Wall clock time and date at job start Mon Mar 30 2020 23:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41630 * 2 1 4 4 C 1.33317 * 109.68195 * 180.02562 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99955 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99697 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47174 * 180.02562 * 9 8 6 11 11 C 1.53776 * 113.61120 * 274.13807 * 10 9 8 12 12 C 1.53961 * 87.01928 * 220.04453 * 11 10 9 13 13 N 1.46496 * 113.53800 * 270.81008 * 12 11 10 14 14 C 1.36933 * 120.00219 * 252.49537 * 13 12 11 15 15 H 1.08002 * 120.00012 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00127 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99979 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99876 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47112 * 90.00139 * 18 16 14 20 20 H 1.48503 * 109.46740 * 209.99698 * 18 16 14 21 21 H 1.48493 * 109.47312 * 329.99709 * 18 16 14 22 22 C 1.53779 * 113.61788 * 176.52894 * 10 9 8 23 23 N 1.34490 * 125.41979 * 179.97438 * 2 1 3 24 24 H 0.97005 * 126.46844 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.47441 * 89.97361 * 1 2 3 26 26 H 1.08999 * 109.47475 * 209.97685 * 1 2 3 27 27 H 1.09006 * 109.46807 * 329.97026 * 1 2 3 28 28 H 1.08003 * 126.10965 * 179.97438 * 4 3 2 29 29 H 0.96990 * 120.00214 * 0.02562 * 8 6 5 30 30 H 1.09007 * 109.47239 * 300.00172 * 9 8 6 31 31 H 1.08992 * 109.47491 * 60.00012 * 9 8 6 32 32 H 1.08998 * 112.84821 * 45.32791 * 10 9 8 33 33 H 1.08996 * 113.61911 * 334.56447 * 11 10 9 34 34 H 1.08997 * 113.61897 * 105.46944 * 11 10 9 35 35 H 1.08996 * 113.74041 * 139.94094 * 12 11 10 36 36 H 0.97000 * 119.99995 * 72.49221 * 13 12 11 37 37 H 0.97003 * 119.99833 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.61500 * 254.52970 * 22 10 9 39 39 H 1.09000 * 113.61122 * 25.42860 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5975 -0.6608 -0.0015 6 6 4.8028 -1.4983 -0.0029 7 8 5.9038 -0.9800 -0.0029 8 7 4.6902 -2.8413 -0.0043 9 6 5.8933 -3.6772 -0.0062 10 6 5.4891 -5.1529 -0.0081 11 6 5.2292 -5.7221 1.3966 12 6 5.9420 -7.0017 0.9223 13 7 5.0413 -7.9787 0.3057 14 6 4.7178 -9.1291 0.9743 15 1 5.1271 -9.3164 1.9560 16 6 3.8639 -10.0547 0.3902 17 7 3.5534 -11.1607 1.0326 18 14 3.1567 -9.7311 -1.3082 19 1 4.0671 -10.2920 -2.3386 20 1 1.8241 -10.3769 -1.4207 21 1 3.0164 -8.2674 -1.5154 22 6 6.6827 -6.1185 -0.0955 23 7 2.2865 -1.0960 0.0005 24 1 1.9849 -2.0180 0.0013 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.3978 1.3722 -0.0011 29 1 3.8127 -3.2544 -0.0047 30 1 6.4842 -3.4616 -0.8965 31 1 6.4857 -3.4636 0.8834 32 1 4.6958 -5.3735 -0.7222 33 1 5.7614 -5.1934 2.1874 34 1 4.1724 -5.8673 1.6203 35 1 6.5958 -7.4441 1.6739 36 1 4.6739 -7.8107 -0.5762 37 1 2.9570 -11.8076 0.6243 38 1 6.7976 -6.5832 -1.0748 39 1 7.6131 -5.6983 0.2864 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090950848.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:59 Heat of formation + Delta-G solvation = 23.301022 kcal Electronic energy + Delta-G solvation = -20765.057536 eV Core-core repulsion = 17515.316442 eV Total energy + Delta-G solvation = -3249.741093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.29059 -40.79488 -39.81820 -36.19911 -35.10712 -33.77105 -32.93379 -32.55942 -29.45697 -27.96398 -26.48403 -25.50633 -24.01326 -23.05964 -21.94364 -21.48994 -20.35437 -19.64448 -19.42844 -17.28994 -17.09057 -16.90736 -16.64683 -16.24417 -15.89774 -15.51158 -15.13971 -14.94449 -14.80247 -14.62619 -14.28789 -14.12036 -13.49314 -13.36981 -13.24575 -13.12482 -13.03909 -12.71982 -12.20347 -11.90322 -11.76280 -11.64442 -11.50585 -11.28106 -11.15963 -10.98576 -10.84172 -10.28045 -9.55700 -9.31172 -8.03772 -5.37835 0.17420 1.35331 1.41104 1.47829 1.71157 1.76716 2.06556 2.21675 2.47050 3.26508 3.36718 3.49520 3.67719 3.71302 3.83641 3.95870 4.06707 4.25152 4.26798 4.33326 4.55699 4.67850 4.73581 4.74620 4.82334 4.91928 4.95671 5.05913 5.10249 5.16574 5.28502 5.40413 5.44721 5.51687 5.79649 6.19693 6.21493 6.34867 6.83544 6.98702 7.06761 7.83257 8.02038 9.17804 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.003547 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.898285 B = 7892.784427 C = 8897.937085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.248 3.752 3 N -0.529 5.529 4 C 0.057 3.943 5 C -0.102 4.102 6 C 0.595 3.405 7 O -0.566 6.566 8 N -0.713 5.713 9 C 0.138 3.862 10 C -0.105 4.105 11 C -0.155 4.155 12 C 0.144 3.856 13 N -0.733 5.733 14 C -0.234 4.234 15 H 0.055 0.945 16 C -0.065 4.065 17 N -0.985 5.985 18 Si 0.957 3.043 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.246 1.246 22 C -0.133 4.133 23 N -0.540 5.540 24 H 0.437 0.563 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.184 0.816 29 H 0.407 0.593 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.367 0.633 37 H 0.258 0.742 38 H 0.068 0.932 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 22.250 -4.546 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.016 4.016 3 N -0.250 5.250 4 C -0.097 4.097 5 C -0.218 4.218 6 C 0.383 3.617 7 O -0.446 6.446 8 N -0.364 5.364 9 C 0.015 3.985 10 C -0.124 4.124 11 C -0.196 4.196 12 C 0.035 3.965 13 N -0.375 5.375 14 C -0.365 4.365 15 H 0.073 0.927 16 C -0.257 4.257 17 N -0.635 5.635 18 Si 0.784 3.216 19 H -0.207 1.207 20 H -0.224 1.224 21 H -0.171 1.171 22 C -0.172 4.172 23 N -0.146 5.146 24 H 0.279 0.721 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.201 0.799 29 H 0.243 0.757 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.201 0.799 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.953 23.202 -4.373 23.939 hybrid contribution -0.575 -1.869 -0.671 2.068 sum -4.528 21.332 -5.044 22.383 Atomic orbital electron populations 1.20551 0.81154 1.06045 1.05534 1.24267 0.97403 0.80927 0.99042 1.70226 1.02277 1.29746 1.22766 1.22832 0.95214 0.91832 0.99845 1.20939 0.84361 0.95702 1.20801 1.16975 0.86824 0.81922 0.76024 1.90832 1.27323 1.73999 1.52418 1.45828 1.11075 1.05038 1.74415 1.21406 0.86439 0.88149 1.02483 1.22582 0.99445 0.92031 0.98312 1.23745 1.01130 0.98382 0.96312 1.21382 0.91554 0.88231 0.95328 1.42424 1.55918 1.20088 1.19082 1.19065 1.22033 0.95356 1.00024 0.92660 1.25539 1.01023 0.96353 1.02741 1.69892 1.41318 1.11848 1.40465 0.85387 0.77346 0.78897 0.79968 1.20691 1.22369 1.17069 1.23361 0.97731 0.96024 1.00111 1.43199 1.04952 1.11169 1.55314 0.72145 0.87974 0.87879 0.88279 0.79934 0.75730 0.91089 0.91077 0.89054 0.89138 0.92719 0.92513 0.79925 0.93320 0.91300 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.51 71.24 0.75 0.27 16 2 C 0.25 3.80 8.12 138.20 1.12 4.93 16 3 N -0.53 -11.65 11.20 -187.39 -2.10 -13.75 16 4 C 0.06 1.30 11.66 84.10 0.98 2.28 16 5 C -0.10 -2.11 7.08 40.01 0.28 -1.83 16 6 C 0.60 14.08 7.79 86.47 0.67 14.76 16 7 O -0.57 -17.52 16.90 -4.29 -0.07 -17.59 16 8 N -0.71 -13.54 5.55 -466.99 -2.59 -16.14 16 9 C 0.14 2.83 5.50 86.38 0.47 3.30 16 10 C -0.10 -2.36 3.62 -10.27 -0.04 -2.39 16 11 C -0.16 -4.23 7.44 31.18 0.23 -3.99 16 12 C 0.14 4.92 4.57 45.58 0.21 5.12 16 13 N -0.73 -31.75 5.11 -320.17 -1.64 -33.39 16 14 C -0.23 -12.83 10.45 84.03 0.88 -11.95 16 15 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 17 N -0.98 -61.81 13.97 21.65 0.30 -61.51 16 18 Si 0.96 43.19 27.74 68.60 1.90 45.09 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.25 -9.64 6.52 99.48 0.65 -8.99 16 22 C -0.13 -3.33 7.39 31.12 0.23 -3.10 16 23 N -0.54 -7.56 6.07 -176.11 -1.07 -8.63 16 24 H 0.44 3.27 8.32 -92.70 -0.77 2.49 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.10 0.20 8.14 -2.39 -0.02 0.19 16 27 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.18 3.93 8.06 -2.91 -0.02 3.90 16 29 H 0.41 5.80 7.72 -92.72 -0.72 5.08 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.53 7.88 -2.39 -0.02 1.51 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.18 7.92 -2.39 -0.02 2.16 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.37 14.98 5.76 -92.71 -0.53 14.45 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -75.58 332.11 0.01 -75.58 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: -0.99 Total: 26.20 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 6.26 Total: 4.14 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -7.10 Total: -133.41 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.07 Total: -17.59 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.90 Total: 45.09 kcal Total: -75.58 0.01 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090950848.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.877 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds