Wall clock time and date at job start Tue Mar 31 2020 01:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.46955 * 2 1 4 4 O 1.21279 * 120.00201 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99814 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99603 * 180.02562 * 5 3 2 7 7 C 1.50709 * 109.46729 * 179.97438 * 6 5 3 8 8 C 1.40073 * 126.12313 * 259.88192 * 7 6 5 9 9 N 1.31006 * 108.25295 * 179.83823 * 8 7 6 10 10 N 1.39749 * 108.17885 * 0.35335 * 9 8 7 11 11 C 1.34642 * 126.12567 * 79.99778 * 7 6 5 12 12 C 1.51035 * 127.91038 * 359.68657 * 11 7 6 13 13 N 1.47494 * 107.00460 * 169.71753 * 12 11 7 14 14 C 1.36935 * 121.01655 * 222.90206 * 13 12 11 15 15 H 1.08003 * 120.00000 * 155.90950 * 14 13 12 16 16 C 1.38810 * 120.00058 * 335.91821 * 14 13 12 17 17 N 1.31616 * 119.99791 * 344.45450 * 16 14 13 18 18 Si 1.86801 * 120.00237 * 164.45798 * 16 14 13 19 19 H 1.48501 * 109.46987 * 89.99326 * 18 16 14 20 20 H 1.48493 * 109.47222 * 209.99609 * 18 16 14 21 21 H 1.48502 * 109.46853 * 330.00010 * 18 16 14 22 22 C 1.47090 * 117.97260 * 42.92063 * 13 12 11 23 23 C 1.46556 * 127.32195 * 179.45647 * 10 9 8 24 24 H 1.09002 * 109.46965 * 299.99761 * 1 2 3 25 25 H 1.08995 * 109.46961 * 59.99782 * 1 2 3 26 26 H 1.09003 * 109.46644 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46965 * 240.00239 * 2 1 3 28 28 H 1.08995 * 109.46961 * 120.00218 * 2 1 3 29 29 H 0.96995 * 120.00182 * 359.97438 * 5 3 2 30 30 H 1.08997 * 109.47524 * 60.00106 * 6 5 3 31 31 H 1.08991 * 109.47107 * 299.99056 * 6 5 3 32 32 H 1.08007 * 125.87116 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.95132 * 289.09278 * 12 11 7 34 34 H 1.09000 * 109.94610 * 50.34741 * 12 11 7 35 35 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.51221 * 56.33544 * 22 13 12 37 37 H 1.09002 * 109.51614 * 176.49615 * 22 13 12 38 38 H 1.09005 * 109.50594 * 41.61326 * 23 10 9 39 39 H 1.08998 * 109.50897 * 281.47318 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3528 3.0484 -0.0001 8 6 6.1786 3.2467 1.1138 9 7 7.4254 3.1728 0.7185 10 7 7.4329 2.9336 -0.6583 11 6 6.1465 2.8600 -1.0712 12 6 5.7310 2.6020 -2.5002 13 7 6.9454 2.7146 -3.3296 14 6 6.9221 3.3748 -4.5290 15 1 7.8330 3.7893 -4.9351 16 6 5.7276 3.5117 -5.2228 17 7 4.6920 2.7647 -4.9037 18 14 5.5901 4.7558 -6.6094 19 1 5.9737 4.1123 -7.8916 20 1 4.1905 5.2437 -6.6996 21 1 6.4969 5.9003 -6.3392 22 6 8.1824 2.0956 -2.8292 23 6 8.6031 2.7887 -1.5287 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9878 0.9299 -0.0005 30 1 3.4828 3.5617 0.8905 31 1 3.4820 3.5626 -0.8895 32 1 5.8448 3.4263 2.1252 33 1 5.3108 1.6003 -2.5903 34 1 4.9966 3.3439 -2.8136 35 1 3.8574 2.8600 -5.3888 36 1 8.0080 1.0369 -2.6375 37 1 8.9717 2.2066 -3.5727 38 1 9.3598 2.1879 -1.0242 39 1 9.0114 3.7733 -1.7566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128143132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:03 Heat of formation + Delta-G solvation = 57.365797 kcal Electronic energy + Delta-G solvation = -21973.471286 eV Core-core repulsion = 18725.207352 eV Total energy + Delta-G solvation = -3248.263934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99590 -39.26584 -36.32610 -34.76385 -33.00969 -32.63955 -31.21458 -30.22908 -28.82965 -26.21576 -25.23524 -23.73588 -23.17663 -21.75849 -20.19431 -19.91894 -18.39849 -17.00044 -16.73599 -16.06753 -15.58464 -15.47314 -15.13063 -14.62511 -13.94278 -13.80532 -13.70758 -13.42790 -13.33795 -13.14320 -12.51098 -12.38793 -12.16531 -11.70257 -11.66936 -11.60661 -11.31745 -11.07734 -10.98717 -10.89148 -10.73626 -10.21880 -10.18927 -10.09563 -9.63738 -8.91998 -8.69499 -8.56145 -7.92828 -7.09694 -6.02827 -3.45439 2.41483 2.93869 2.96851 3.01361 3.27929 3.36465 3.37781 3.82922 4.30584 4.93517 4.96357 5.05195 5.16385 5.18682 5.19761 5.36901 5.51174 5.54801 5.59912 5.66176 5.72850 5.83351 5.85766 5.99980 6.16286 6.21193 6.26580 6.37331 6.40114 6.54506 6.77495 6.90149 7.08008 7.13671 7.56116 7.59498 7.85296 8.07994 8.22561 8.54328 8.90648 9.53151 10.05653 11.08145 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.006392 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.608860 B = 4379.473130 C = 5959.696211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.146 4.146 3 C 0.509 3.491 4 O -0.549 6.549 5 N -0.721 5.721 6 C 0.209 3.791 7 C -0.288 4.288 8 C 0.056 3.944 9 N -0.318 5.318 10 N -0.358 5.358 11 C 0.119 3.881 12 C 0.231 3.769 13 N -0.596 5.596 14 C -0.265 4.265 15 H 0.073 0.927 16 C 0.008 3.992 17 N -0.903 5.903 18 Si 0.908 3.092 19 H -0.285 1.285 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.129 3.871 23 C 0.113 3.887 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.399 0.601 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.056 0.944 34 H 0.109 0.891 35 H 0.260 0.740 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -5.467 9.169 10.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.295 3.705 4 O -0.427 6.427 5 N -0.372 5.372 6 C 0.085 3.915 7 C -0.300 4.300 8 C -0.131 4.131 9 N -0.138 5.138 10 N -0.139 5.139 11 C -0.013 4.013 12 C 0.104 3.896 13 N -0.319 5.319 14 C -0.393 4.393 15 H 0.091 0.909 16 C -0.191 4.191 17 N -0.546 5.546 18 Si 0.737 3.263 19 H -0.211 1.211 20 H -0.212 1.212 21 H -0.204 1.204 22 C 0.001 3.999 23 C -0.010 4.010 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.192 0.808 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.328 -4.728 9.326 10.461 hybrid contribution -0.439 0.257 -0.879 1.015 sum -0.111 -4.472 8.447 9.558 Atomic orbital electron populations 1.21507 0.93338 1.01165 1.03275 1.21629 0.98428 0.94341 1.04163 1.20702 0.82263 0.91626 0.75862 1.90677 1.55420 1.46612 1.50032 1.46245 1.06747 1.09390 1.74785 1.19292 0.87833 0.82356 1.01979 1.19452 0.95363 1.22437 0.92776 1.23673 0.90083 1.00226 0.99113 1.77164 1.21033 1.24863 0.90778 1.48499 1.05871 1.54437 1.05109 1.22580 0.84488 0.95055 0.99150 1.19913 0.89850 1.01549 0.78246 1.44202 1.04605 1.62804 1.20290 1.19146 0.95460 1.28641 0.96090 0.90891 1.25036 0.97081 0.98786 0.98192 1.69935 1.03191 1.38527 1.42977 0.86210 0.77327 0.81116 0.81614 1.21142 1.21246 1.20354 1.21272 0.91784 0.94722 0.92149 1.22551 0.85141 1.02378 0.90944 0.92226 0.91906 0.92444 0.88864 0.89343 0.76727 0.91492 0.90947 0.80771 0.92598 0.87320 0.93033 0.94626 0.89722 0.90193 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.15 -1.60 6.42 -27.88 -0.18 -1.78 16 3 C 0.51 7.71 7.83 -10.99 -0.09 7.62 16 4 O -0.55 -10.43 15.98 5.56 0.09 -10.34 16 5 N -0.72 -10.49 5.55 -61.47 -0.34 -10.84 16 6 C 0.21 3.41 5.95 -5.19 -0.03 3.38 16 7 C -0.29 -5.00 5.46 -105.20 -0.57 -5.57 16 8 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 9 N -0.32 -5.87 12.61 30.70 0.39 -5.49 16 10 N -0.36 -6.84 4.03 -56.93 -0.23 -7.07 16 11 C 0.12 2.35 6.71 -82.17 -0.55 1.80 16 12 C 0.23 5.18 5.11 -4.49 -0.02 5.16 16 13 N -0.60 -13.80 3.01 -172.97 -0.52 -14.32 16 14 C -0.26 -6.74 9.67 -15.06 -0.15 -6.89 16 15 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 16 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 17 N -0.90 -24.47 11.07 55.49 0.61 -23.86 16 18 Si 0.91 20.77 29.58 -169.99 -5.03 15.74 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.13 2.39 6.49 -3.59 -0.02 2.37 16 23 C 0.11 1.92 7.44 -3.88 -0.03 1.89 16 24 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.40 5.16 8.46 -40.82 -0.35 4.81 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.18 2.22 8.06 -52.48 -0.42 1.79 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.11 2.76 6.46 -51.93 -0.34 2.42 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -30.64 327.00 -7.41 -38.05 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.71 Total: 5.53 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.59 Total: 7.66 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.09 Total: -61.57 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.64 -7.41 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128143132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.414 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds