Wall clock time and date at job start Tue Mar 31 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50702 * 109.46955 * 2 1 4 4 O 1.21279 * 120.00201 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99814 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99603 * 180.02562 * 5 3 2 7 7 C 1.50709 * 109.46729 * 179.97438 * 6 5 3 8 8 C 1.40073 * 126.12313 * 259.88192 * 7 6 5 9 9 N 1.31006 * 108.25295 * 179.83823 * 8 7 6 10 10 N 1.39749 * 108.17885 * 0.35335 * 9 8 7 11 11 C 1.34642 * 126.12567 * 79.99778 * 7 6 5 12 12 C 1.51035 * 127.91038 * 359.68657 * 11 7 6 13 13 N 1.47494 * 107.00460 * 169.71753 * 12 11 7 14 14 C 1.36935 * 121.01655 * 222.90206 * 13 12 11 15 15 H 1.08003 * 120.00000 * 155.90950 * 14 13 12 16 16 C 1.38810 * 120.00058 * 335.91821 * 14 13 12 17 17 N 1.31616 * 119.99791 * 344.45450 * 16 14 13 18 18 Si 1.86801 * 120.00237 * 164.45798 * 16 14 13 19 19 H 1.48501 * 109.46987 * 89.99326 * 18 16 14 20 20 H 1.48493 * 109.47222 * 209.99609 * 18 16 14 21 21 H 1.48502 * 109.46853 * 330.00010 * 18 16 14 22 22 C 1.47090 * 117.97260 * 42.92063 * 13 12 11 23 23 C 1.46556 * 127.32195 * 179.45647 * 10 9 8 24 24 H 1.09002 * 109.46965 * 299.99761 * 1 2 3 25 25 H 1.08995 * 109.46961 * 59.99782 * 1 2 3 26 26 H 1.09003 * 109.46644 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46965 * 240.00239 * 2 1 3 28 28 H 1.08995 * 109.46961 * 120.00218 * 2 1 3 29 29 H 0.96995 * 120.00182 * 359.97438 * 5 3 2 30 30 H 1.08997 * 109.47524 * 60.00106 * 6 5 3 31 31 H 1.08991 * 109.47107 * 299.99056 * 6 5 3 32 32 H 1.08007 * 125.87116 * 0.02562 * 8 7 6 33 33 H 1.08997 * 109.95132 * 289.09278 * 12 11 7 34 34 H 1.09000 * 109.94610 * 50.34741 * 12 11 7 35 35 H 0.97001 * 120.00162 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.51221 * 56.33544 * 22 13 12 37 37 H 1.09002 * 109.51614 * 176.49615 * 22 13 12 38 38 H 1.09005 * 109.50594 * 41.61326 * 23 10 9 39 39 H 1.08998 * 109.50897 * 281.47318 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 0.0000 7 6 5.3528 3.0484 -0.0001 8 6 6.1786 3.2467 1.1138 9 7 7.4254 3.1728 0.7185 10 7 7.4329 2.9336 -0.6583 11 6 6.1465 2.8600 -1.0712 12 6 5.7310 2.6020 -2.5002 13 7 6.9454 2.7146 -3.3296 14 6 6.9221 3.3748 -4.5290 15 1 7.8330 3.7893 -4.9351 16 6 5.7276 3.5117 -5.2228 17 7 4.6920 2.7647 -4.9037 18 14 5.5901 4.7558 -6.6094 19 1 5.9737 4.1123 -7.8916 20 1 4.1905 5.2437 -6.6996 21 1 6.4969 5.9003 -6.3392 22 6 8.1824 2.0956 -2.8292 23 6 8.6031 2.7887 -1.5287 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.9878 0.9299 -0.0005 30 1 3.4828 3.5617 0.8905 31 1 3.4820 3.5626 -0.8895 32 1 5.8448 3.4263 2.1252 33 1 5.3108 1.6003 -2.5903 34 1 4.9966 3.3439 -2.8136 35 1 3.8574 2.8600 -5.3888 36 1 8.0080 1.0369 -2.6375 37 1 8.9717 2.2066 -3.5727 38 1 9.3598 2.1879 -1.0242 39 1 9.0114 3.7733 -1.7566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128143132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:02 Heat of formation + Delta-G solvation = 36.608901 kcal Electronic energy + Delta-G solvation = -21974.371372 eV Core-core repulsion = 18725.207352 eV Total energy + Delta-G solvation = -3249.164020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43412 -40.51616 -37.97649 -36.11667 -34.63264 -33.68474 -32.80010 -31.82316 -30.27182 -27.88099 -26.66610 -25.23568 -24.43777 -23.27863 -21.59774 -21.15903 -19.94777 -18.54909 -18.23430 -17.50915 -16.94445 -16.73637 -16.54722 -16.26123 -15.52360 -15.33370 -15.07532 -14.83970 -14.70754 -14.58074 -13.98184 -13.74202 -13.36346 -13.11232 -13.04120 -12.95798 -12.71701 -12.62579 -12.58240 -12.35427 -12.04219 -11.97346 -11.92541 -11.62405 -10.91543 -10.77630 -10.07275 -9.98433 -9.38799 -8.95713 -7.99774 -5.43069 0.92675 1.44531 1.48264 1.55030 1.59526 1.66544 1.76319 2.44172 2.62354 3.19652 3.42605 3.60528 3.82223 3.91256 4.14595 4.18891 4.23342 4.30074 4.33170 4.37602 4.47206 4.72230 4.78000 4.83617 4.87451 4.93934 5.01858 5.04067 5.11941 5.23812 5.36232 5.36943 5.54462 5.57792 5.75252 6.08693 6.19561 6.67714 6.79712 6.98320 7.35837 7.64776 8.15812 9.09496 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.006392 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.608860 B = 4379.473130 C = 5959.696211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.502 3.498 4 O -0.594 6.594 5 N -0.714 5.714 6 C 0.215 3.785 7 C -0.275 4.275 8 C 0.067 3.933 9 N -0.327 5.327 10 N -0.367 5.367 11 C 0.095 3.905 12 C 0.250 3.750 13 N -0.616 5.616 14 C -0.269 4.269 15 H 0.079 0.921 16 C -0.043 4.043 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.128 3.872 23 C 0.117 3.883 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.409 0.591 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.215 0.785 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.252 0.748 36 H 0.041 0.959 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -6.224 10.675 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.178 4.178 3 C 0.291 3.709 4 O -0.475 6.475 5 N -0.365 5.365 6 C 0.091 3.909 7 C -0.287 4.287 8 C -0.120 4.120 9 N -0.147 5.147 10 N -0.148 5.148 11 C -0.037 4.037 12 C 0.123 3.877 13 N -0.339 5.339 14 C -0.398 4.398 15 H 0.097 0.903 16 C -0.239 4.239 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.002 3.998 23 C -0.006 4.006 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.244 0.756 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.231 0.769 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.131 0.869 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.577 -5.512 10.839 12.262 hybrid contribution -0.773 0.480 -1.286 1.575 sum 0.805 -5.033 9.553 10.828 Atomic orbital electron populations 1.21521 0.93355 1.02579 1.01789 1.21693 0.98312 0.91475 1.06294 1.21526 0.81812 0.93064 0.74543 1.90657 1.56399 1.48376 1.52069 1.46163 1.07071 1.08942 1.74299 1.19121 0.87356 0.83380 1.01078 1.19552 0.95570 1.20935 0.92646 1.24246 0.88947 0.98467 1.00307 1.77159 1.22045 1.25257 0.90195 1.48688 1.05801 1.54710 1.05626 1.22212 0.85720 0.97517 0.98208 1.19342 0.89141 0.99220 0.80010 1.44434 1.06108 1.63427 1.19971 1.19485 0.95540 1.28177 0.96583 0.90300 1.25716 0.97116 1.00478 1.00560 1.70081 1.03313 1.40046 1.44107 0.85313 0.76557 0.79352 0.79453 1.20647 1.22322 1.19686 1.21439 0.90236 0.94842 0.93329 1.22546 0.85155 1.02764 0.90123 0.92987 0.94190 0.89493 0.87643 0.85979 0.75551 0.90073 0.94222 0.76857 0.94594 0.91137 0.93852 0.94072 0.88238 0.86917 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.20 71.98 0.66 -2.13 16 2 C -0.14 -2.79 6.42 29.85 0.19 -2.60 16 3 C 0.50 15.02 7.83 87.66 0.69 15.71 16 4 O -0.59 -22.99 15.98 -3.03 -0.05 -23.04 16 5 N -0.71 -20.40 5.55 -466.78 -2.59 -22.99 16 6 C 0.22 7.01 5.95 85.64 0.51 7.52 16 7 C -0.27 -9.26 5.46 -20.24 -0.11 -9.37 16 8 C 0.07 1.99 11.97 85.26 1.02 3.01 16 9 N -0.33 -11.17 12.61 -56.79 -0.72 -11.89 16 10 N -0.37 -13.40 4.03 -334.04 -1.35 -14.75 16 11 C 0.09 3.72 6.71 41.30 0.28 3.99 16 12 C 0.25 11.53 5.11 85.55 0.44 11.97 16 13 N -0.62 -28.69 3.01 -701.16 -2.11 -30.81 16 14 C -0.27 -13.77 9.67 84.03 0.81 -12.95 16 15 H 0.08 3.86 7.88 -2.91 -0.02 3.84 16 16 C -0.04 -2.26 5.00 84.86 0.42 -1.83 16 17 N -0.93 -52.23 11.07 21.65 0.24 -51.99 16 18 Si 0.97 43.38 29.58 68.60 2.03 45.41 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C 0.13 4.60 6.49 86.35 0.56 5.16 16 23 C 0.12 3.71 7.44 86.45 0.64 4.35 16 24 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 25 H 0.04 0.99 8.10 -2.39 -0.02 0.98 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.41 10.07 8.46 -92.71 -0.78 9.29 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.21 4.51 8.06 -2.91 -0.02 4.49 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 3.78 6.46 -2.39 -0.02 3.76 16 35 H 0.25 13.97 8.31 -92.71 -0.77 13.19 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.10 3.22 7.94 -2.39 -0.02 3.20 16 38 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -67.70 327.00 1.84 -65.86 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.27 Total: 21.38 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 6.12 Total: 22.82 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -6.52 Total: -132.43 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.70 1.84 -65.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128143132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.466 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds