Wall clock time and date at job start Tue Mar 31 2020 00:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30832 * 125.96028 * 2 1 4 4 C 1.33238 * 109.82975 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52827 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46948 * 89.99992 * 5 4 3 7 7 O 1.21275 * 120.00036 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63359 * 359.71934 * 8 6 5 10 10 C 1.53626 * 108.54290 * 126.36616 * 9 8 6 11 11 C 1.53033 * 109.23903 * 54.86048 * 10 9 8 12 12 C 1.53045 * 109.54113 * 298.50662 * 11 10 9 13 13 H 1.08997 * 109.49417 * 301.41658 * 12 11 10 14 14 C 1.50694 * 109.49686 * 181.31824 * 12 11 10 15 15 H 1.07999 * 120.00622 * 0.16397 * 14 12 11 16 16 C 1.37886 * 119.99793 * 180.16105 * 14 12 11 17 17 N 1.31512 * 119.99737 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99923 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47263 * 60.00709 * 18 16 14 20 20 H 1.48498 * 109.46971 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47563 * 300.00066 * 18 16 14 22 22 C 1.46926 * 120.63109 * 180.02562 * 8 6 5 23 23 N 1.30719 * 108.94283 * 359.97438 * 4 3 2 24 24 N 1.34425 * 125.95942 * 179.68265 * 2 1 3 25 25 H 0.96996 * 126.82287 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46953 * 90.02844 * 1 2 3 27 27 H 1.09000 * 109.47318 * 210.02442 * 1 2 3 28 28 H 1.09000 * 109.47161 * 330.03072 * 1 2 3 29 29 H 1.09002 * 109.46900 * 210.00173 * 5 4 3 30 30 H 1.09000 * 109.47161 * 329.99682 * 5 4 3 31 31 H 1.08996 * 109.58724 * 246.20325 * 9 8 6 32 32 H 1.09000 * 109.58515 * 6.62857 * 9 8 6 33 33 H 1.08997 * 109.63570 * 294.86500 * 10 9 8 34 34 H 1.09007 * 109.45656 * 174.74030 * 10 9 8 35 35 H 1.09009 * 109.45881 * 178.48879 * 11 10 9 36 36 H 1.08999 * 109.45235 * 58.52596 * 11 10 9 37 37 H 0.96998 * 119.99938 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58718 * 353.37225 * 22 8 6 39 39 H 1.08993 * 109.58783 * 113.80035 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6237 0.0013 6 6 5.1305 1.9350 1.4223 7 8 4.5122 1.4456 2.3437 8 7 6.1693 2.7574 1.6692 9 6 6.9319 3.3531 0.5636 10 6 6.9665 4.8765 0.7590 11 6 7.5232 5.1941 2.1486 12 6 6.6070 4.5926 3.2168 13 1 5.6019 4.9990 3.1047 14 6 7.1385 4.9334 4.5852 15 1 8.0382 5.5226 4.6838 16 6 6.4759 4.4930 5.7114 17 7 5.3806 3.7752 5.5914 18 14 7.1351 4.9149 7.4075 19 1 7.1763 6.3905 7.5697 20 1 6.2481 4.3273 8.4435 21 1 8.5050 4.3619 7.5580 22 6 6.5651 3.0700 3.0492 23 7 3.6194 -0.6168 0.0015 24 7 2.2964 -1.0881 0.0060 25 1 2.0093 -2.0145 0.0108 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 5.5746 1.1511 -0.5123 30 1 4.4704 2.5472 -0.5126 31 1 7.9479 2.9583 0.5660 32 1 6.4477 3.1158 -0.3837 33 1 5.9580 5.2802 0.6700 34 1 7.6065 5.3255 -0.0006 35 1 7.5745 6.2749 2.2810 36 1 8.5221 4.7686 2.2455 37 1 4.9147 3.4651 6.3836 38 1 5.8389 2.6458 3.7426 39 1 7.5518 2.6528 3.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118719553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:03 Heat of formation + Delta-G solvation = 39.599588 kcal Electronic energy + Delta-G solvation = -21772.132112 eV Core-core repulsion = 18523.097778 eV Total energy + Delta-G solvation = -3249.034335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06686 -39.30173 -36.63928 -33.64457 -33.25106 -32.31626 -31.72683 -30.18627 -29.30432 -27.69125 -25.01221 -24.37600 -21.85214 -21.56559 -20.74642 -19.51053 -18.15426 -17.78817 -16.83369 -16.07143 -15.50198 -15.09680 -14.84405 -14.54236 -14.13909 -13.63124 -13.49852 -13.29115 -13.02674 -12.83622 -12.61140 -12.47176 -12.32826 -11.85285 -11.81378 -11.56670 -10.95376 -10.86486 -10.49174 -10.34912 -10.18430 -10.05505 -9.93320 -9.83608 -9.47414 -9.18925 -9.05921 -8.78777 -8.38188 -7.67456 -5.94635 -4.03854 1.64142 2.65378 2.90083 3.31466 3.35332 3.40762 3.42045 3.79695 4.06441 4.46675 4.57961 4.76130 5.09156 5.17821 5.21817 5.34291 5.36985 5.47126 5.53997 5.61644 5.71973 5.72863 6.03328 6.21643 6.31425 6.36394 6.47353 6.65721 6.73415 6.90912 7.02959 7.07028 7.21146 7.35414 7.69447 7.93382 8.05238 8.18003 8.31355 8.44133 8.93323 9.01276 9.61539 11.10382 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.004559 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.632213 B = 6139.642527 C = 7040.772390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.279 3.721 3 N -0.528 5.528 4 C 0.260 3.740 5 C -0.051 4.051 6 C 0.514 3.486 7 O -0.529 6.529 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.114 3.886 23 N -0.308 5.308 24 N -0.485 5.485 25 H 0.437 0.563 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.264 0.736 38 H 0.122 0.878 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -6.743 -15.109 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.001 3.999 3 N -0.257 5.257 4 C -0.024 4.024 5 C -0.094 4.094 6 C 0.299 3.701 7 O -0.405 6.405 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.006 4.006 23 N -0.137 5.137 24 N -0.203 5.203 25 H 0.282 0.718 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.140 0.860 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.306 -7.116 -14.486 16.990 hybrid contribution 0.059 -0.421 0.961 1.051 sum -5.247 -7.537 -13.525 16.348 Atomic orbital electron populations 1.20366 0.83800 1.05092 1.04202 1.24347 0.96553 0.82860 0.96159 1.70306 1.01392 1.29457 1.24557 1.23353 0.92668 0.89652 0.96684 1.20019 0.93166 0.98245 0.97948 1.19962 0.80715 0.79718 0.89708 1.90733 1.52313 1.51531 1.45906 1.48456 1.30504 1.45731 1.09259 1.21768 0.96225 0.94301 0.89395 1.22024 1.01466 0.94755 0.98975 1.21623 0.99484 1.00166 0.93550 1.18974 0.95353 0.90751 0.92837 0.95269 1.21048 1.10817 1.34056 0.90159 0.92431 1.25059 0.94771 0.94945 0.99238 1.69887 1.16970 1.35249 1.29589 0.86661 0.78791 0.78615 0.83950 1.20274 1.21311 1.20268 1.22282 1.00151 0.99331 0.78842 1.77955 0.96518 1.12345 1.26863 1.47899 1.04368 1.09816 1.58266 0.71782 0.89196 0.90012 0.88273 0.87110 0.86506 0.91855 0.91076 0.91984 0.92220 0.93049 0.93214 0.92639 0.86030 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.28 3.65 8.24 -155.69 -1.28 2.37 16 3 N -0.53 -9.04 11.19 -8.16 -0.09 -9.13 16 4 C 0.26 4.56 6.63 -156.85 -1.04 3.52 16 5 C -0.05 -0.81 4.67 -29.04 -0.14 -0.95 16 6 C 0.51 10.83 7.69 -10.99 -0.08 10.74 16 7 O -0.53 -13.82 15.45 5.56 0.09 -13.74 16 8 N -0.61 -12.39 2.97 -172.48 -0.51 -12.91 16 9 C 0.11 1.64 6.37 -3.48 -0.02 1.61 16 10 C -0.13 -2.13 6.10 -26.39 -0.16 -2.30 16 11 C -0.11 -2.20 5.10 -26.69 -0.14 -2.34 16 12 C 0.04 1.00 2.25 -91.63 -0.21 0.80 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.52 -14.36 8.56 -34.44 -0.29 -14.65 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -26.29 11.39 55.43 0.63 -25.66 16 18 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.11 2.83 5.40 -3.69 -0.02 2.81 16 23 N -0.31 -5.18 12.80 32.42 0.41 -4.76 16 24 N -0.49 -6.15 7.45 32.62 0.24 -5.91 16 25 H 0.44 3.62 8.96 -182.34 -1.63 1.98 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.41 7.93 -51.93 -0.41 1.00 16 30 H 0.12 1.58 7.70 -51.93 -0.40 1.18 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -36.90 322.05 -9.28 -46.18 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.79 Total: 1.39 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -3.10 Total: 3.11 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.69 Total: -58.37 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.90 -9.28 -46.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118719553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.780 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds