Wall clock time and date at job start Tue Mar 31 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30818 * 126.44076 * 2 1 4 4 N 1.28933 * 109.74265 * 180.12983 * 3 2 1 5 5 C 1.29726 * 109.42612 * 0.11134 * 4 3 2 6 6 N 1.34793 * 126.44022 * 179.97438 * 2 1 3 7 7 C 1.46328 * 128.58357 * 359.39411 * 6 2 1 8 8 C 1.53337 * 109.11615 * 161.85181 * 7 6 2 9 9 N 1.47075 * 109.28445 * 45.64420 * 8 7 6 10 10 C 1.34773 * 120.94987 * 116.39974 * 9 8 7 11 11 O 1.21283 * 119.99946 * 174.49713 * 10 9 8 12 12 C 1.50699 * 119.99857 * 354.49247 * 10 9 8 13 13 C 1.52999 * 109.47185 * 180.02562 * 12 10 9 14 14 C 1.50690 * 109.47185 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00385 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00106 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99875 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47427 * 89.99859 * 18 16 14 20 20 H 1.48504 * 109.47180 * 210.00074 * 18 16 14 21 21 H 1.48507 * 109.46907 * 330.00024 * 18 16 14 22 22 C 1.47533 * 118.10272 * 296.41949 * 9 8 7 23 23 H 1.09001 * 109.95482 * 283.78623 * 22 9 8 24 24 C 1.52998 * 109.95528 * 162.60014 * 22 9 8 25 25 H 1.08999 * 109.47453 * 90.02334 * 1 2 3 26 26 H 1.09001 * 109.46880 * 210.02608 * 1 2 3 27 27 H 1.08999 * 109.47260 * 330.01971 * 1 2 3 28 28 H 1.08997 * 109.57294 * 41.94614 * 7 6 2 29 29 H 1.08999 * 109.52106 * 281.72723 * 7 6 2 30 30 H 1.08998 * 109.51192 * 285.68446 * 8 7 6 31 31 H 1.09005 * 109.50582 * 165.59456 * 8 7 6 32 32 H 1.09000 * 109.46669 * 299.99983 * 12 10 9 33 33 H 1.08996 * 109.46970 * 60.00176 * 12 10 9 34 34 H 1.08999 * 109.46915 * 299.99975 * 13 12 10 35 35 H 1.09004 * 109.47352 * 59.99405 * 13 12 10 36 36 H 0.97004 * 119.99958 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47128 * 70.60204 * 24 22 9 38 38 H 1.09000 * 109.47314 * 190.60487 * 24 22 9 39 39 H 1.09003 * 109.46807 * 310.60645 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6819 -0.0027 5 6 3.5808 -0.6138 -0.0070 6 7 2.3077 -1.0844 0.0005 7 6 1.9296 -2.4979 0.0132 8 6 3.1259 -3.3418 -0.4426 9 7 4.3394 -2.8756 0.2453 10 6 5.0088 -3.6818 1.0929 11 8 6.0607 -3.3167 1.5736 12 6 4.4501 -5.0368 1.4433 13 6 5.3966 -5.7427 2.4162 14 6 4.8377 -7.0974 2.7671 15 1 3.9008 -7.4223 2.3394 16 6 5.5224 -7.9222 3.6344 17 7 6.6631 -7.5264 4.1557 18 14 4.8298 -9.6018 4.0688 19 1 5.3356 -10.6106 3.1036 20 1 5.2565 -9.9731 5.4419 21 1 3.3468 -9.5570 4.0063 22 6 4.8028 -1.5001 -0.0187 23 1 5.2882 -1.4516 -0.9935 24 6 5.7800 -1.0597 1.0731 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8901 0.5135 28 1 1.0915 -2.6579 -0.6651 29 1 1.6423 -2.7890 1.0236 30 1 3.2554 -3.2379 -1.5198 31 1 2.9476 -4.3887 -0.1967 32 1 3.4726 -4.9170 1.9104 33 1 4.3490 -5.6336 0.5368 34 1 6.3743 -5.8624 1.9495 35 1 5.4975 -5.1457 3.3227 36 1 7.1450 -8.1068 4.7655 37 1 6.7164 -1.6070 0.9649 38 1 5.9712 0.0093 0.9800 39 1 5.3486 -1.2678 2.0522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135351662.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:24 Heat of formation + Delta-G solvation = 27.176555 kcal Electronic energy + Delta-G solvation = -21958.408755 eV Core-core repulsion = 18708.835717 eV Total energy + Delta-G solvation = -3249.573038 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -44.41116 -41.25101 -38.00021 -36.02536 -35.50535 -34.04400 -32.89882 -32.26610 -29.85736 -28.43814 -27.74921 -25.91678 -24.73694 -23.51260 -22.06347 -21.62415 -19.78480 -18.81380 -18.23927 -17.81749 -17.35252 -16.90111 -16.82049 -16.39208 -15.80912 -15.30351 -15.01899 -14.78949 -14.26322 -14.15243 -14.08279 -13.68502 -13.56817 -13.34905 -13.25385 -13.10611 -12.97172 -12.85330 -12.74277 -12.47678 -12.40564 -11.90099 -11.57771 -11.47169 -11.26078 -11.12905 -10.54953 -10.40336 -10.18636 -9.90986 -8.16197 -6.29844 0.70967 1.29356 1.44578 1.46497 1.54948 1.57095 1.71235 1.80323 2.44280 2.97819 3.17896 3.30813 3.45213 3.62112 3.86349 3.97894 4.02323 4.06391 4.13886 4.38129 4.46695 4.53370 4.57755 4.63849 4.67783 4.71680 4.84632 4.89301 4.96037 5.04175 5.08440 5.22728 5.36767 5.52870 5.64741 5.82908 5.87233 6.17966 6.23596 6.89410 7.16487 7.40912 7.60879 8.96310 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.003997 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.359291 B = 7002.869416 C = 7650.386306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.188 3.812 3 N -0.349 5.349 4 N -0.319 5.319 5 C 0.161 3.839 6 N -0.466 5.466 7 C 0.080 3.920 8 C 0.087 3.913 9 N -0.624 5.624 10 C 0.519 3.481 11 O -0.562 6.562 12 C -0.114 4.114 13 C 0.041 3.959 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.273 1.273 20 H -0.291 1.291 21 H -0.252 1.252 22 C 0.239 3.761 23 H 0.117 0.883 24 C -0.126 4.126 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.155 0.845 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.107 0.893 33 H 0.114 0.886 34 H -0.016 1.016 35 H -0.021 1.021 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 8.248 -13.385 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 N -0.189 5.189 4 N -0.158 5.158 5 C -0.110 4.110 6 N -0.157 5.157 7 C -0.042 4.042 8 C -0.035 4.035 9 N -0.360 5.360 10 C 0.310 3.690 11 O -0.440 6.440 12 C -0.154 4.154 13 C 0.004 3.996 14 C -0.577 4.577 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.795 3.205 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.176 1.176 22 C 0.133 3.867 23 H 0.134 0.866 24 C -0.184 4.184 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.173 0.827 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.002 0.998 35 H -0.003 1.003 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.839 9.807 -13.009 22.722 hybrid contribution 0.184 -1.718 0.763 1.889 sum -15.655 8.089 -12.246 21.458 Atomic orbital electron populations 1.20485 0.79854 1.06033 1.05867 1.25640 0.98851 0.82038 1.01456 1.74395 0.96270 1.25816 1.22444 1.73903 1.13276 1.09050 1.19564 1.24934 0.88175 0.92440 1.05441 1.46184 1.05670 1.09988 1.53839 1.22912 1.00508 0.74223 1.06523 1.22465 0.81124 1.01172 0.98756 1.48520 1.29147 1.12329 1.46027 1.21486 0.83801 0.87299 0.76446 1.90702 1.24350 1.75292 1.53617 1.21701 1.01033 0.90601 1.02018 1.18701 0.93795 0.94173 0.92967 1.21712 1.07747 1.01287 1.26917 0.90126 1.26112 0.95131 1.03127 0.96058 1.70181 1.16804 1.38771 1.32135 0.85370 0.79445 0.78662 0.77060 1.19801 1.21740 1.17596 1.19648 0.87558 0.77921 1.01568 0.86576 1.21911 0.99425 1.00961 0.96080 0.87221 0.87656 0.88551 0.82711 0.87921 0.87459 0.84103 0.87515 0.86788 0.99780 1.00257 0.93014 0.89999 0.91468 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.28 71.24 0.73 0.16 16 2 C 0.19 3.94 8.06 138.12 1.11 5.05 16 3 N -0.35 -10.58 12.23 -50.42 -0.62 -11.19 16 4 N -0.32 -10.49 12.15 -50.19 -0.61 -11.10 16 5 C 0.16 4.40 7.17 138.22 0.99 5.39 16 6 N -0.47 -9.39 3.12 -504.28 -1.57 -10.96 16 7 C 0.08 0.84 6.88 86.52 0.60 1.44 16 8 C 0.09 1.13 6.33 86.38 0.55 1.68 16 9 N -0.62 -15.55 2.97 -796.95 -2.37 -17.92 16 10 C 0.52 18.01 7.40 87.66 0.65 18.66 16 11 O -0.56 -25.14 12.16 -3.04 -0.04 -25.17 16 12 C -0.11 -3.95 4.04 29.85 0.12 -3.82 16 13 C 0.04 2.14 4.26 29.84 0.13 2.27 16 14 C -0.54 -28.65 9.11 25.60 0.23 -28.42 16 15 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -57.99 13.29 21.45 0.28 -57.71 16 18 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 22 C 0.24 6.41 3.84 44.13 0.17 6.58 16 23 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 24 C -0.13 -4.08 7.71 71.98 0.56 -3.52 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.10 0.41 8.01 -2.39 -0.02 0.39 16 27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.16 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.14 1.34 5.97 -2.38 -0.01 1.32 16 32 H 0.11 3.12 8.09 -2.39 -0.02 3.10 16 33 H 0.11 3.22 7.53 -2.39 -0.02 3.20 16 34 H -0.02 -0.97 8.10 -2.39 -0.02 -0.98 16 35 H -0.02 -1.26 8.10 -2.38 -0.02 -1.28 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.08 2.91 6.39 -2.39 -0.02 2.90 16 38 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 39 H 0.03 1.24 7.40 -2.39 -0.02 1.23 16 Total: -1.00 -84.45 319.90 4.45 -79.99 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.05 Total: 4.18 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 6.29 Total: 5.54 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.88 Total: -108.87 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.04 Total: -25.17 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -84.45 4.45 -79.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135351662.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.168 kcal (2) G-P(sol) polarization free energy of solvation -84.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds