Wall clock time and date at job start Tue Mar 31 2020 00:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30834 * 125.96325 * 2 1 4 4 C 1.33242 * 109.83168 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.53111 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46617 * 90.00348 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.62757 * 359.72633 * 8 6 5 10 10 C 1.53186 * 108.77547 * 233.58511 * 9 8 6 11 11 C 1.53042 * 109.31424 * 305.36982 * 10 9 8 12 12 C 1.53042 * 109.54144 * 61.36113 * 11 10 9 13 13 H 1.09001 * 109.49569 * 58.58712 * 12 11 10 14 14 C 1.50699 * 109.49872 * 178.68339 * 12 11 10 15 15 H 1.07995 * 119.99995 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99595 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00489 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99698 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47016 * 60.00495 * 18 16 14 20 20 H 1.48503 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47177 * 300.00454 * 18 16 14 22 22 C 1.46918 * 120.63039 * 179.44612 * 8 6 5 23 23 N 1.30720 * 108.94339 * 0.27059 * 4 3 2 24 24 N 1.34434 * 125.96063 * 179.97438 * 2 1 3 25 25 H 0.96997 * 126.81974 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.46903 * 90.01466 * 1 2 3 27 27 H 1.08995 * 109.47439 * 210.02369 * 1 2 3 28 28 H 1.09000 * 109.46641 * 330.02411 * 1 2 3 29 29 H 1.09001 * 109.46798 * 330.01239 * 5 4 3 30 30 H 1.08993 * 109.47546 * 210.00791 * 5 4 3 31 31 H 1.08994 * 109.58636 * 353.37407 * 9 8 6 32 32 H 1.09001 * 109.57902 * 113.79870 * 9 8 6 33 33 H 1.08998 * 109.50144 * 65.31586 * 10 9 8 34 34 H 1.08996 * 109.49951 * 185.41700 * 10 9 8 35 35 H 1.08993 * 109.46497 * 181.38716 * 11 10 9 36 36 H 1.09006 * 109.45814 * 301.34704 * 11 10 9 37 37 H 0.96999 * 120.00185 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.59003 * 246.20126 * 22 8 6 39 39 H 1.08997 * 109.58851 * 6.63324 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6235 0.0002 6 6 5.1309 1.9360 1.4209 7 8 4.5095 1.4516 2.3429 8 7 6.1700 2.7585 1.6669 9 6 6.9321 3.3533 0.5605 10 6 8.4183 3.0414 0.7617 11 6 8.8517 3.5165 2.1505 12 6 8.0521 2.7688 3.2200 13 1 8.2161 1.6965 3.1135 14 6 8.5023 3.2139 4.5875 15 1 9.2806 3.9562 4.6847 16 6 7.9196 2.6741 5.7146 17 7 6.9715 1.7706 5.5962 18 14 8.4772 3.2264 7.4098 19 1 8.2513 4.6870 7.5538 20 1 7.7010 2.5004 8.4470 21 1 9.9228 2.9303 7.5763 22 6 6.5581 3.0821 3.0465 23 7 3.6194 -0.6169 -0.0049 24 7 2.2964 -1.0881 0.0005 25 1 2.0093 -2.0146 0.0006 26 1 -0.3633 -0.0003 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3632 0.8902 0.5135 29 1 4.4703 2.5467 -0.5142 30 1 5.5744 1.1506 -0.5132 31 1 6.5945 2.9294 -0.3852 32 1 6.7830 4.4331 0.5532 33 1 8.5790 1.9665 0.6785 34 1 9.0046 3.5573 0.0014 35 1 9.9147 3.3180 2.2869 36 1 8.6677 4.5870 2.2418 37 1 6.5619 1.3906 6.3891 38 1 6.3793 4.1402 3.2377 39 1 5.9739 2.4791 3.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118719552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:00 Heat of formation + Delta-G solvation = 39.374561 kcal Electronic energy + Delta-G solvation = -21754.476411 eV Core-core repulsion = 18505.432318 eV Total energy + Delta-G solvation = -3249.044092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.06849 -39.30280 -36.64330 -33.64656 -33.25121 -32.32360 -31.73590 -30.19612 -29.31151 -27.69882 -25.01516 -24.37555 -21.84731 -21.58712 -20.73470 -19.51087 -18.20107 -17.74601 -16.83413 -16.07933 -15.50656 -15.08163 -14.91514 -14.48604 -14.13908 -13.64558 -13.51700 -13.31111 -13.06597 -12.85190 -12.56650 -12.46970 -12.35338 -11.87157 -11.79879 -11.57367 -10.95733 -10.86786 -10.49620 -10.34747 -10.19205 -10.06003 -9.94600 -9.83984 -9.47754 -9.19123 -9.06423 -8.79064 -8.38858 -7.67442 -5.95100 -4.04268 1.64677 2.65759 2.89151 3.31447 3.35153 3.40521 3.41831 3.79466 4.04597 4.46380 4.58469 4.74687 5.08901 5.16004 5.19306 5.34098 5.36733 5.47862 5.54335 5.58418 5.70926 5.72719 6.03300 6.20920 6.31441 6.35907 6.47086 6.64882 6.72866 6.90441 7.02131 7.07176 7.20903 7.34962 7.68745 7.92414 8.04509 8.17128 8.31087 8.43591 8.93246 9.00855 9.61193 11.10016 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.004494 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.121331 B = 6228.709762 C = 7160.545661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.278 3.722 3 N -0.531 5.531 4 C 0.258 3.742 5 C -0.051 4.051 6 C 0.514 3.486 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.114 3.886 23 N -0.304 5.304 24 N -0.484 5.484 25 H 0.438 0.562 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -1.986 -15.133 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.000 4.000 3 N -0.260 5.260 4 C -0.025 4.025 5 C -0.094 4.094 6 C 0.299 3.701 7 O -0.405 6.405 8 N -0.340 5.340 9 C -0.016 4.016 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.006 4.006 23 N -0.133 5.133 24 N -0.203 5.203 25 H 0.283 0.717 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.063 -2.375 -14.515 17.276 hybrid contribution 0.021 -0.376 0.960 1.032 sum -9.041 -2.751 -13.555 16.524 Atomic orbital electron populations 1.20356 0.83829 1.05035 1.04187 1.24328 0.96517 0.82920 0.96280 1.70280 1.01383 1.29513 1.24807 1.23350 0.92601 0.89713 0.96809 1.20016 0.93195 0.98201 0.97942 1.19969 0.80866 0.79557 0.89716 1.90735 1.52581 1.51316 1.45849 1.48455 1.30049 1.46193 1.09254 1.21674 0.92476 0.98123 0.89367 1.21952 0.94858 1.01435 0.99025 1.21624 0.99861 0.99809 0.93537 1.19042 0.89996 0.96034 0.92806 0.95302 1.21050 1.20773 1.24105 0.90173 0.92426 1.25056 0.94926 0.94772 0.99239 1.69889 1.24874 1.27394 1.29565 0.86664 0.78656 0.78775 0.83940 1.20225 1.21308 1.20297 1.22356 0.99950 0.99436 0.78852 1.78002 0.96414 1.12348 1.26497 1.47911 1.04377 1.09845 1.58133 0.71732 0.89211 0.89995 0.88372 0.86620 0.87000 0.91097 0.91819 0.92090 0.92169 0.93060 0.93169 0.92643 0.93971 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 36.00 0.38 -0.15 16 2 C 0.28 3.57 8.24 -155.69 -1.28 2.29 16 3 N -0.53 -8.84 11.19 -8.16 -0.09 -8.93 16 4 C 0.26 4.54 6.63 -156.85 -1.04 3.50 16 5 C -0.05 -0.81 4.68 -29.04 -0.14 -0.94 16 6 C 0.51 10.83 7.69 -10.98 -0.08 10.74 16 7 O -0.53 -13.82 15.45 5.56 0.09 -13.74 16 8 N -0.61 -12.39 2.97 -172.51 -0.51 -12.90 16 9 C 0.11 1.64 6.34 -3.71 -0.02 1.62 16 10 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 11 C -0.11 -2.21 5.10 -26.69 -0.14 -2.34 16 12 C 0.04 1.01 2.26 -91.42 -0.21 0.81 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -14.37 8.56 -34.44 -0.29 -14.67 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -26.33 11.41 55.43 0.63 -25.70 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.11 2.83 5.43 -3.49 -0.02 2.81 16 23 N -0.30 -5.24 12.80 32.42 0.41 -4.82 16 24 N -0.48 -6.22 7.45 32.62 0.24 -5.97 16 25 H 0.44 3.73 8.96 -182.34 -1.63 2.09 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.49 7.95 -51.93 -0.41 1.08 16 30 H 0.11 1.50 7.68 -51.93 -0.40 1.10 16 31 H 0.07 0.84 5.94 -51.93 -0.31 0.53 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 38 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.12 3.54 5.15 -51.93 -0.27 3.27 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -36.94 322.08 -9.29 -46.22 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.79 Total: 1.36 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -3.10 Total: 3.04 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.69 Total: -58.33 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.94 -9.29 -46.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118719552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.597 kcal (2) G-P(sol) polarization free energy of solvation -36.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds