Wall clock time and date at job start Tue Mar 31 2020 00:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 H 1.09004 * 109.99558 * 311.50437 * 3 2 1 5 5 C 1.54334 * 109.98811 * 190.47005 * 3 2 1 6 6 H 1.08990 * 110.51620 * 336.97710 * 5 3 2 7 7 N 1.46498 * 110.84819 * 100.19757 * 5 3 2 8 8 C 1.34782 * 120.00271 * 200.14623 * 7 5 3 9 9 O 1.21604 * 119.99683 * 359.97438 * 8 7 5 10 10 C 1.47421 * 120.00219 * 179.97438 * 8 7 5 11 11 C 1.41294 * 126.41748 * 359.68767 * 10 8 7 12 12 N 1.30448 * 108.02098 * 179.85413 * 11 10 8 13 13 N 1.39930 * 108.89993 * 0.40590 * 12 11 10 14 14 H 0.96998 * 125.75460 * 179.73682 * 13 12 11 15 15 C 1.34262 * 108.49231 * 359.73952 * 13 12 11 16 16 C 1.55153 * 103.01853 * 218.66133 * 5 3 2 17 17 C 1.54913 * 101.58371 * 35.30948 * 16 5 3 18 18 N 1.47023 * 109.88140 * 72.60261 * 3 2 1 19 19 C 1.36933 * 125.65060 * 298.38933 * 18 3 2 20 20 H 1.07999 * 119.99450 * 46.92747 * 19 18 3 21 21 C 1.38808 * 120.00266 * 226.92697 * 19 18 3 22 22 N 1.31615 * 119.99860 * 192.98878 * 21 19 18 23 23 Si 1.86801 * 119.99950 * 12.98663 * 21 19 18 24 24 H 1.48498 * 109.47048 * 267.29772 * 23 21 19 25 25 H 1.48498 * 109.47148 * 27.29592 * 23 21 19 26 26 H 1.48503 * 109.46870 * 147.29832 * 23 21 19 27 27 H 1.09002 * 109.47252 * 38.58508 * 1 2 3 28 28 H 1.09004 * 109.46464 * 158.57866 * 1 2 3 29 29 H 1.08997 * 109.47332 * 278.57757 * 1 2 3 30 30 H 1.08995 * 109.47450 * 239.99999 * 2 1 3 31 31 H 1.09006 * 109.46711 * 119.99224 * 2 1 3 32 32 H 0.97009 * 120.00501 * 20.14486 * 7 5 3 33 33 H 1.07998 * 125.98319 * 359.97438 * 11 10 8 34 34 H 1.07997 * 126.29135 * 179.97438 * 15 13 12 35 35 H 1.08996 * 111.00845 * 277.23300 * 16 5 3 36 36 H 1.09003 * 110.99996 * 153.38430 * 16 5 3 37 37 H 1.08990 * 110.36642 * 204.15055 * 17 16 5 38 38 H 1.09002 * 110.45698 * 81.87214 * 17 16 5 39 39 H 0.97002 * 120.00217 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5242 2.0202 -0.7671 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5083 0.0054 7 7 3.8424 1.7956 -1.6626 8 6 5.0363 1.4798 -2.2025 9 8 5.8796 0.9205 -1.5281 10 6 5.3198 1.8123 -3.6104 11 6 4.4421 2.4518 -4.5144 12 7 5.0574 2.5708 -5.6584 13 7 6.3358 2.0131 -5.5457 14 1 6.9985 1.9673 -6.2525 15 6 6.4903 1.5519 -4.2943 16 6 4.0623 2.5905 0.6787 17 6 3.1226 2.4175 1.8981 18 7 1.8169 2.0518 1.3194 19 6 0.5985 2.2426 1.9146 20 1 -0.1239 1.4401 1.9352 21 6 0.2921 3.4674 2.4914 22 7 -0.7564 3.5800 3.2790 23 14 1.3679 4.9559 2.1499 24 1 2.4093 5.0659 3.2027 25 1 2.0186 4.8026 0.8240 26 1 0.5307 6.1825 2.1516 27 1 -0.3634 0.8033 -0.6409 28 1 -0.3632 -0.9567 -0.3754 29 1 -0.3634 0.1533 1.0161 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.1698 2.2421 -2.2005 33 1 3.4384 2.7854 -4.2957 34 1 7.3688 1.0662 -3.8960 35 1 3.9313 3.5708 0.2205 36 1 5.1026 2.4289 0.9611 37 1 3.0435 3.3529 2.4518 38 1 3.4853 1.6218 2.5487 39 1 -0.9704 4.4358 3.6824 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087510763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:15 Heat of formation + Delta-G solvation = 34.984546 kcal Electronic energy + Delta-G solvation = -21952.265926 eV Core-core repulsion = 18703.031469 eV Total energy + Delta-G solvation = -3249.234458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29272 -40.69561 -39.14326 -35.51789 -34.22163 -33.89905 -32.74241 -31.57172 -30.63720 -28.55300 -26.24043 -24.15746 -23.52943 -22.92608 -21.87337 -21.46982 -20.71868 -19.51132 -18.83405 -17.91734 -17.09827 -16.60243 -16.12498 -15.99464 -15.63207 -15.50274 -15.14877 -14.92684 -14.40900 -14.31833 -14.06904 -13.85122 -13.67705 -13.44358 -13.11887 -12.96773 -12.64260 -12.29205 -12.22463 -12.12183 -11.81543 -11.68382 -11.44646 -11.21791 -10.87257 -10.83001 -10.62270 -10.08505 -9.71191 -8.51418 -8.10945 -5.68521 0.59070 1.17137 1.34296 1.41561 1.53971 1.80582 2.31681 2.46061 2.50708 3.11703 3.39185 3.67897 3.78314 3.89848 3.95588 4.14781 4.19472 4.33953 4.42375 4.47468 4.52355 4.65100 4.71990 4.82502 4.89607 4.98029 5.08335 5.15158 5.25145 5.27135 5.35196 5.45807 5.57954 5.68890 6.01186 6.24836 6.40672 6.48806 6.70062 6.91118 7.35083 7.56999 8.28684 9.03646 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023007 B = 0.004755 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.709165 B = 5887.448166 C = 6202.776489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.152 3.848 4 H 0.049 0.951 5 C 0.154 3.846 6 H 0.092 0.908 7 N -0.705 5.705 8 C 0.597 3.403 9 O -0.588 6.588 10 C -0.318 4.318 11 C 0.088 3.912 12 N -0.322 5.322 13 N -0.450 5.450 14 H 0.460 0.540 15 C 0.149 3.851 16 C -0.136 4.136 17 C 0.112 3.888 18 N -0.613 5.613 19 C -0.236 4.236 20 H 0.066 0.934 21 C -0.015 4.015 22 N -0.952 5.952 23 Si 0.943 3.057 24 H -0.285 1.285 25 H -0.250 1.250 26 H -0.310 1.310 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.410 0.590 33 H 0.209 0.791 34 H 0.216 0.784 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.546 -3.788 -18.165 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.046 3.954 4 H 0.067 0.933 5 C 0.048 3.952 6 H 0.110 0.890 7 N -0.356 5.356 8 C 0.386 3.614 9 O -0.469 6.469 10 C -0.333 4.333 11 C -0.100 4.100 12 N -0.143 5.143 13 N -0.157 5.157 14 H 0.308 0.692 15 C -0.006 4.006 16 C -0.175 4.175 17 C -0.013 4.013 18 N -0.340 5.340 19 C -0.365 4.365 20 H 0.084 0.916 21 C -0.212 4.212 22 N -0.596 5.596 23 Si 0.772 3.228 24 H -0.212 1.212 25 H -0.173 1.173 26 H -0.239 1.239 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.247 0.753 33 H 0.226 0.774 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.850 -3.635 -18.796 24.228 hybrid contribution 0.007 0.867 0.900 1.250 sum 14.857 -2.768 -17.896 23.423 Atomic orbital electron populations 1.21757 0.96051 1.00487 1.01238 1.21841 0.96205 0.96665 1.01015 1.21427 0.92107 0.93693 0.88124 0.93320 1.21701 0.94825 0.98099 0.80602 0.88968 1.45645 1.16613 1.61236 1.12061 1.17497 0.81178 0.76944 0.85741 1.90743 1.47238 1.45121 1.63807 1.20266 0.98338 1.19053 0.95623 1.24466 1.00707 0.95621 0.89254 1.77140 0.92618 1.21334 1.23217 1.46262 1.13584 1.44734 1.11104 0.69199 1.23422 0.99244 0.93341 0.84599 1.23101 0.99185 0.99083 0.96121 1.21970 0.86531 0.97507 0.95246 1.44583 1.00929 1.72955 1.15572 1.18687 0.91697 0.95489 1.30634 0.91646 1.26316 0.96835 1.00192 0.97815 1.69904 1.30489 1.25786 1.33451 0.85784 0.77943 0.79244 0.79784 1.21226 1.17342 1.23910 0.93541 0.92351 0.94311 0.90666 0.93365 0.75302 0.77407 0.76793 0.91445 0.89829 0.95416 0.94658 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.12 71.98 0.66 -4.20 16 2 C -0.12 -3.93 5.40 30.60 0.17 -3.76 16 3 C 0.15 5.47 2.93 45.35 0.13 5.60 16 4 H 0.05 1.74 7.44 -2.38 -0.02 1.72 16 5 C 0.15 4.80 2.75 46.18 0.13 4.93 16 6 H 0.09 3.02 7.40 -2.39 -0.02 3.00 16 7 N -0.71 -17.83 5.20 -440.17 -2.29 -20.12 16 8 C 0.60 15.55 7.81 86.66 0.68 16.23 16 9 O -0.59 -19.16 16.63 -4.04 -0.07 -19.23 16 10 C -0.32 -6.32 6.13 -20.15 -0.12 -6.45 16 11 C 0.09 1.54 11.50 85.65 0.99 2.52 16 12 N -0.32 -5.84 12.63 -56.27 -0.71 -6.55 16 13 N -0.45 -5.46 7.29 -56.31 -0.41 -5.87 16 14 H 0.46 2.12 8.96 -213.43 -1.91 0.21 16 15 C 0.15 2.12 11.82 84.28 1.00 3.12 16 16 C -0.14 -4.62 6.77 31.99 0.22 -4.40 16 17 C 0.11 4.64 6.25 86.86 0.54 5.19 16 18 N -0.61 -27.71 2.47 -668.23 -1.65 -29.36 16 19 C -0.24 -12.83 9.56 84.03 0.80 -12.03 16 20 H 0.07 3.85 5.24 -2.91 -0.02 3.84 16 21 C -0.01 -0.85 5.48 84.86 0.46 -0.38 16 22 N -0.95 -58.72 13.97 21.65 0.30 -58.42 16 23 Si 0.94 45.94 25.12 68.60 1.72 47.67 16 24 H -0.28 -13.68 6.83 99.48 0.68 -13.00 16 25 H -0.25 -11.31 6.93 99.48 0.69 -10.62 16 26 H -0.31 -15.39 7.11 99.48 0.71 -14.69 16 27 H 0.05 1.64 7.79 -2.39 -0.02 1.62 16 28 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.63 5.54 -2.39 -0.01 1.62 16 30 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.41 8.44 7.27 -92.70 -0.67 7.76 16 33 H 0.21 2.59 7.50 -2.91 -0.02 2.56 16 34 H 0.22 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.07 2.31 7.97 -2.39 -0.02 2.29 16 36 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.03 1.25 4.20 -2.39 -0.01 1.24 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.90 316.06 1.01 -71.89 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -1.54 Total: 13.62 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.64 Total: 6.37 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -4.75 Total: -120.32 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.07 Total: -19.23 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.72 Total: 47.67 kcal Total: -72.90 1.01 -71.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087510763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.874 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds