Wall clock time and date at job start Tue Mar 31 2020 00:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47062 * 2 1 4 4 C 1.38550 * 120.01344 * 124.99808 * 3 2 1 5 5 C 1.40072 * 117.81576 * 179.75095 * 4 3 2 6 6 C 1.48134 * 121.14503 * 180.22966 * 5 4 3 7 7 O 1.21518 * 119.99892 * 173.91125 * 6 5 4 8 8 N 1.34776 * 120.00042 * 353.91427 * 6 5 4 9 9 C 1.46498 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46780 * 179.97438 * 9 8 6 11 11 N 1.46502 * 109.47143 * 180.02562 * 10 9 8 12 12 C 1.36937 * 120.00447 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99167 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47271 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46488 * 120.00285 * 16 14 12 19 19 H 1.48499 * 109.47157 * 240.00244 * 16 14 12 20 20 C 1.39769 * 117.70742 * 0.25229 * 5 4 3 21 21 C 1.50695 * 120.17118 * 180.02562 * 20 5 4 22 22 N 1.31894 * 119.65710 * 0.02562 * 20 5 4 23 23 N 1.28279 * 122.32697 * 0.02562 * 22 20 5 24 24 H 1.08996 * 109.47270 * 299.99579 * 1 2 3 25 25 H 1.09001 * 109.46936 * 60.00235 * 1 2 3 26 26 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46895 * 240.00225 * 2 1 3 28 28 H 1.09002 * 109.47402 * 120.00015 * 2 1 3 29 29 H 1.07994 * 121.09111 * 0.02902 * 4 3 2 30 30 H 0.96997 * 119.99845 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47539 * 299.99739 * 9 8 6 32 32 H 1.09003 * 109.47260 * 60.00514 * 9 8 6 33 33 H 1.08997 * 109.47127 * 299.99757 * 10 9 8 34 34 H 1.08998 * 109.47195 * 60.00004 * 10 9 8 35 35 H 0.97003 * 119.99546 * 0.02562 * 11 10 9 36 36 H 0.97000 * 120.00042 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47507 * 83.65433 * 21 20 5 38 38 H 1.08997 * 109.47261 * 203.65217 * 21 20 5 39 39 H 1.09000 * 109.47557 * 323.65133 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9121 1.8449 0.9828 5 6 3.3538 3.1733 0.9357 6 6 4.2986 3.7029 1.9463 7 8 4.7542 4.8228 1.8241 8 7 4.6528 2.9426 3.0013 9 6 5.5876 3.4662 4.0004 10 6 5.8189 2.4114 5.0844 11 7 6.7533 2.9352 6.0839 12 6 7.1132 2.1628 7.1558 13 1 6.7078 1.1677 7.2646 14 6 7.9989 2.6589 8.1025 15 7 8.4924 3.8718 7.9702 16 14 8.4892 1.6055 9.5652 17 1 7.8003 0.2925 9.4828 18 1 9.9591 1.3944 9.5525 19 1 8.0985 2.2919 10.8228 20 6 2.8720 3.9821 -0.0974 21 6 3.3112 5.4199 -0.2013 22 7 2.0309 3.4805 -0.9808 23 7 1.6295 2.2631 -0.9315 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2498 1.1720 1.7570 30 1 4.2888 2.0489 3.0990 31 1 6.5356 3.7076 3.5197 32 1 5.1699 4.3658 4.4526 33 1 4.8708 2.1704 5.5650 34 1 6.2363 1.5116 4.6326 35 1 7.1170 3.8291 5.9863 36 1 9.1110 4.2186 8.6319 37 1 4.2676 5.4710 -0.7216 38 1 2.5650 5.9886 -0.7561 39 1 3.4186 5.8402 0.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131801496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:11 Heat of formation + Delta-G solvation = 23.660329 kcal Electronic energy + Delta-G solvation = -20622.431815 eV Core-core repulsion = 17372.706303 eV Total energy + Delta-G solvation = -3249.725513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.66391 -39.58643 -36.10313 -35.43948 -34.20466 -33.71814 -31.96641 -31.16485 -28.46973 -27.65784 -26.01821 -23.89688 -23.73466 -22.59711 -21.60044 -20.69278 -18.08401 -17.80952 -17.16831 -16.08767 -16.00800 -15.68904 -15.29562 -15.09517 -14.62431 -14.46537 -14.07706 -13.85714 -13.55952 -13.25625 -13.16243 -13.00989 -12.61156 -12.33848 -12.17905 -11.61973 -11.59338 -11.22810 -11.13424 -10.90483 -10.89047 -10.55115 -10.53732 -10.14256 -9.88313 -9.79555 -9.63518 -9.16279 -8.97281 -7.08041 -5.86892 -3.18282 0.02377 0.52155 2.54979 2.83220 3.28721 3.37321 3.42581 3.45218 3.57412 3.88892 4.04858 4.25915 4.41102 4.52413 4.66922 4.74295 4.86111 5.13346 5.16832 5.29423 5.37812 5.41166 5.48671 5.53581 5.62658 5.63984 5.66902 5.80979 5.82059 5.92726 5.96799 6.13400 6.30205 6.55865 6.56460 7.27380 7.59272 7.94519 8.30303 8.37159 9.41996 9.95306 10.29868 11.35605 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.003074 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.412092 B = 9107.853840 C =10176.674513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.058 3.942 4 C -0.080 4.080 5 C -0.126 4.126 6 C 0.558 3.442 7 O -0.516 6.516 8 N -0.711 5.711 9 C 0.110 3.890 10 C 0.144 3.856 11 N -0.729 5.729 12 C -0.246 4.246 13 H 0.073 0.927 14 C -0.011 4.011 15 N -0.929 5.929 16 Si 0.910 3.090 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.118 3.882 21 C -0.106 4.106 22 N -0.242 5.242 23 N -0.221 5.221 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.399 0.601 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 -5.822 -16.547 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.141 4.141 6 C 0.342 3.658 7 O -0.393 6.393 8 N -0.363 5.363 9 C -0.013 4.013 10 C 0.016 3.984 11 N -0.374 5.374 12 C -0.377 4.377 13 H 0.091 0.909 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.741 3.259 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C -0.026 4.026 21 C -0.164 4.164 22 N -0.085 5.085 23 N -0.064 5.064 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.173 0.827 30 H 0.234 0.766 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.802 -4.875 -17.835 23.684 hybrid contribution 1.196 -1.035 2.193 2.704 sum -13.606 -5.910 -15.641 21.557 Atomic orbital electron populations 1.21716 0.93577 1.02288 1.02918 1.20477 0.97440 0.88812 1.03987 1.22858 0.94713 0.98768 0.92263 1.22593 0.94677 0.95179 0.98571 1.21170 0.99814 0.94979 0.98125 1.17829 0.81273 0.85425 0.81235 1.90775 1.54138 1.18478 1.75910 1.45841 1.47279 1.18738 1.24396 1.21700 0.92516 0.98359 0.88743 1.20757 0.94248 0.94081 0.89321 1.42181 1.52443 1.17995 1.24816 1.19222 1.21596 0.97284 0.99623 0.90948 1.24787 0.99854 0.96780 0.99293 1.69671 1.35157 1.16012 1.36887 0.86080 0.78055 0.79280 0.82492 1.20476 1.21718 1.21711 1.23160 0.91384 0.98805 0.89275 1.20983 1.01826 0.87859 1.05705 1.73090 1.09114 1.05463 1.20788 1.72744 1.17130 0.97527 1.19003 0.92691 0.91378 0.91762 0.89252 0.89636 0.82741 0.76623 0.90714 0.90725 0.95729 0.95727 0.77947 0.93326 0.89331 0.90604 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.77 37.16 0.36 -0.56 16 2 C -0.07 -0.43 6.35 -27.88 -0.18 -0.60 16 3 C 0.06 0.55 6.26 -82.45 -0.52 0.04 16 4 C -0.08 -0.72 9.29 -38.78 -0.36 -1.08 16 5 C -0.13 -1.45 5.92 -104.57 -0.62 -2.07 16 6 C 0.56 7.37 7.73 -12.20 -0.09 7.28 16 7 O -0.52 -8.26 13.53 5.35 0.07 -8.19 16 8 N -0.71 -8.70 5.51 -61.16 -0.34 -9.03 16 9 C 0.11 1.72 5.79 -4.04 -0.02 1.69 16 10 C 0.14 2.63 6.37 -4.04 -0.03 2.60 16 11 N -0.73 -17.78 5.60 -59.91 -0.34 -18.12 16 12 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 13 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 16 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 C 0.12 1.45 6.91 -82.00 -0.57 0.89 16 21 C -0.11 -1.17 8.97 36.00 0.32 -0.85 16 22 N -0.24 -3.18 11.42 33.81 0.39 -2.79 16 23 N -0.22 -2.68 11.03 33.58 0.37 -2.31 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.51 7.96 -51.93 -0.41 0.09 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.36 7.92 -51.93 -0.41 -0.05 16 29 H 0.16 0.87 6.60 -52.49 -0.35 0.52 16 30 H 0.40 3.67 6.70 -40.82 -0.27 3.40 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.39 10.00 7.67 -40.82 -0.31 9.69 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.28 5.94 -51.93 -0.31 0.98 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -32.64 332.08 -6.50 -39.14 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.42 Total: 6.32 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.94 Total: 0.11 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.81 Total: -59.15 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.07 Total: -8.19 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.64 -6.50 -39.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131801496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.798 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds