Wall clock time and date at job start Tue Mar 31 2020 00:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30818 * 126.44076 * 2 1 4 4 N 1.28933 * 109.74265 * 180.12983 * 3 2 1 5 5 C 1.29726 * 109.42612 * 0.11134 * 4 3 2 6 6 N 1.34793 * 126.44022 * 179.97438 * 2 1 3 7 7 C 1.46328 * 128.58357 * 359.39411 * 6 2 1 8 8 C 1.53337 * 109.11615 * 161.85181 * 7 6 2 9 9 N 1.47075 * 109.28445 * 45.64420 * 8 7 6 10 10 C 1.34773 * 120.94987 * 116.39974 * 9 8 7 11 11 O 1.21283 * 119.99946 * 174.49713 * 10 9 8 12 12 C 1.50699 * 119.99857 * 354.49247 * 10 9 8 13 13 C 1.52999 * 109.47185 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47185 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00385 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00106 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47427 * 89.99859 * 18 16 14 20 20 H 1.48504 * 109.47180 * 210.00074 * 18 16 14 21 21 H 1.48507 * 109.46907 * 330.00024 * 18 16 14 22 22 C 1.47533 * 118.10272 * 296.41949 * 9 8 7 23 23 H 1.09001 * 109.95482 * 283.78623 * 22 9 8 24 24 C 1.52998 * 109.95528 * 162.60014 * 22 9 8 25 25 H 1.08999 * 109.47453 * 90.02334 * 1 2 3 26 26 H 1.09001 * 109.46880 * 210.02608 * 1 2 3 27 27 H 1.08999 * 109.47260 * 330.01971 * 1 2 3 28 28 H 1.08997 * 109.57294 * 41.94614 * 7 6 2 29 29 H 1.08999 * 109.52106 * 281.72723 * 7 6 2 30 30 H 1.08998 * 109.51192 * 285.68446 * 8 7 6 31 31 H 1.09005 * 109.50582 * 165.59456 * 8 7 6 32 32 H 1.09000 * 109.46669 * 299.99983 * 12 10 9 33 33 H 1.08996 * 109.46970 * 60.00176 * 12 10 9 34 34 H 1.08999 * 109.46915 * 299.99975 * 13 12 10 35 35 H 1.09004 * 109.47352 * 59.99405 * 13 12 10 36 36 H 0.97004 * 119.99958 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47128 * 70.60204 * 24 22 9 38 38 H 1.09000 * 109.47314 * 190.60487 * 24 22 9 39 39 H 1.09003 * 109.46807 * 310.60645 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6819 -0.0027 5 6 3.5808 -0.6138 -0.0070 6 7 2.3077 -1.0844 0.0005 7 6 1.9296 -2.4979 0.0132 8 6 3.1259 -3.3418 -0.4426 9 7 4.3394 -2.8756 0.2453 10 6 5.0088 -3.6818 1.0929 11 8 6.0607 -3.3167 1.5736 12 6 4.4501 -5.0368 1.4433 13 6 5.3966 -5.7427 2.4162 14 6 4.8377 -7.0974 2.7671 15 1 3.9008 -7.4223 2.3394 16 6 5.5224 -7.9222 3.6344 17 7 6.6631 -7.5264 4.1557 18 14 4.8298 -9.6018 4.0688 19 1 5.3356 -10.6106 3.1036 20 1 5.2565 -9.9731 5.4419 21 1 3.3468 -9.5570 4.0063 22 6 4.8028 -1.5001 -0.0187 23 1 5.2882 -1.4516 -0.9935 24 6 5.7800 -1.0597 1.0731 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8901 0.5135 28 1 1.0915 -2.6579 -0.6651 29 1 1.6423 -2.7890 1.0236 30 1 3.2554 -3.2379 -1.5198 31 1 2.9476 -4.3887 -0.1967 32 1 3.4726 -4.9170 1.9104 33 1 4.3490 -5.6336 0.5368 34 1 6.3743 -5.8624 1.9495 35 1 5.4975 -5.1457 3.3227 36 1 7.1450 -8.1068 4.7655 37 1 6.7164 -1.6070 0.9649 38 1 5.9712 0.0093 0.9800 39 1 5.3486 -1.2678 2.0522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135351662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:28 Heat of formation + Delta-G solvation = 50.896138 kcal Electronic energy + Delta-G solvation = -21957.380197 eV Core-core repulsion = 18708.835717 eV Total energy + Delta-G solvation = -3248.544479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.45592 -39.98582 -36.89689 -34.93121 -33.72553 -32.74078 -31.90010 -30.74749 -28.90205 -27.55233 -26.01311 -24.69074 -23.75748 -21.86514 -21.18575 -20.40828 -18.57596 -17.57085 -16.96182 -16.59332 -16.10669 -15.80308 -15.54896 -14.66921 -14.49363 -14.43761 -14.00797 -13.59334 -13.35934 -13.10265 -12.96436 -12.45826 -12.34549 -12.26124 -12.14189 -11.98375 -11.66126 -11.42998 -11.18369 -11.00532 -10.67919 -10.51710 -10.31020 -10.09581 -9.69974 -9.24931 -9.20890 -8.96240 -8.76106 -8.40789 -6.04598 -4.09876 1.62175 2.14568 2.69467 2.81580 2.95619 3.26997 3.33731 3.35358 3.93869 4.02434 4.12821 4.38687 4.50164 4.54383 4.66368 4.93724 5.01421 5.08103 5.09094 5.26908 5.28645 5.30669 5.36513 5.50458 5.70701 5.81739 5.95164 5.98073 5.99866 6.13452 6.32190 6.58529 6.63597 6.71685 7.41446 7.63705 7.73477 7.96282 8.26372 8.48952 8.60068 8.97914 9.54339 11.06176 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.003997 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.359291 B = 7002.869416 C = 7650.386306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.174 3.826 3 N -0.300 5.300 4 N -0.282 5.282 5 C 0.171 3.829 6 N -0.467 5.467 7 C 0.085 3.915 8 C 0.097 3.903 9 N -0.634 5.634 10 C 0.519 3.481 11 O -0.510 6.510 12 C -0.129 4.129 13 C 0.037 3.963 14 C -0.530 4.530 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.235 3.765 23 H 0.099 0.901 24 C -0.137 4.137 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.262 0.738 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 9.858 -11.555 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.093 4.093 3 N -0.141 5.141 4 N -0.121 5.121 5 C -0.098 4.098 6 N -0.159 5.159 7 C -0.039 4.039 8 C -0.028 4.028 9 N -0.372 5.372 10 C 0.310 3.690 11 O -0.383 6.383 12 C -0.169 4.169 13 C 0.000 4.000 14 C -0.568 4.568 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.130 3.870 23 H 0.117 0.883 24 C -0.195 4.195 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.113 0.887 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.779 11.414 -11.128 19.821 hybrid contribution -1.013 -2.274 0.216 2.499 sum -12.792 9.140 -10.912 19.138 Atomic orbital electron populations 1.20195 0.83668 1.04603 1.03913 1.24732 0.97091 0.82914 1.04599 1.74482 0.96117 1.23676 1.19784 1.74016 1.12113 1.07627 1.18312 1.25090 0.87081 0.92824 1.04789 1.45952 1.06813 1.08477 1.54639 1.22530 0.99764 0.76815 1.04779 1.22004 0.82983 1.00004 0.97765 1.48669 1.28195 1.13122 1.47262 1.21633 0.84215 0.87038 0.76158 1.90699 1.21962 1.74303 1.51364 1.21956 1.02085 0.90452 1.02378 1.18915 0.93789 0.94029 0.93298 1.21165 1.07149 1.00984 1.27541 0.92639 1.25019 0.94905 0.98362 0.95977 1.69990 1.14779 1.36880 1.30938 0.86595 0.79200 0.84350 0.77810 1.20621 1.21174 1.19908 1.19732 0.87710 0.77819 1.01753 0.88329 1.22127 0.99685 1.00978 0.96727 0.89635 0.90393 0.88686 0.87540 0.88491 0.89938 0.86074 0.90264 0.90014 0.95645 0.95764 0.92841 0.88344 0.91862 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.28 36.01 0.37 -0.05 16 2 C 0.17 2.04 8.06 -155.38 -1.25 0.79 16 3 N -0.30 -4.63 12.23 32.71 0.40 -4.23 16 4 N -0.28 -4.61 12.15 32.78 0.40 -4.21 16 5 C 0.17 2.42 7.17 -155.30 -1.11 1.31 16 6 N -0.47 -5.39 3.12 -110.74 -0.35 -5.74 16 7 C 0.09 0.66 6.88 -3.96 -0.03 0.63 16 8 C 0.10 0.84 6.33 -3.55 -0.02 0.82 16 9 N -0.63 -8.44 2.97 -165.83 -0.49 -8.93 16 10 C 0.52 9.03 7.40 -10.99 -0.08 8.95 16 11 O -0.51 -10.78 12.16 5.56 0.07 -10.71 16 12 C -0.13 -2.33 4.04 -27.88 -0.11 -2.44 16 13 C 0.04 0.94 4.26 -27.89 -0.12 0.82 16 14 C -0.53 -14.24 9.11 -34.44 -0.31 -14.55 16 15 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.24 3.21 3.84 -68.39 -0.26 2.94 16 23 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 24 C -0.14 -2.09 7.71 37.16 0.29 -1.81 16 25 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.36 8.01 -51.93 -0.42 -0.05 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.12 0.91 5.97 -51.93 -0.31 0.60 16 32 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 33 H 0.08 1.30 7.53 -51.93 -0.39 0.91 16 34 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.25 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.10 1.62 6.39 -51.93 -0.33 1.28 16 38 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.06 1.08 7.40 -51.93 -0.38 0.69 16 LS Contribution 319.90 15.07 4.82 4.82 Total: -1.00 -35.53 319.90 -7.77 -43.31 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.59 Total: -3.34 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.75 Total: -1.03 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.70 Total: -48.89 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.53 -7.77 -43.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135351662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.202 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds