Wall clock time and date at job start Mon Mar 30 2020 23:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41630 * 2 1 4 4 C 1.33317 * 109.68195 * 180.02562 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99955 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47174 * 180.02562 * 9 8 6 11 11 C 1.53776 * 113.61120 * 274.13807 * 10 9 8 12 12 C 1.53961 * 87.01928 * 220.04453 * 11 10 9 13 13 N 1.46496 * 113.53800 * 270.81008 * 12 11 10 14 14 C 1.36933 * 120.00219 * 252.49537 * 13 12 11 15 15 H 1.08002 * 120.00012 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00127 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99979 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47112 * 90.00139 * 18 16 14 20 20 H 1.48503 * 109.46740 * 209.99698 * 18 16 14 21 21 H 1.48493 * 109.47312 * 329.99709 * 18 16 14 22 22 C 1.53779 * 113.61788 * 176.52894 * 10 9 8 23 23 N 1.34490 * 125.41979 * 179.97438 * 2 1 3 24 24 H 0.97005 * 126.46844 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.47441 * 89.97361 * 1 2 3 26 26 H 1.08999 * 109.47475 * 209.97685 * 1 2 3 27 27 H 1.09006 * 109.46807 * 329.97026 * 1 2 3 28 28 H 1.08003 * 126.10965 * 179.97438 * 4 3 2 29 29 H 0.96990 * 120.00214 * 0.02562 * 8 6 5 30 30 H 1.09007 * 109.47239 * 300.00172 * 9 8 6 31 31 H 1.08992 * 109.47491 * 60.00012 * 9 8 6 32 32 H 1.08998 * 112.84821 * 45.32791 * 10 9 8 33 33 H 1.08996 * 113.61911 * 334.56447 * 11 10 9 34 34 H 1.08997 * 113.61897 * 105.46944 * 11 10 9 35 35 H 1.08996 * 113.74041 * 139.94094 * 12 11 10 36 36 H 0.97000 * 119.99995 * 72.49221 * 13 12 11 37 37 H 0.97003 * 119.99833 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.61500 * 254.52970 * 22 10 9 39 39 H 1.09000 * 113.61122 * 25.42860 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5975 -0.6608 -0.0015 6 6 4.8028 -1.4983 -0.0029 7 8 5.9038 -0.9800 -0.0029 8 7 4.6902 -2.8413 -0.0043 9 6 5.8933 -3.6772 -0.0062 10 6 5.4891 -5.1529 -0.0081 11 6 5.2292 -5.7221 1.3966 12 6 5.9420 -7.0017 0.9223 13 7 5.0413 -7.9787 0.3057 14 6 4.7178 -9.1291 0.9743 15 1 5.1271 -9.3164 1.9560 16 6 3.8639 -10.0547 0.3902 17 7 3.5534 -11.1607 1.0326 18 14 3.1567 -9.7311 -1.3082 19 1 4.0671 -10.2920 -2.3386 20 1 1.8241 -10.3769 -1.4207 21 1 3.0164 -8.2674 -1.5154 22 6 6.6827 -6.1185 -0.0955 23 7 2.2865 -1.0960 0.0005 24 1 1.9849 -2.0180 0.0013 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3978 1.3722 -0.0011 29 1 3.8127 -3.2544 -0.0047 30 1 6.4842 -3.4616 -0.8965 31 1 6.4857 -3.4636 0.8834 32 1 4.6958 -5.3735 -0.7222 33 1 5.7614 -5.1934 2.1874 34 1 4.1724 -5.8673 1.6203 35 1 6.5958 -7.4441 1.6739 36 1 4.6739 -7.8107 -0.5762 37 1 2.9570 -11.8076 0.6243 38 1 6.7976 -6.5832 -1.0748 39 1 7.6131 -5.6983 0.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090950848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:59 Heat of formation + Delta-G solvation = 48.503864 kcal Electronic energy + Delta-G solvation = -20763.964658 eV Core-core repulsion = 17515.316442 eV Total energy + Delta-G solvation = -3248.648216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54150 -39.73697 -38.62183 -34.98783 -33.47650 -32.90912 -32.23793 -30.75978 -28.48897 -27.08325 -25.28917 -23.84103 -22.87730 -21.89991 -21.16268 -20.63831 -19.19538 -18.37851 -17.74260 -16.34648 -16.17644 -16.08692 -15.30942 -14.96782 -14.52344 -14.34950 -14.23427 -13.74789 -13.64212 -13.60282 -13.07477 -12.89045 -12.83648 -12.59316 -12.15749 -11.69835 -11.46903 -11.00709 -10.76242 -10.61898 -10.53091 -10.44116 -10.27977 -10.05749 -9.76656 -9.63935 -9.31334 -9.00915 -8.77957 -7.40041 -5.88361 -3.25057 0.98717 2.47239 2.49136 2.92061 3.11341 3.24701 3.29142 3.35175 3.97375 4.44790 4.46966 4.63788 4.81076 4.81719 4.92237 4.97257 5.03694 5.19253 5.29788 5.32672 5.38075 5.42884 5.48080 5.65144 5.73947 5.80354 6.02628 6.10779 6.14287 6.23252 6.37821 6.50202 6.62006 6.78372 6.80098 7.18529 7.58134 7.89236 7.90391 8.31257 9.08614 9.80683 9.99673 11.29716 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.003547 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.898285 B = 7892.784427 C = 8897.937085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.239 3.761 3 N -0.497 5.497 4 C 0.071 3.929 5 C -0.090 4.090 6 C 0.593 3.407 7 O -0.528 6.528 8 N -0.724 5.724 9 C 0.131 3.869 10 C -0.125 4.125 11 C -0.167 4.167 12 C 0.173 3.827 13 N -0.730 5.730 14 C -0.249 4.249 15 H 0.092 0.908 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.279 1.279 22 C -0.148 4.148 23 N -0.552 5.552 24 H 0.422 0.578 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.184 0.816 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.361 0.639 37 H 0.261 0.739 38 H 0.068 0.932 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 20.593 -3.059 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 N -0.217 5.217 4 C -0.083 4.083 5 C -0.206 4.206 6 C 0.379 3.621 7 O -0.404 6.404 8 N -0.374 5.374 9 C 0.009 3.991 10 C -0.144 4.144 11 C -0.208 4.208 12 C 0.061 3.939 13 N -0.370 5.370 14 C -0.378 4.378 15 H 0.110 0.890 16 C -0.190 4.190 17 N -0.578 5.578 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.187 4.187 23 N -0.157 5.157 24 H 0.261 0.739 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.201 0.799 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.194 0.806 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.966 21.512 -2.887 21.907 hybrid contribution -0.922 -1.378 -1.256 2.080 sum -3.888 20.135 -4.143 20.921 Atomic orbital electron populations 1.20333 0.84131 1.04728 1.04183 1.23505 0.95960 0.81517 1.01521 1.70218 1.02135 1.28199 1.21144 1.22671 0.94766 0.91239 0.99611 1.21214 0.83710 0.96102 1.19571 1.16859 0.86968 0.81572 0.76717 1.90854 1.25847 1.73275 1.50474 1.45961 1.10609 1.05602 1.75224 1.21536 0.86203 0.89072 1.02321 1.22768 1.00084 0.91588 0.99929 1.23898 1.02202 1.00276 0.94455 1.21038 0.91138 0.87813 0.93907 1.42518 1.54926 1.20600 1.18955 1.19117 1.23473 0.93911 1.01338 0.88985 1.24687 0.99810 0.96472 0.98013 1.69696 1.39708 1.10295 1.38094 0.86560 0.78924 0.77252 0.85756 1.20933 1.21635 1.20573 1.23456 0.96636 0.97231 1.01404 1.43281 1.06122 1.10358 1.55963 0.73882 0.89494 0.90220 0.88573 0.79850 0.77140 0.91383 0.90966 0.89326 0.90839 0.91428 0.90936 0.80560 0.92916 0.91331 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.24 2.10 8.12 -155.61 -1.26 0.84 16 3 N -0.50 -5.74 11.20 -10.58 -0.12 -5.86 16 4 C 0.07 0.83 11.66 -17.48 -0.20 0.63 16 5 C -0.09 -1.00 7.08 -82.14 -0.58 -1.58 16 6 C 0.59 7.47 7.79 -12.81 -0.10 7.37 16 7 O -0.53 -8.38 16.90 5.20 0.09 -8.29 16 8 N -0.72 -7.83 5.55 -61.59 -0.34 -8.18 16 9 C 0.13 1.54 5.50 -4.04 -0.02 1.52 16 10 C -0.12 -1.61 3.62 -89.81 -0.33 -1.93 16 11 C -0.17 -2.47 7.44 -25.83 -0.19 -2.66 16 12 C 0.17 3.06 4.57 -67.03 -0.31 2.75 16 13 N -0.73 -16.22 5.11 -52.55 -0.27 -16.49 16 14 C -0.25 -6.73 10.45 -15.06 -0.16 -6.89 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 16 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 17 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 18 Si 0.88 21.15 27.74 -169.99 -4.71 16.43 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.17 6.52 56.52 0.37 -5.81 16 22 C -0.15 -2.07 7.39 -25.92 -0.19 -2.26 16 23 N -0.55 -4.54 6.07 -7.02 -0.04 -4.58 16 24 H 0.42 2.25 8.32 -40.82 -0.34 1.91 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.18 1.93 8.06 -52.48 -0.42 1.50 16 29 H 0.40 3.46 7.72 -40.82 -0.31 3.14 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.88 7.88 -51.93 -0.41 0.48 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.98 7.92 -51.93 -0.41 0.57 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.36 7.85 5.76 -40.82 -0.24 7.62 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -33.99 332.11 -8.20 -42.19 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.52 Total: 9.52 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.06 Total: -2.11 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: 0.00 Total: -62.74 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.43 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.99 -8.20 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090950848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.697 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds