Wall clock time and date at job start Tue Mar 31 2020 00:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.47041 * 2 1 4 4 N 1.31928 * 120.17026 * 263.54868 * 3 2 1 5 5 N 1.28278 * 122.32318 * 179.74253 * 4 3 2 6 6 C 1.31915 * 122.51646 * 0.54719 * 5 4 3 7 7 C 1.50703 * 120.01724 * 179.75585 * 6 5 4 8 8 C 1.38506 * 119.96889 * 359.73325 * 6 5 4 9 9 C 1.39727 * 120.17142 * 83.82349 * 3 2 1 10 10 C 1.48134 * 121.14725 * 0.02562 * 9 3 2 11 11 O 1.21512 * 119.99557 * 354.13850 * 10 9 3 12 12 N 1.34773 * 119.99797 * 174.13999 * 10 9 3 13 13 C 1.46498 * 119.99922 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47545 * 179.97438 * 13 12 10 15 15 N 1.46498 * 109.47545 * 180.02562 * 14 13 12 16 16 C 1.36936 * 120.00281 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00019 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47211 * 90.00237 * 20 18 16 22 22 H 1.48496 * 109.47210 * 210.00168 * 20 18 16 23 23 H 1.48500 * 109.47198 * 330.00092 * 20 18 16 24 24 H 1.09003 * 109.46657 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47298 * 299.99988 * 1 2 3 26 26 H 1.09000 * 109.46911 * 60.00304 * 1 2 3 27 27 H 1.08999 * 109.47298 * 240.00012 * 2 1 3 28 28 H 1.08997 * 109.47224 * 119.99263 * 2 1 3 29 29 H 1.09004 * 109.46655 * 269.98152 * 7 6 5 30 30 H 1.09003 * 109.46588 * 29.97150 * 7 6 5 31 31 H 1.08992 * 109.47587 * 149.98097 * 7 6 5 32 32 H 1.08003 * 121.08707 * 179.97438 * 8 6 5 33 33 H 0.96998 * 120.00412 * 0.02562 * 12 10 9 34 34 H 1.09001 * 109.47306 * 300.00499 * 13 12 10 35 35 H 1.09007 * 109.47183 * 59.99994 * 13 12 10 36 36 H 1.09001 * 109.47372 * 300.00637 * 14 13 12 37 37 H 1.09007 * 109.46739 * 59.99901 * 14 13 12 38 38 H 0.96997 * 119.99699 * 0.02562 * 15 14 13 39 39 H 0.97003 * 119.99906 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3741 2.0033 -1.1333 5 7 2.8019 3.2116 -1.1818 6 6 2.9421 3.9580 -0.1032 7 6 3.4551 5.3698 -0.2247 8 6 2.6170 3.4437 1.1411 9 6 2.1438 2.1263 1.2010 10 6 1.7756 1.5024 2.4931 11 8 1.2689 0.3981 2.5119 12 7 2.0025 2.1596 3.6476 13 6 1.6378 1.5429 4.9254 14 6 1.9992 2.4907 6.0708 15 7 1.6351 1.8737 7.3486 16 6 1.8657 2.5414 8.5218 17 1 2.3157 3.5230 8.5049 18 6 1.5211 1.9565 9.7326 19 7 0.9732 0.7600 9.7531 20 14 1.8365 2.8670 11.3328 21 1 0.6491 3.6901 11.6763 22 1 2.0898 1.8863 12.4187 23 1 3.0212 3.7485 11.1757 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.5421 5.3696 -0.1432 30 1 3.1634 5.7803 -1.1914 31 1 3.0311 5.9804 0.5723 32 1 2.7251 4.0387 2.0360 33 1 2.4066 3.0413 3.6325 34 1 0.5659 1.3457 4.9409 35 1 2.1813 0.6056 5.0447 36 1 3.0712 2.6875 6.0551 37 1 1.4560 3.4282 5.9517 38 1 1.2305 0.9922 7.3637 39 1 0.7321 0.3514 10.5992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130452028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:07 Heat of formation + Delta-G solvation = 1.665747 kcal Electronic energy + Delta-G solvation = -20843.740006 eV Core-core repulsion = 17593.060737 eV Total energy + Delta-G solvation = -3250.679269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.54306 -40.62127 -37.50340 -36.25362 -35.48359 -34.78642 -33.29921 -32.44887 -29.61176 -28.86758 -26.53959 -25.84181 -24.90394 -23.31170 -22.77492 -21.86089 -19.43296 -18.85269 -18.67746 -17.17786 -16.97095 -16.75218 -16.43849 -16.26884 -15.78258 -15.23381 -15.19778 -15.06066 -14.91992 -14.75591 -14.19732 -14.01853 -13.28236 -13.20481 -13.12305 -13.03697 -12.80183 -12.68522 -12.52955 -12.12135 -12.06640 -11.90277 -11.83573 -11.47198 -11.37942 -10.98471 -10.62767 -10.57886 -10.21643 -9.05633 -7.96404 -5.27414 -0.82866 -0.26662 1.49758 1.51579 1.57728 1.59874 1.77027 2.41719 2.57405 2.81303 3.12599 3.23607 3.38539 3.49406 3.64414 3.96846 3.99709 4.15366 4.20811 4.22185 4.24077 4.38589 4.52436 4.58962 4.67388 4.78482 4.89374 4.93275 4.98451 5.03813 5.13393 5.19909 5.26629 5.29868 5.36520 5.49994 6.24607 6.30447 6.96455 7.31321 7.53427 8.03464 8.25229 9.27178 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025483 B = 0.003193 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.521329 B = 8765.958920 C = 9760.981224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C 0.109 3.891 4 N -0.265 5.265 5 N -0.254 5.254 6 C 0.060 3.940 7 C -0.100 4.100 8 C -0.065 4.065 9 C -0.137 4.137 10 C 0.559 3.441 11 O -0.542 6.542 12 N -0.698 5.698 13 C 0.129 3.871 14 C 0.147 3.853 15 N -0.747 5.747 16 C -0.247 4.247 17 H 0.084 0.916 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.977 3.023 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.265 1.265 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.195 0.805 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 8.612 -20.525 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.037 4.037 4 N -0.106 5.106 5 N -0.096 5.096 6 C -0.085 4.085 7 C -0.158 4.158 8 C -0.095 4.095 9 C -0.151 4.151 10 C 0.345 3.655 11 O -0.420 6.420 12 N -0.351 5.351 13 C 0.004 3.996 14 C 0.020 3.980 15 N -0.391 5.391 16 C -0.379 4.379 17 H 0.102 0.898 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.190 1.190 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.212 0.788 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.397 7.858 -22.056 23.823 hybrid contribution -0.163 0.142 2.512 2.521 sum 4.234 7.999 -19.544 21.538 Atomic orbital electron populations 1.21533 0.93151 1.02993 1.00930 1.20666 0.97489 0.88614 1.04525 1.23242 0.92549 0.99008 0.88897 1.73023 1.09215 1.03975 1.24352 1.72750 1.08520 0.99578 1.28762 1.23494 0.95443 1.00201 0.89368 1.20888 1.02873 0.86414 1.05596 1.23013 0.91912 0.93386 1.01181 1.21030 1.02963 0.96495 0.94581 1.18028 0.78855 0.85102 0.83528 1.90768 1.43725 1.20329 1.87143 1.45550 1.62826 1.21949 1.04738 1.21247 1.00307 0.96517 0.81494 1.20873 0.98339 0.94825 0.83959 1.42411 1.74955 1.20383 1.01329 1.19643 1.33003 1.00089 0.85117 0.89790 1.25637 1.02092 0.97785 1.01303 1.69826 1.49386 1.16996 1.25847 0.85098 0.78092 0.77238 0.79049 1.21359 1.22513 1.18963 0.90613 0.93646 0.92890 0.89386 0.88458 0.88096 0.89741 0.87234 0.78807 0.74571 0.92062 0.92114 0.94273 0.94159 0.79392 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.50 71.98 0.68 -2.21 16 2 C -0.07 -1.74 5.48 29.85 0.16 -1.58 16 3 C 0.11 2.67 6.16 42.91 0.26 2.94 16 4 N -0.27 -6.97 11.42 -46.94 -0.54 -7.50 16 5 N -0.25 -5.96 11.41 -47.69 -0.54 -6.51 16 6 C 0.06 0.97 6.86 42.61 0.29 1.26 16 7 C -0.10 -0.75 10.19 71.24 0.73 -0.02 16 8 C -0.07 -0.96 9.34 22.79 0.21 -0.74 16 9 C -0.14 -2.95 5.92 -19.83 -0.12 -3.07 16 10 C 0.56 14.04 7.73 86.87 0.67 14.71 16 11 O -0.54 -17.02 12.01 -3.75 -0.05 -17.07 16 12 N -0.70 -15.43 5.51 -465.70 -2.57 -18.00 16 13 C 0.13 3.86 5.79 86.38 0.50 4.36 16 14 C 0.15 5.03 6.37 86.38 0.55 5.58 16 15 N -0.75 -35.90 5.60 -343.45 -1.92 -37.82 16 16 C -0.25 -13.09 9.99 84.03 0.84 -12.25 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 19 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 20 Si 0.98 44.40 29.55 68.60 2.03 46.42 16 21 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.17 6.89 -2.39 -0.02 1.16 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.10 2.54 5.92 -2.39 -0.01 2.52 16 29 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 31 H 0.11 0.26 8.09 -2.39 -0.02 0.24 16 32 H 0.19 1.15 6.65 -2.91 -0.02 1.13 16 33 H 0.42 6.09 6.69 -92.71 -0.62 5.47 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.37 19.56 7.67 -92.71 -0.71 18.85 16 39 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -71.19 330.06 1.70 -69.49 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.25 Total: 23.84 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.25 Total: 5.23 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.29 Total: -127.91 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.05 Total: -17.07 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.19 1.70 -69.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130452028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.153 kcal (2) G-P(sol) polarization free energy of solvation -71.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds