Wall clock time and date at job start Tue Mar 31 2020 00:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30519 * 126.34670 * 2 1 4 4 N 1.28599 * 109.67488 * 179.97438 * 3 2 1 5 5 C 1.30519 * 109.67286 * 359.97438 * 4 3 2 6 6 C 1.50694 * 126.34731 * 179.97438 * 5 4 3 7 7 N 1.46502 * 109.46771 * 90.02907 * 6 5 4 8 8 C 1.34780 * 119.99957 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99872 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00124 * 179.97438 * 8 7 6 11 11 C 1.53005 * 109.47112 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47112 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99626 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99979 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00109 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99948 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46848 * 90.00353 * 16 14 12 18 18 H 1.48499 * 109.46961 * 209.99982 * 16 14 12 19 19 H 1.48495 * 109.46890 * 329.99983 * 16 14 12 20 20 N 1.35497 * 107.30644 * 0.23131 * 5 4 3 21 21 C 1.46501 * 126.98186 * 179.77379 * 20 5 4 22 22 C 1.52995 * 117.49801 * 311.17374 * 21 20 5 23 23 C 1.52999 * 117.50007 * 242.50962 * 21 20 5 24 24 H 1.09004 * 109.46887 * 95.13860 * 1 2 3 25 25 H 1.08993 * 109.47133 * 215.13845 * 1 2 3 26 26 H 1.08994 * 109.47428 * 335.14108 * 1 2 3 27 27 H 1.08998 * 109.47334 * 330.02878 * 6 5 4 28 28 H 1.09004 * 109.47309 * 210.02496 * 6 5 4 29 29 H 0.97000 * 120.00637 * 359.97438 * 7 6 5 30 30 H 1.08994 * 109.46793 * 299.99655 * 10 8 7 31 31 H 1.08998 * 109.47085 * 59.99695 * 10 8 7 32 32 H 1.09005 * 109.46549 * 299.99811 * 11 10 8 33 33 H 1.08997 * 109.46995 * 59.99569 * 11 10 8 34 34 H 0.97000 * 120.00319 * 179.97438 * 15 14 12 35 35 H 1.09002 * 115.54996 * 96.83664 * 21 20 5 36 36 H 1.09005 * 117.49643 * 359.97438 * 22 21 20 37 37 H 1.08996 * 117.50438 * 145.01979 * 22 21 20 38 38 H 1.08997 * 117.49833 * 214.98070 * 23 21 20 39 39 H 1.09001 * 117.49492 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6823 0.0005 5 6 3.5808 -0.6211 0.0015 6 6 4.8397 -1.4494 0.0018 7 7 5.2475 -1.7174 1.3832 8 6 6.3547 -2.4453 1.6298 9 8 7.0131 -2.8789 0.7081 10 6 6.7745 -2.7205 3.0507 11 6 8.0533 -3.5606 3.0511 12 6 8.4727 -3.8363 4.4720 13 1 7.8861 -3.4506 5.2927 14 6 9.6053 -4.5810 4.7243 15 7 9.9716 -4.8212 5.9643 16 14 10.6194 -5.2488 3.3047 17 1 11.6575 -4.2560 2.9279 18 1 11.2735 -6.5166 3.7170 19 1 9.7334 -5.5047 2.1408 20 7 2.3101 -1.0913 -0.0037 21 6 1.8897 -2.4947 -0.0095 22 6 2.5459 -3.4245 -1.0321 23 6 1.0904 -2.9879 -1.2173 24 1 -0.3633 -0.0920 -1.0236 25 1 -0.3633 -0.8403 0.5914 26 1 -0.3634 0.9324 0.4320 27 1 5.6324 -0.9059 -0.5121 28 1 4.6540 -2.3928 -0.5117 29 1 4.7211 -1.3704 2.1203 30 1 6.9599 -1.7770 3.5639 31 1 5.9819 -3.2642 3.5649 32 1 7.8682 -4.5042 2.5377 33 1 8.8455 -3.0165 2.5370 34 1 10.7682 -5.3455 6.1418 35 1 1.6399 -2.9146 0.9649 36 1 3.2900 -2.9919 -1.7009 37 1 2.7273 -4.4562 -0.7308 38 1 0.3149 -3.7324 -1.0376 39 1 0.8770 -2.2680 -2.0074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117658763.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:12 Heat of formation + Delta-G solvation = 37.043290 kcal Electronic energy + Delta-G solvation = -21072.117973 eV Core-core repulsion = 17822.972789 eV Total energy + Delta-G solvation = -3249.145184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.35716 -40.74369 -38.70994 -36.32957 -35.51673 -34.11820 -33.53809 -33.05991 -30.01990 -28.23571 -26.86994 -24.77183 -23.73844 -23.08309 -22.10649 -21.54664 -21.16605 -19.25507 -18.56043 -17.82939 -17.34478 -17.04359 -16.75207 -16.22495 -15.84298 -15.51045 -15.23456 -14.94117 -14.69997 -14.43362 -14.36266 -13.79369 -13.69660 -13.39503 -13.32052 -12.89232 -12.67447 -12.56670 -12.32543 -12.11899 -11.97433 -11.96035 -11.75538 -11.39712 -11.27700 -11.10428 -10.96344 -10.77405 -10.26065 -10.21925 -8.30531 -6.33830 0.50635 1.23781 1.35464 1.36990 1.51600 1.57076 1.61420 2.28302 2.36184 2.36781 2.96156 3.05402 3.28476 3.53382 3.58923 3.77146 3.84995 3.96052 4.18059 4.34704 4.43722 4.48238 4.59634 4.64496 4.67217 4.69905 4.78933 4.86755 4.92299 4.98151 5.03770 5.11302 5.18592 5.37595 5.45581 5.61690 5.81539 6.23590 6.40047 6.72797 7.16914 7.31659 7.55511 8.85236 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.003335 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.849011 B = 8392.584593 C = 8659.337390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.194 3.806 3 N -0.341 5.341 4 N -0.314 5.314 5 C 0.159 3.841 6 C 0.212 3.788 7 N -0.716 5.716 8 C 0.525 3.475 9 O -0.575 6.575 10 C -0.116 4.116 11 C 0.005 3.995 12 C -0.530 4.530 13 H 0.048 0.952 14 C 0.012 3.988 15 N -0.945 5.945 16 Si 0.940 3.060 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.256 1.256 20 N -0.433 5.433 21 C 0.024 3.976 22 C -0.176 4.176 23 C -0.136 4.136 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.412 0.588 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.016 0.984 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.159 0.841 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.645 3.394 -15.673 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 N -0.181 5.181 4 N -0.155 5.155 5 C -0.109 4.109 6 C 0.087 3.913 7 N -0.370 5.370 8 C 0.313 3.687 9 O -0.454 6.454 10 C -0.155 4.155 11 C -0.033 4.033 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.586 5.586 16 Si 0.764 3.236 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.180 1.180 20 N -0.124 5.124 21 C -0.079 4.079 22 C -0.213 4.213 23 C -0.174 4.174 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.247 0.753 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.111 0.889 37 H 0.148 0.852 38 H 0.163 0.837 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.631 4.441 -16.247 29.839 hybrid contribution 0.493 -1.152 0.205 1.270 sum -24.138 3.288 -16.042 29.169 Atomic orbital electron populations 1.20484 0.80185 1.06084 1.05575 1.25721 0.98791 0.81793 1.01027 1.74252 0.96492 1.25711 1.21687 1.74227 1.13328 1.09335 1.18573 1.24502 0.87656 0.91933 1.06852 1.19487 0.88862 0.97813 0.85155 1.45856 1.27991 1.55141 1.08036 1.21127 0.79105 0.76254 0.92186 1.90659 1.54452 1.52646 1.47633 1.21497 0.99871 1.02697 0.91468 1.19230 0.93740 0.95518 0.94772 1.21434 1.10026 1.32837 0.92480 0.93348 1.25830 0.98634 0.96177 0.97897 1.70029 1.26435 1.41296 1.20828 0.85805 0.79261 0.78250 0.80266 1.19615 1.20431 1.18041 1.45707 1.05196 1.08461 1.52988 1.22505 1.09138 0.77017 0.99213 1.23532 0.97439 1.00542 0.99801 1.23539 0.95064 1.02867 0.95906 0.87731 0.87698 0.88311 0.89504 0.88055 0.75250 0.88332 0.87604 0.96568 0.97255 0.92395 0.82335 0.88932 0.85171 0.83663 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.20 71.24 0.73 0.23 16 2 C 0.19 3.60 8.01 137.98 1.11 4.70 16 3 N -0.34 -9.42 12.21 -50.15 -0.61 -10.03 16 4 N -0.31 -9.44 12.21 -50.16 -0.61 -10.05 16 5 C 0.16 3.76 7.29 137.98 1.01 4.77 16 6 C 0.21 5.08 6.01 85.63 0.51 5.59 16 7 N -0.72 -18.34 5.55 -466.78 -2.59 -20.93 16 8 C 0.52 17.84 7.83 87.66 0.69 18.53 16 9 O -0.58 -23.93 15.98 -3.05 -0.05 -23.98 16 10 C -0.12 -4.26 5.64 29.85 0.17 -4.09 16 11 C 0.01 0.26 3.33 29.85 0.10 0.36 16 12 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 13 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 14 C 0.01 0.72 5.47 84.65 0.46 1.18 16 15 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 16 Si 0.94 46.25 27.47 68.60 1.88 48.14 16 17 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.26 -12.33 6.54 99.48 0.65 -11.68 16 20 N -0.43 -7.45 3.03 -481.75 -1.46 -8.91 16 21 C 0.02 0.23 6.16 44.99 0.28 0.51 16 22 C -0.18 -1.60 8.95 30.62 0.27 -1.32 16 23 C -0.14 -0.62 10.44 30.62 0.32 -0.30 16 24 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.10 0.32 8.07 -2.39 -0.02 0.30 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.10 2.16 5.39 -2.38 -0.01 2.14 16 29 H 0.41 9.02 8.46 -92.71 -0.78 8.24 16 30 H 0.10 3.42 8.14 -2.39 -0.02 3.41 16 31 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.02 0.80 7.15 -2.38 -0.02 0.79 16 33 H 0.01 0.46 7.53 -2.39 -0.02 0.44 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.15 6.99 -2.38 -0.02 1.14 16 37 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.49 333.34 2.97 -77.52 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.23 Total: 7.02 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.89 Total: 0.06 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -4.98 Total: -108.75 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.14 kcal Total: -80.49 2.97 -77.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117658763.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.561 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds