Wall clock time and date at job start Mon Mar 30 2020 23:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30834 * 125.96325 * 2 1 4 4 C 1.33242 * 109.83168 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.53111 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46617 * 90.00348 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.62757 * 359.72633 * 8 6 5 10 10 C 1.53186 * 108.77547 * 233.58511 * 9 8 6 11 11 C 1.53042 * 109.31424 * 305.36982 * 10 9 8 12 12 C 1.53042 * 109.54144 * 61.36113 * 11 10 9 13 13 H 1.09001 * 109.49569 * 58.58712 * 12 11 10 14 14 C 1.50699 * 109.49872 * 178.68339 * 12 11 10 15 15 H 1.07995 * 119.99995 * 0.02562 * 14 12 11 16 16 C 1.37877 * 119.99595 * 179.97438 * 14 12 11 17 17 N 1.31510 * 120.00489 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99698 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47016 * 60.00495 * 18 16 14 20 20 H 1.48503 * 109.47002 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47177 * 300.00454 * 18 16 14 22 22 C 1.46918 * 120.63039 * 179.44612 * 8 6 5 23 23 N 1.30720 * 108.94339 * 0.27059 * 4 3 2 24 24 N 1.34434 * 125.96063 * 179.97438 * 2 1 3 25 25 H 0.96997 * 126.81974 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.46903 * 90.01466 * 1 2 3 27 27 H 1.08995 * 109.47439 * 210.02369 * 1 2 3 28 28 H 1.09000 * 109.46641 * 330.02411 * 1 2 3 29 29 H 1.09001 * 109.46798 * 330.01239 * 5 4 3 30 30 H 1.08993 * 109.47546 * 210.00791 * 5 4 3 31 31 H 1.08994 * 109.58636 * 353.37407 * 9 8 6 32 32 H 1.09001 * 109.57902 * 113.79870 * 9 8 6 33 33 H 1.08998 * 109.50144 * 65.31586 * 10 9 8 34 34 H 1.08996 * 109.49951 * 185.41700 * 10 9 8 35 35 H 1.08993 * 109.46497 * 181.38716 * 11 10 9 36 36 H 1.09006 * 109.45814 * 301.34704 * 11 10 9 37 37 H 0.96999 * 120.00185 * 179.97438 * 17 16 14 38 38 H 1.08995 * 109.59003 * 246.20126 * 22 8 6 39 39 H 1.08997 * 109.58851 * 6.63324 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6235 0.0002 6 6 5.1309 1.9360 1.4209 7 8 4.5095 1.4516 2.3429 8 7 6.1700 2.7585 1.6669 9 6 6.9321 3.3533 0.5605 10 6 8.4183 3.0414 0.7617 11 6 8.8517 3.5165 2.1505 12 6 8.0521 2.7688 3.2200 13 1 8.2161 1.6965 3.1135 14 6 8.5023 3.2139 4.5875 15 1 9.2806 3.9562 4.6847 16 6 7.9196 2.6741 5.7146 17 7 6.9715 1.7706 5.5962 18 14 8.4772 3.2264 7.4098 19 1 8.2513 4.6870 7.5538 20 1 7.7010 2.5004 8.4470 21 1 9.9228 2.9303 7.5763 22 6 6.5581 3.0821 3.0465 23 7 3.6194 -0.6169 -0.0049 24 7 2.2964 -1.0881 0.0005 25 1 2.0093 -2.0146 0.0006 26 1 -0.3633 -0.0003 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3632 0.8902 0.5135 29 1 4.4703 2.5467 -0.5142 30 1 5.5744 1.1506 -0.5132 31 1 6.5945 2.9294 -0.3852 32 1 6.7830 4.4331 0.5532 33 1 8.5790 1.9665 0.6785 34 1 9.0046 3.5573 0.0014 35 1 9.9147 3.3180 2.2869 36 1 8.6677 4.5870 2.2418 37 1 6.5619 1.3906 6.3891 38 1 6.3793 4.1402 3.2377 39 1 5.9739 2.4791 3.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118719552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:58 Heat of formation + Delta-G solvation = 12.586653 kcal Electronic energy + Delta-G solvation = -21755.638021 eV Core-core repulsion = 18505.432318 eV Total energy + Delta-G solvation = -3250.205703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.16803 -40.92729 -38.33231 -35.34611 -34.64094 -33.45441 -33.35824 -31.74032 -30.69431 -28.69164 -26.98509 -25.98591 -23.45543 -22.79703 -21.94843 -21.09432 -19.70614 -18.86029 -18.58430 -17.92906 -16.89251 -16.56317 -16.39492 -16.26899 -15.30073 -15.13531 -14.86361 -14.73900 -14.33942 -14.18927 -13.94441 -13.64865 -13.59192 -13.45000 -13.06482 -12.85482 -12.75557 -12.67049 -12.26022 -12.25049 -11.77197 -11.60528 -11.24039 -11.12590 -11.08401 -10.92683 -10.71220 -10.52766 -10.37351 -9.38194 -8.11084 -6.28760 0.56713 1.39439 1.41483 1.49720 1.65679 1.72692 1.76114 2.35058 2.43519 3.00944 3.17262 3.53514 3.72005 3.89780 4.13528 4.22366 4.34583 4.38558 4.40762 4.65189 4.70942 4.73887 4.79497 4.84459 4.90747 5.04463 5.13947 5.24762 5.29059 5.31450 5.34246 5.40360 5.55400 5.67377 5.91443 6.00818 6.22209 6.33443 6.67891 6.84980 7.06687 7.33549 7.42083 8.91948 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.004494 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.121331 B = 6228.709762 C = 7160.545661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.568 5.568 4 C 0.238 3.762 5 C -0.038 4.038 6 C 0.505 3.495 7 O -0.593 6.593 8 N -0.608 5.608 9 C 0.099 3.901 10 C -0.128 4.128 11 C -0.106 4.106 12 C 0.039 3.961 13 H -0.016 1.016 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.127 3.873 23 N -0.342 5.342 24 N -0.476 5.476 25 H 0.455 0.545 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.258 0.742 38 H 0.037 0.963 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 -0.970 -17.452 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.298 5.298 4 C -0.045 4.045 5 C -0.080 4.080 6 C 0.293 3.707 7 O -0.474 6.474 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.166 4.166 11 C -0.144 4.144 12 C 0.019 3.981 13 H 0.002 0.998 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.556 5.556 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.192 1.192 22 C 0.004 3.996 23 N -0.171 5.171 24 N -0.196 5.196 25 H 0.303 0.697 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.124 -1.354 -16.888 19.243 hybrid contribution -0.002 -0.735 1.671 1.826 sum -9.126 -2.089 -15.216 17.866 Atomic orbital electron populations 1.20647 0.79764 1.06263 1.06388 1.25327 0.98430 0.81965 0.93687 1.70269 1.01518 1.31402 1.26636 1.23650 0.93488 0.90071 0.97327 1.20039 0.93922 0.99920 0.94111 1.20919 0.79990 0.78344 0.91455 1.90697 1.54721 1.53640 1.48347 1.48487 1.30461 1.46174 1.08863 1.22128 0.91390 0.99497 0.89193 1.21929 0.95869 1.01319 0.97433 1.21522 0.98915 0.99505 0.94413 1.18978 0.91154 0.93931 0.94002 0.99783 1.21540 1.20542 1.23774 0.91703 0.91833 1.25930 0.94914 0.94821 1.03439 1.70112 1.26405 1.29038 1.30093 0.85611 0.78453 0.78685 0.78941 1.19009 1.21642 1.19172 1.21746 0.98974 0.97833 0.81039 1.77864 0.98984 1.12651 1.27617 1.47832 1.03187 1.10992 1.57583 0.69689 0.86319 0.87200 0.88623 0.83147 0.84223 0.86517 0.89672 0.93063 0.87420 0.93080 0.92317 0.93314 0.94458 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.51 71.23 0.75 -0.08 16 2 C 0.28 6.93 8.24 138.22 1.14 8.06 16 3 N -0.57 -18.58 11.19 -179.72 -2.01 -20.59 16 4 C 0.24 8.25 6.63 138.63 0.92 9.17 16 5 C -0.04 -1.15 4.68 29.10 0.14 -1.02 16 6 C 0.51 21.56 7.69 87.65 0.67 22.24 16 7 O -0.59 -32.71 15.45 -3.04 -0.05 -32.76 16 8 N -0.61 -24.80 2.97 -818.08 -2.43 -27.22 16 9 C 0.10 2.71 6.34 86.36 0.55 3.25 16 10 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 11 C -0.11 -4.10 5.10 30.62 0.16 -3.94 16 12 C 0.04 2.00 2.26 -11.31 -0.03 1.97 16 13 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 14 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 16 C 0.01 0.47 5.30 84.66 0.45 0.92 16 17 N -0.92 -57.98 11.41 21.45 0.24 -57.73 16 18 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C 0.13 6.53 5.43 86.51 0.47 7.00 16 23 N -0.34 -11.72 12.80 -51.33 -0.66 -12.38 16 24 N -0.48 -11.81 7.45 -50.71 -0.38 -12.19 16 25 H 0.45 7.21 8.96 -213.10 -1.91 5.30 16 26 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.15 3.40 7.95 -2.39 -0.02 3.38 16 30 H 0.14 3.36 7.68 -2.39 -0.02 3.34 16 31 H 0.12 2.17 5.94 -2.39 -0.01 2.16 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.07 4.42 5.15 -2.39 -0.01 4.41 16 Total: -1.00 -88.45 322.08 1.53 -86.92 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.84 Total: 14.56 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.62 Total: 14.00 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.23 Total: -130.11 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -88.45 1.53 -86.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118719552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.507 kcal (2) G-P(sol) polarization free energy of solvation -88.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds