Wall clock time and date at job start Tue Mar 31 2020 00:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47062 * 2 1 4 4 C 1.38550 * 120.01344 * 124.99808 * 3 2 1 5 5 C 1.40072 * 117.81576 * 179.75095 * 4 3 2 6 6 C 1.48134 * 121.14503 * 180.22966 * 5 4 3 7 7 O 1.21518 * 119.99892 * 173.91125 * 6 5 4 8 8 N 1.34776 * 120.00042 * 353.91427 * 6 5 4 9 9 C 1.46498 * 119.99786 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.46780 * 179.97438 * 9 8 6 11 11 N 1.46502 * 109.47143 * 180.02562 * 10 9 8 12 12 C 1.36937 * 120.00447 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99167 * 359.97438 * 12 11 10 14 14 C 1.38812 * 120.00058 * 179.97438 * 12 11 10 15 15 N 1.31613 * 120.00145 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47271 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46488 * 120.00285 * 16 14 12 19 19 H 1.48499 * 109.47157 * 240.00244 * 16 14 12 20 20 C 1.39769 * 117.70742 * 0.25229 * 5 4 3 21 21 C 1.50695 * 120.17118 * 180.02562 * 20 5 4 22 22 N 1.31894 * 119.65710 * 0.02562 * 20 5 4 23 23 N 1.28279 * 122.32697 * 0.02562 * 22 20 5 24 24 H 1.08996 * 109.47270 * 299.99579 * 1 2 3 25 25 H 1.09001 * 109.46936 * 60.00235 * 1 2 3 26 26 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46895 * 240.00225 * 2 1 3 28 28 H 1.09002 * 109.47402 * 120.00015 * 2 1 3 29 29 H 1.07994 * 121.09111 * 0.02902 * 4 3 2 30 30 H 0.96997 * 119.99845 * 359.97438 * 8 6 5 31 31 H 1.09001 * 109.47539 * 299.99739 * 9 8 6 32 32 H 1.09003 * 109.47260 * 60.00514 * 9 8 6 33 33 H 1.08997 * 109.47127 * 299.99757 * 10 9 8 34 34 H 1.08998 * 109.47195 * 60.00004 * 10 9 8 35 35 H 0.97003 * 119.99546 * 0.02562 * 11 10 9 36 36 H 0.97000 * 120.00042 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47507 * 83.65433 * 21 20 5 38 38 H 1.08997 * 109.47261 * 203.65217 * 21 20 5 39 39 H 1.09000 * 109.47557 * 323.65133 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9121 1.8449 0.9828 5 6 3.3538 3.1733 0.9357 6 6 4.2986 3.7029 1.9463 7 8 4.7542 4.8228 1.8241 8 7 4.6528 2.9426 3.0013 9 6 5.5876 3.4662 4.0004 10 6 5.8189 2.4114 5.0844 11 7 6.7533 2.9352 6.0839 12 6 7.1132 2.1628 7.1558 13 1 6.7078 1.1677 7.2646 14 6 7.9989 2.6589 8.1025 15 7 8.4924 3.8718 7.9702 16 14 8.4892 1.6055 9.5652 17 1 7.8003 0.2925 9.4828 18 1 9.9591 1.3944 9.5525 19 1 8.0985 2.2919 10.8228 20 6 2.8720 3.9821 -0.0974 21 6 3.3112 5.4199 -0.2013 22 7 2.0309 3.4805 -0.9808 23 7 1.6295 2.2631 -0.9315 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2498 1.1720 1.7570 30 1 4.2888 2.0489 3.0990 31 1 6.5356 3.7076 3.5197 32 1 5.1699 4.3658 4.4526 33 1 4.8708 2.1704 5.5650 34 1 6.2363 1.5116 4.6326 35 1 7.1170 3.8291 5.9863 36 1 9.1110 4.2186 8.6319 37 1 4.2676 5.4710 -0.7216 38 1 2.5650 5.9886 -0.7561 39 1 3.4186 5.8402 0.7987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131801496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:11 Heat of formation + Delta-G solvation = 0.033858 kcal Electronic energy + Delta-G solvation = -20623.456336 eV Core-core repulsion = 17372.706303 eV Total energy + Delta-G solvation = -3250.750033 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53074 -40.65001 -37.46189 -36.29772 -35.60939 -34.73054 -33.24899 -32.41786 -29.74825 -28.73435 -27.00787 -25.53688 -24.47798 -23.64536 -22.94307 -21.70855 -19.44421 -18.75014 -18.68612 -17.10121 -16.90698 -16.78774 -16.45668 -16.30593 -15.96060 -15.32032 -15.25259 -15.05058 -14.86790 -14.68634 -14.35148 -13.93286 -13.37800 -13.15203 -13.10625 -13.02088 -12.73470 -12.70213 -12.51220 -12.15471 -12.03857 -11.87530 -11.81411 -11.48884 -11.40343 -11.00347 -10.64587 -10.57749 -10.24094 -9.05813 -7.96693 -5.27683 -0.83496 -0.27550 1.49782 1.50621 1.55947 1.60584 1.75657 2.41015 2.57134 2.80986 3.08490 3.24601 3.38465 3.47389 3.63229 3.97530 3.98934 4.09537 4.15691 4.21669 4.38618 4.41253 4.55631 4.58190 4.64684 4.65829 4.91032 4.93471 5.05641 5.08018 5.13154 5.18304 5.21840 5.32190 5.43756 5.50182 6.24505 6.28692 6.94254 7.31152 7.52890 8.03198 8.24905 9.27131 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024312 B = 0.003074 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.412092 B = 9107.853840 C =10176.674513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.060 3.940 4 C -0.062 4.062 5 C -0.139 4.139 6 C 0.561 3.439 7 O -0.549 6.549 8 N -0.697 5.697 9 C 0.127 3.873 10 C 0.147 3.853 11 N -0.748 5.748 12 C -0.245 4.245 13 H 0.085 0.915 14 C -0.077 4.077 15 N -0.971 5.971 16 Si 0.976 3.024 17 H -0.261 1.261 18 H -0.295 1.295 19 H -0.295 1.295 20 C 0.106 3.894 21 C -0.101 4.101 22 N -0.267 5.267 23 N -0.245 5.245 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.417 0.583 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.185 -8.633 -16.383 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.085 4.085 4 C -0.091 4.091 5 C -0.153 4.153 6 C 0.347 3.653 7 O -0.428 6.428 8 N -0.350 5.350 9 C 0.003 3.997 10 C 0.020 3.980 11 N -0.391 5.391 12 C -0.377 4.377 13 H 0.103 0.897 14 C -0.269 4.269 15 N -0.621 5.621 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.222 1.222 19 H -0.222 1.222 20 C -0.039 4.039 21 C -0.159 4.159 22 N -0.109 5.109 23 N -0.086 5.086 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.212 0.788 30 H 0.255 0.745 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.206 0.794 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.797 -7.745 -17.713 24.966 hybrid contribution 1.393 -0.237 2.059 2.497 sum -14.404 -7.981 -15.654 22.720 Atomic orbital electron populations 1.21709 0.93745 1.03181 1.01807 1.20670 0.97203 0.86802 1.05943 1.23427 0.94019 0.99784 0.91283 1.23021 0.93025 0.94340 0.98722 1.21000 1.00282 0.96221 0.97776 1.18038 0.80998 0.84932 0.81321 1.90770 1.55357 1.20012 1.76635 1.45547 1.46559 1.19469 1.23383 1.21266 0.92588 0.97232 0.88600 1.20875 0.93494 0.94853 0.88758 1.42426 1.53510 1.17485 1.25684 1.19681 1.20433 0.97718 0.99840 0.89738 1.25640 1.00767 0.98068 1.02411 1.69830 1.36397 1.17945 1.37932 0.85035 0.77268 0.78382 0.78810 1.18457 1.22222 1.22237 1.23285 0.91643 0.99270 0.89709 1.20909 1.02125 0.87844 1.05018 1.73056 1.09929 1.06329 1.21573 1.72671 1.17916 0.97620 1.20429 0.93173 0.93165 0.89866 0.88338 0.86554 0.78830 0.74494 0.92034 0.92095 0.94218 0.94098 0.79398 0.93947 0.89383 0.89614 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.77 71.98 0.70 -0.78 16 2 C -0.07 -0.61 6.35 29.85 0.19 -0.42 16 3 C 0.06 0.99 6.26 42.63 0.27 1.25 16 4 C -0.06 -0.91 9.29 22.79 0.21 -0.69 16 5 C -0.14 -2.98 5.92 -19.83 -0.12 -3.09 16 6 C 0.56 14.17 7.73 86.87 0.67 14.85 16 7 O -0.55 -17.65 13.53 -3.77 -0.05 -17.70 16 8 N -0.70 -15.45 5.51 -465.69 -2.57 -18.02 16 9 C 0.13 3.83 5.79 86.38 0.50 4.33 16 10 C 0.15 5.03 6.37 86.38 0.55 5.58 16 11 N -0.75 -35.88 5.60 -343.45 -1.92 -37.81 16 12 C -0.25 -12.98 9.99 84.03 0.84 -12.14 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 15 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 16 Si 0.98 44.42 29.55 68.60 2.03 46.44 16 17 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 20 C 0.11 2.58 6.91 42.92 0.30 2.88 16 21 C -0.10 -2.29 8.97 71.23 0.64 -1.65 16 22 N -0.27 -6.96 11.42 -46.94 -0.54 -7.49 16 23 N -0.24 -5.69 11.03 -47.68 -0.53 -6.21 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.05 0.69 7.96 -2.39 -0.02 0.67 16 26 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.12 0.37 7.92 -2.39 -0.02 0.35 16 29 H 0.19 1.17 6.60 -2.91 -0.02 1.15 16 30 H 0.42 6.07 6.70 -92.71 -0.62 5.45 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.37 19.56 7.67 -92.71 -0.71 18.85 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.35 5.94 -2.39 -0.01 2.33 16 Total: -1.00 -71.26 332.08 1.67 -69.59 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.25 Total: 23.02 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.22 Total: 6.32 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -5.27 Total: -127.68 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.26 1.67 -69.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131801496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.624 kcal (2) G-P(sol) polarization free energy of solvation -71.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds