 * 190.47005 * 3 2 1 6 6 H 1.08990 * 110.51620 * 336.97710 * 5 3 2 7 7 N 1.46498 * 110.84819 * 100.19757 * 5 3 2 8 8 C 1.34782 * 120.00271 * 200.14623 * 7 5 3 9 9 O 1.21604 * 119.99683 * 359.97438 * 8 7 5 10 10 C 1.47421 * 120.00219 * 179.97438 * 8 7 5 11 11 C 1.41294 * 126.41748 * 359.68767 * 10 8 7 12 12 N 1.30448 * 108.02098 * 179.85413 * 11 10 8 13 13 N 1.39930 * 108.89993 * 0.40590 * 12 11 10 14 14 H 0.96998 * 125.75460 * 179.73682 * 13 12 11 15 15 C 1.34262 * 108.49231 * 359.73952 * 13 12 11 16 16 C 1.55153 * 103.01853 * 218.66133 * 5 3 2 17 17 C 1.54913 * 101.58371 * 35.30948 * 16 5 3 18 18 N 1.47023 * 109.88140 * 72.60261 * 3 2 1 19 19 C 1.36933 * 125.65060 * 298.38933 * 18 3 2 20 20 H 1.07999 * 119.99450 * 46.92747 * 19 18 3 21 21 C 1.38808 * 120.00266 * 226.92697 * 19 18 3 22 22 N 1.31615 * 119.99860 * 192.98878 * 21 19 18 23 23 Si 1.86801 * 119.99950 * 12.98663 * 21 19 18 24 24 H 1.48498 * 109.47048 * 267.29772 * 23 21 19 25 25 H 1.48498 * 109.47148 * 27.29592 * 23 21 19 26 26 H 1.48503 * 109.46870 * 147.29832 * 23 21 19 27 27 H 1.09002 * 109.47252 * 38.58508 * 1 2 3 28 28 H 1.09004 * 109.46464 * 158.57866 * 1 2 3 29 29 H 1.08997 * 109.47332 * 278.57757 * 1 2 3 30 30 H 1.08995 * 109.47450 * 239.99999 * 2 1 3 31 31 H 1.09006 * 109.46711 * 119.99224 * 2 1 3 32 32 H 0.97009 * 120.00501 * 20.14486 * 7 5 3 33 33 H 1.07998 * 125.98319 * 359.97438 * 11 10 8 34 34 H 1.07997 * 126.29135 * 179.97438 * 15 13 12 35 35 H 1.08996 * 111.00845 * 277.23300 * 16 5 3 36 36 H 1.09003 * 110.99996 * 153.38430 * 16 5 3 37 37 H 1.08990 * 110.36642 * 204.15055 * 17 16 5 38 38 H 1.09002 * 110.45698 * 81.87214 * 17 16 5 39 39 H 0.97002 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5242 2.0202 -0.7671 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5083 0.0054 7 7 3.8424 1.7956 -1.6626 8 6 5.0363 1.4798 -2.2025 9 8 5.8796 0.9205 -1.5281 10 6 5.3198 1.8123 -3.6104 11 6 4.4421 2.4518 -4.5144 12 7 5.0574 2.5708 -5.6584 13 7 6.3358 2.0131 -5.5457 14 1 6.9985 1.9673 -6.2525 15 6 6.4903 1.5519 -4.2943 16 6 4.0623 2.5905 0.6787 17 6 3.1226 2.4175 1.8981 18 7 1.8169 2.0518 1.3194 19 6 0.5985 2.2426 1.9146 20 1 -0.1239 1.4401 1.9352 21 6 0.2921 3.4674 2.4914 22 7 -0.7564 3.5800 3.2790 23 14 1.3679 4.9559 2.1499 24 1 2.4093 5.0659 3.2027 25 1 2.0186 4.8026 0.8240 26 1 0.5307 6.1825 2.1516 27 1 -0.3634 0.8033 -0.6409 28 1 -0.3632 -0.9567 -0.3754 29 1 -0.3634 0.1533 1.0161 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.1698 2.2421 -2.2005 33 1 3.4384 2.7854 -4.2957 34 1 7.3688 1.0662 -3.8960 35 1 3.9313 3.5708 0.2205 36 1 5.1026 2.4289 0.9611 37 1 3.0435 3.3529 2.4518 38 1 3.4853 1.6218 2.5487 39 1 -0.9704 4.4358 3.6824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087510763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:16 Heat of formation + Delta-G solvation = 59.773343 kcal Electronic energy + Delta-G solvation = -21951.191004 eV Core-core repulsion = 18703.031469 eV Total energy + Delta-G solvation = -3248.159535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54317 -39.42156 -37.72834 -34.09438 -32.55321 -32.34646 -31.79344 -30.56158 -29.12789 -27.06409 -24.55828 -22.96555 -22.19446 -21.94809 -20.53650 -20.15662 -19.53507 -18.53995 -16.90812 -16.37263 -16.12928 -15.29493 -15.03648 -14.79994 -14.34718 -14.13771 -13.95328 -13.63248 -13.08735 -12.79239 -12.57839 -12.40536 -12.17341 -11.84270 -11.44546 -11.39255 -11.16633 -10.89175 -10.77273 -10.43050 -10.22421 -10.13863 -9.99104 -9.89838 -9.72538 -9.39357 -9.10934 -8.66406 -8.50480 -6.59929 -5.98027 -3.56818 1.33440 1.97207 2.42313 3.33064 3.40045 3.45368 3.49774 3.51550 4.42179 4.52042 4.58439 4.93207 5.04525 5.10581 5.18800 5.26590 5.46336 5.51489 5.64779 5.87038 5.94090 6.00259 6.07945 6.12968 6.25695 6.41894 6.47527 6.56141 6.61536 6.69709 6.78070 6.80944 6.90225 7.09172 7.11131 7.19126 7.73962 8.04396 8.40845 8.44857 8.88289 9.65267 10.28980 11.14471 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.004755 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.709165 B = 5887.448166 C = 6202.776489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.154 3.846 4 H 0.045 0.955 5 C 0.138 3.862 6 H 0.095 0.905 7 N -0.711 5.711 8 C 0.593 3.407 9 O -0.553 6.553 10 C -0.289 4.289 11 C 0.086 3.914 12 N -0.298 5.298 13 N -0.466 5.466 14 H 0.444 0.556 15 C 0.130 3.870 16 C -0.146 4.146 17 C 0.119 3.881 18 N -0.598 5.598 19 C -0.252 4.252 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.904 5.904 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.266 1.266 26 H -0.303 1.303 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.398 0.602 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.033 0.967 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.422 -3.565 -15.601 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.047 3.953 4 H 0.063 0.937 5 C 0.033 3.967 6 H 0.113 0.887 7 N -0.361 5.361 8 C 0.380 3.620 9 O -0.432 6.432 10 C -0.304 4.304 11 C -0.103 4.103 12 N -0.119 5.119 13 N -0.172 5.172 14 H 0.288 0.712 15 C -0.022 4.022 16 C -0.185 4.185 17 C -0.006 4.006 18 N -0.325 5.325 19 C -0.380 4.380 20 H 0.107 0.893 21 C -0.160 4.160 22 N -0.545 5.545 23 Si 0.718 3.282 24 H -0.214 1.214 25 H -0.191 1.191 26 H -0.230 1.230 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.208 0.792 34 H 0.208 0.792 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.698 -3.409 -16.152 20.826 hybrid contribution 0.613 0.930 0.159 1.125 sum 13.311 -2.480 -15.992 20.954 Atomic orbital electron populations 1.21850 0.95558 0.99177 1.03509 1.21909 0.96779 0.97452 1.00202 1.21314 0.90351 0.93369 0.90246 0.93748 1.22055 0.96829 0.98701 0.79124 0.88657 1.45811 1.15990 1.61064 1.13216 1.17188 0.81941 0.77967 0.84887 1.90760 1.46276 1.43445 1.62713 1.20415 0.96648 1.16504 0.96784 1.24167 1.00028 0.96330 0.89764 1.77165 0.91462 1.20368 1.22862 1.46234 1.13990 1.46084 1.10871 0.71193 1.23053 0.99398 0.95031 0.84763 1.23189 0.99292 0.98632 0.97405 1.21896 0.86576 0.98310 0.93831 1.44497 1.01555 1.72777 1.13690 1.18718 0.90920 0.96387 1.31999 0.89261 1.25730 0.95440 0.97567 0.97309 1.69779 1.28027 1.25375 1.31291 0.86688 0.79613 0.82641 0.79268 1.21357 1.19084 1.23049 0.93150 0.94987 0.90743 0.93640 0.92168 0.76741 0.79150 0.79176 0.91414 0.91198 0.93744 0.94935 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.12 37.16 0.34 -2.24 16 2 C -0.12 -2.17 5.40 -26.73 -0.14 -2.31 16 3 C 0.15 2.89 2.93 -66.94 -0.20 2.70 16 4 H 0.04 0.84 7.44 -51.93 -0.39 0.46 16 5 C 0.14 2.32 2.75 -66.09 -0.18 2.13 16 6 H 0.10 1.67 7.40 -51.93 -0.38 1.29 16 7 N -0.71 -9.98 5.20 -53.10 -0.28 -10.26 16 8 C 0.59 8.50 7.81 -12.52 -0.10 8.41 16 9 O -0.55 -9.65 16.63 5.27 0.09 -9.57 16 10 C -0.29 -3.29 6.13 -105.07 -0.64 -3.93 16 11 C 0.09 0.87 11.50 -16.98 -0.20 0.68 16 12 N -0.30 -3.12 12.63 30.86 0.39 -2.73 16 13 N -0.47 -3.59 7.29 30.85 0.22 -3.36 16 14 H 0.44 1.76 8.96 -182.73 -1.64 0.12 16 15 C 0.13 1.15 11.82 -16.56 -0.20 0.95 16 16 C -0.15 -2.65 6.77 -24.58 -0.17 -2.81 16 17 C 0.12 2.52 6.25 -2.53 -0.02 2.50 16 18 N -0.60 -13.68 2.47 -162.56 -0.40 -14.08 16 19 C -0.25 -6.75 9.56 -15.06 -0.14 -6.90 16 20 H 0.09 2.52 5.24 -52.49 -0.27 2.25 16 21 C 0.04 1.15 5.48 -17.43 -0.10 1.06 16 22 N -0.90 -27.01 13.97 55.49 0.78 -26.24 16 23 Si 0.89 22.07 25.12 -169.99 -4.27 17.80 16 24 H -0.29 -7.06 6.83 56.52 0.39 -6.68 16 25 H -0.27 -6.38 6.93 56.52 0.39 -5.99 16 26 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 27 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.54 5.54 -51.93 -0.29 1.26 16 30 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.40 4.70 7.27 -40.82 -0.30 4.41 16 33 H 0.19 1.46 7.50 -52.49 -0.39 1.07 16 34 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.07 1.26 7.97 -51.93 -0.41 0.84 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 1.02 4.20 -51.93 -0.22 0.80 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 316.06 15.07 4.76 4.76 Total: -1.00 -33.50 316.06 -6.84 -40.33 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.39 Total: 3.10 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.74 Total: 0.23 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.71 Total: -56.67 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.27 Total: 17.80 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.50 -6.84 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087510763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.107 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds