Wall clock time and date at job start Tue Mar 31 2020 00:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30832 * 125.96028 * 2 1 4 4 C 1.33238 * 109.82975 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.52827 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46948 * 89.99992 * 5 4 3 7 7 O 1.21275 * 120.00036 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99773 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63359 * 359.71934 * 8 6 5 10 10 C 1.53626 * 108.54290 * 126.36616 * 9 8 6 11 11 C 1.53033 * 109.23903 * 54.86048 * 10 9 8 12 12 C 1.53045 * 109.54113 * 298.50662 * 11 10 9 13 13 H 1.08997 * 109.49417 * 301.41658 * 12 11 10 14 14 C 1.50694 * 109.49686 * 181.31824 * 12 11 10 15 15 H 1.07999 * 120.00622 * 0.16397 * 14 12 11 16 16 C 1.37886 * 119.99793 * 180.16105 * 14 12 11 17 17 N 1.31512 * 119.99737 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99923 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47263 * 60.00709 * 18 16 14 20 20 H 1.48498 * 109.46971 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47563 * 300.00066 * 18 16 14 22 22 C 1.46926 * 120.63109 * 180.02562 * 8 6 5 23 23 N 1.30719 * 108.94283 * 359.97438 * 4 3 2 24 24 N 1.34425 * 125.95942 * 179.68265 * 2 1 3 25 25 H 0.96996 * 126.82287 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46953 * 90.02844 * 1 2 3 27 27 H 1.09000 * 109.47318 * 210.02442 * 1 2 3 28 28 H 1.09000 * 109.47161 * 330.03072 * 1 2 3 29 29 H 1.09002 * 109.46900 * 210.00173 * 5 4 3 30 30 H 1.09000 * 109.47161 * 329.99682 * 5 4 3 31 31 H 1.08996 * 109.58724 * 246.20325 * 9 8 6 32 32 H 1.09000 * 109.58515 * 6.62857 * 9 8 6 33 33 H 1.08997 * 109.63570 * 294.86500 * 10 9 8 34 34 H 1.09007 * 109.45656 * 174.74030 * 10 9 8 35 35 H 1.09009 * 109.45881 * 178.48879 * 11 10 9 36 36 H 1.08999 * 109.45235 * 58.52596 * 11 10 9 37 37 H 0.96998 * 119.99938 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58718 * 353.37225 * 22 8 6 39 39 H 1.08993 * 109.58783 * 113.80035 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 0.0006 5 6 4.7373 1.6237 0.0013 6 6 5.1305 1.9350 1.4223 7 8 4.5122 1.4456 2.3437 8 7 6.1693 2.7574 1.6692 9 6 6.9319 3.3531 0.5636 10 6 6.9665 4.8765 0.7590 11 6 7.5232 5.1941 2.1486 12 6 6.6070 4.5926 3.2168 13 1 5.6019 4.9990 3.1047 14 6 7.1385 4.9334 4.5852 15 1 8.0382 5.5226 4.6838 16 6 6.4759 4.4930 5.7114 17 7 5.3806 3.7752 5.5914 18 14 7.1351 4.9149 7.4075 19 1 7.1763 6.3905 7.5697 20 1 6.2481 4.3273 8.4435 21 1 8.5050 4.3619 7.5580 22 6 6.5651 3.0700 3.0492 23 7 3.6194 -0.6168 0.0015 24 7 2.2964 -1.0881 0.0060 25 1 2.0093 -2.0145 0.0108 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 5.5746 1.1511 -0.5123 30 1 4.4704 2.5472 -0.5126 31 1 7.9479 2.9583 0.5660 32 1 6.4477 3.1158 -0.3837 33 1 5.9580 5.2802 0.6700 34 1 7.6065 5.3255 -0.0006 35 1 7.5745 6.2749 2.2810 36 1 8.5221 4.7686 2.2455 37 1 4.9147 3.4651 6.3836 38 1 5.8389 2.6458 3.7426 39 1 7.5518 2.6528 3.2498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118719553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:02 Heat of formation + Delta-G solvation = 12.865173 kcal Electronic energy + Delta-G solvation = -21773.291403 eV Core-core repulsion = 18523.097778 eV Total energy + Delta-G solvation = -3250.193626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.17108 -40.92730 -38.33067 -35.34534 -34.64100 -33.44714 -33.36058 -31.73006 -30.69461 -28.69139 -26.98121 -25.98445 -23.45579 -22.78152 -21.97399 -21.08772 -19.68268 -18.89268 -18.57428 -17.92758 -16.90773 -16.51277 -16.38417 -16.29432 -15.34566 -15.14856 -14.82454 -14.69012 -14.37632 -14.18249 -13.94325 -13.62827 -13.61749 -13.44653 -13.06241 -12.85131 -12.74725 -12.67829 -12.25321 -12.24671 -11.77260 -11.60075 -11.24139 -11.12158 -11.08008 -10.92323 -10.70952 -10.51824 -10.36843 -9.38210 -8.10421 -6.28166 0.55605 1.39783 1.41797 1.50030 1.65613 1.73838 1.74775 2.35236 2.43915 3.01847 3.17708 3.52471 3.72076 3.89923 4.14061 4.22262 4.33614 4.39499 4.40388 4.64900 4.70193 4.73720 4.79567 4.85320 4.91432 5.04168 5.14537 5.24087 5.29559 5.31757 5.34937 5.40552 5.55769 5.67711 5.92259 6.01952 6.22229 6.34028 6.68027 6.85578 7.07417 7.33635 7.42566 8.92493 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.004559 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.632213 B = 6139.642527 C = 7040.772390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.572 5.572 4 C 0.238 3.762 5 C -0.038 4.038 6 C 0.505 3.495 7 O -0.593 6.593 8 N -0.608 5.608 9 C 0.099 3.901 10 C -0.127 4.127 11 C -0.106 4.106 12 C 0.038 3.962 13 H -0.015 1.015 14 C -0.537 4.537 15 H 0.063 0.937 16 C 0.008 3.992 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.290 1.290 21 H -0.266 1.266 22 C 0.127 3.873 23 N -0.337 5.337 24 N -0.474 5.474 25 H 0.455 0.545 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.258 0.742 38 H 0.071 0.929 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.760 -6.687 -17.432 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.302 5.302 4 C -0.045 4.045 5 C -0.080 4.080 6 C 0.293 3.707 7 O -0.474 6.474 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.165 4.165 11 C -0.143 4.143 12 C 0.019 3.981 13 H 0.003 0.997 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.191 4.191 17 N -0.556 5.556 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.216 1.216 21 H -0.191 1.191 22 C 0.004 3.996 23 N -0.167 5.167 24 N -0.195 5.195 25 H 0.304 0.696 26 H 0.137 0.863 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.625 -7.058 -16.862 18.856 hybrid contribution -0.205 -0.467 1.674 1.750 sum -4.830 -7.525 -15.188 17.625 Atomic orbital electron populations 1.20646 0.79917 1.06200 1.06379 1.25285 0.98397 0.81988 0.93749 1.70288 1.01818 1.31584 1.26544 1.23645 0.93394 0.90138 0.97371 1.20041 0.94175 0.99692 0.94103 1.20915 0.79761 0.78573 0.91458 1.90695 1.54364 1.53937 1.48404 1.48487 1.30921 1.45721 1.08859 1.22221 0.97224 0.93550 0.89243 1.21998 1.01672 0.95463 0.97370 1.21519 0.98654 0.99724 0.94433 1.18913 0.94084 0.91087 0.94027 0.99717 1.21535 1.10781 1.33539 0.91686 0.91852 1.25930 0.94931 0.94818 1.03429 1.70110 1.18604 1.36755 1.30124 0.85609 0.78327 0.78783 0.78961 1.19112 1.21634 1.19112 1.21671 0.98152 0.98721 0.81049 1.77817 0.98867 1.12353 1.27615 1.47817 1.03201 1.10919 1.57543 0.69614 0.86295 0.87061 0.88915 0.83487 0.83876 0.89746 0.86489 0.92936 0.87482 0.93050 0.92399 0.93302 0.91035 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.51 71.24 0.75 -0.16 16 2 C 0.28 7.09 8.24 138.23 1.14 8.23 16 3 N -0.57 -19.40 11.19 -179.72 -2.01 -21.41 16 4 C 0.24 8.24 6.63 138.63 0.92 9.16 16 5 C -0.04 -1.16 4.67 29.10 0.14 -1.02 16 6 C 0.51 21.56 7.69 87.66 0.67 22.24 16 7 O -0.59 -32.70 15.45 -3.02 -0.05 -32.75 16 8 N -0.61 -24.81 2.97 -817.99 -2.43 -27.23 16 9 C 0.10 2.70 6.37 86.51 0.55 3.25 16 10 C -0.13 -3.65 6.10 30.82 0.19 -3.47 16 11 C -0.11 -4.09 5.10 30.62 0.16 -3.93 16 12 C 0.04 1.97 2.25 -11.45 -0.03 1.95 16 13 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 14 C -0.54 -30.29 8.56 25.60 0.22 -30.07 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 16 C 0.01 0.47 5.30 84.66 0.45 0.91 16 17 N -0.92 -57.86 11.39 21.45 0.24 -57.62 16 18 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 C 0.13 6.54 5.40 86.38 0.47 7.00 16 23 N -0.34 -11.16 12.80 -51.33 -0.66 -11.81 16 24 N -0.47 -11.53 7.45 -50.70 -0.38 -11.91 16 25 H 0.46 6.85 8.96 -213.10 -1.91 4.94 16 26 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.15 3.27 7.93 -2.39 -0.02 3.25 16 30 H 0.14 3.49 7.70 -2.39 -0.02 3.47 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.17 5.93 -2.39 -0.01 2.16 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.07 4.47 5.12 -2.39 -0.01 4.46 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -88.30 322.05 1.53 -86.76 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.84 Total: 14.52 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.62 Total: 14.09 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -5.23 Total: -129.99 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.05 Total: -32.75 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -88.30 1.53 -86.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118719553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.629 kcal (2) G-P(sol) polarization free energy of solvation -88.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds