Wall clock time and date at job start Tue Mar 31 2020 00:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47041 * 2 1 4 4 N 1.31928 * 120.17026 * 263.54868 * 3 2 1 5 5 N 1.28278 * 122.32318 * 179.74253 * 4 3 2 6 6 C 1.31915 * 122.51646 * 0.54719 * 5 4 3 7 7 C 1.50703 * 120.01724 * 179.75585 * 6 5 4 8 8 C 1.38506 * 119.96889 * 359.73325 * 6 5 4 9 9 C 1.39727 * 120.17142 * 83.82349 * 3 2 1 10 10 C 1.48134 * 121.14725 * 0.02562 * 9 3 2 11 11 O 1.21512 * 119.99557 * 354.13850 * 10 9 3 12 12 N 1.34773 * 119.99797 * 174.13999 * 10 9 3 13 13 C 1.46498 * 119.99922 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47545 * 179.97438 * 13 12 10 15 15 N 1.46498 * 109.47545 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00281 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47211 * 90.00237 * 20 18 16 22 22 H 1.48496 * 109.47210 * 210.00168 * 20 18 16 23 23 H 1.48500 * 109.47198 * 330.00092 * 20 18 16 24 24 H 1.09003 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47298 * 299.99988 * 1 2 3 26 26 H 1.09000 * 109.46911 * 60.00304 * 1 2 3 27 27 H 1.08999 * 109.47298 * 240.00012 * 2 1 3 28 28 H 1.08997 * 109.47224 * 119.99263 * 2 1 3 29 29 H 1.09004 * 109.46655 * 269.98152 * 7 6 5 30 30 H 1.09003 * 109.46588 * 29.97150 * 7 6 5 31 31 H 1.08992 * 109.47587 * 149.98097 * 7 6 5 32 32 H 1.08003 * 121.08707 * 179.97438 * 8 6 5 33 33 H 0.96998 * 120.00412 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47306 * 300.00499 * 13 12 10 35 35 H 1.09007 * 109.47183 * 59.99994 * 13 12 10 36 36 H 1.09001 * 109.47372 * 300.00637 * 14 13 12 37 37 H 1.09007 * 109.46739 * 59.99901 * 14 13 12 38 38 H 0.96997 * 119.99699 * 0.02562 * 15 14 13 39 39 H 0.97003 * 119.99906 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3741 2.0033 -1.1333 5 7 2.8019 3.2116 -1.1818 6 6 2.9421 3.9580 -0.1032 7 6 3.4551 5.3698 -0.2247 8 6 2.6170 3.4437 1.1411 9 6 2.1438 2.1263 1.2010 10 6 1.7756 1.5024 2.4931 11 8 1.2689 0.3981 2.5119 12 7 2.0025 2.1596 3.6476 13 6 1.6378 1.5429 4.9254 14 6 1.9992 2.4907 6.0708 15 7 1.6351 1.8737 7.3486 16 6 1.8657 2.5414 8.5218 17 1 2.3157 3.5230 8.5049 18 6 1.5211 1.9565 9.7326 19 7 0.9732 0.7600 9.7531 20 14 1.8365 2.8670 11.3328 21 1 0.6491 3.6901 11.6763 22 1 2.0898 1.8863 12.4187 23 1 3.0212 3.7485 11.1757 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.5421 5.3696 -0.1432 30 1 3.1634 5.7803 -1.1914 31 1 3.0311 5.9804 0.5723 32 1 2.7251 4.0387 2.0360 33 1 2.4066 3.0413 3.6325 34 1 0.5659 1.3457 4.9409 35 1 2.1813 0.6056 5.0447 36 1 3.0712 2.6875 6.0551 37 1 1.4560 3.4282 5.9517 38 1 1.2305 0.9922 7.3637 39 1 0.7321 0.3514 10.5992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130452028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:09 Heat of formation + Delta-G solvation = 25.306731 kcal Electronic energy + Delta-G solvation = -20842.714856 eV Core-core repulsion = 17593.060737 eV Total energy + Delta-G solvation = -3249.654119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67584 -39.57454 -36.17755 -35.15819 -34.21545 -33.76795 -31.99233 -31.08784 -28.42273 -27.82594 -25.57675 -24.63471 -23.48006 -22.16156 -21.55971 -20.80784 -18.08296 -17.90202 -17.15782 -16.29085 -15.82659 -15.70814 -15.26424 -14.74603 -14.58340 -14.28884 -14.14007 -13.86790 -13.49104 -13.38836 -13.26732 -12.95636 -12.73007 -12.51143 -11.94771 -11.66109 -11.22482 -11.17970 -11.03058 -10.89892 -10.87113 -10.54037 -10.51814 -10.17703 -9.87545 -9.80554 -9.62122 -9.14745 -8.96531 -7.08045 -5.86705 -3.18114 0.02525 0.52190 2.55447 2.83725 3.28880 3.37569 3.42528 3.44627 3.59057 3.92494 4.03673 4.26813 4.43118 4.52757 4.71341 4.90004 5.06477 5.13777 5.26907 5.28865 5.30529 5.38988 5.41209 5.61604 5.63266 5.64097 5.80626 5.85735 5.89309 5.97102 6.15275 6.18452 6.32980 6.56305 6.56571 7.28006 7.58786 7.95683 8.30510 8.37419 9.42108 9.95433 10.30011 11.35711 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.003193 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.521329 B = 8765.958920 C = 9760.981224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C 0.120 3.880 4 N -0.240 5.240 5 N -0.227 5.227 6 C 0.057 3.943 7 C -0.101 4.101 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.556 3.444 11 O -0.512 6.512 12 N -0.711 5.711 13 C 0.110 3.890 14 C 0.144 3.856 15 N -0.729 5.729 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.911 3.089 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.399 0.601 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.387 0.613 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 6.016 -20.310 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.024 4.024 4 N -0.081 5.081 5 N -0.070 5.070 6 C -0.087 4.087 7 C -0.159 4.159 8 C -0.113 4.113 9 C -0.138 4.138 10 C 0.341 3.659 11 O -0.388 6.388 12 N -0.363 5.363 13 C -0.013 4.013 14 C 0.016 3.984 15 N -0.374 5.374 16 C -0.378 4.378 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.042 0.958 38 H 0.221 0.779 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.296 5.200 -21.779 22.632 hybrid contribution 0.126 0.861 2.547 2.692 sum 3.423 6.061 -19.232 20.453 Atomic orbital electron populations 1.21594 0.93304 1.02599 1.01726 1.20719 0.97375 0.88564 1.04838 1.23168 0.92075 0.98691 0.88492 1.73071 1.08073 1.03113 1.23867 1.72826 1.07595 0.99542 1.27035 1.22866 0.96826 0.99009 0.90014 1.20706 1.01950 0.88760 1.04468 1.22576 0.94421 0.94520 0.99811 1.21176 1.01424 0.95218 0.95969 1.17826 0.79577 0.85508 0.82998 1.90772 1.42460 1.18894 1.86700 1.45845 1.62900 1.21328 1.06216 1.21691 1.01351 0.97448 0.80778 1.20756 0.97603 0.94329 0.85727 1.42168 1.74893 1.20657 0.99693 1.19176 1.34688 0.99831 0.84119 0.91012 1.24785 1.01226 0.96817 0.97846 1.69662 1.47304 1.15186 1.25581 0.86147 0.77835 0.78539 0.83364 1.21567 1.21634 1.20670 0.91551 0.91889 0.93275 0.90198 0.87162 0.89602 0.89730 0.89948 0.82713 0.76653 0.90733 0.90736 0.95744 0.95753 0.77946 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.50 37.16 0.35 -1.14 16 2 C -0.08 -0.88 5.48 -27.88 -0.15 -1.03 16 3 C 0.12 1.50 6.16 -81.99 -0.51 0.99 16 4 N -0.24 -3.19 11.42 33.81 0.39 -2.80 16 5 N -0.23 -2.79 11.41 33.57 0.38 -2.41 16 6 C 0.06 0.54 6.86 -82.46 -0.57 -0.03 16 7 C -0.10 -0.56 10.19 36.01 0.37 -0.20 16 8 C -0.08 -0.74 9.34 -38.78 -0.36 -1.10 16 9 C -0.12 -1.42 5.92 -104.57 -0.62 -2.04 16 10 C 0.56 7.27 7.73 -12.20 -0.09 7.17 16 11 O -0.51 -7.98 12.01 5.35 0.06 -7.91 16 12 N -0.71 -8.62 5.51 -61.16 -0.34 -8.96 16 13 C 0.11 1.71 5.79 -4.04 -0.02 1.69 16 14 C 0.14 2.62 6.37 -4.04 -0.03 2.59 16 15 N -0.73 -17.75 5.60 -59.91 -0.34 -18.08 16 16 C -0.25 -6.69 9.99 -15.06 -0.15 -6.85 16 17 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 20 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.80 6.89 -51.93 -0.36 0.44 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.11 1.39 5.92 -51.93 -0.31 1.08 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.16 0.85 6.65 -52.48 -0.35 0.50 16 33 H 0.40 3.65 6.69 -40.82 -0.27 3.37 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.39 9.98 7.67 -40.82 -0.31 9.67 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -32.56 330.06 -6.41 -38.97 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.37 Total: 6.66 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.87 Total: -0.32 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.82 Total: -59.11 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.06 Total: -7.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.56 -6.41 -38.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130452028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.274 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds