Wall clock time and date at job start Tue Mar 31 2020 00:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30824 * 126.44280 * 2 1 4 4 N 1.28926 * 109.74531 * 180.15687 * 3 2 1 5 5 C 1.29727 * 109.42307 * 0.10289 * 4 3 2 6 6 N 1.34793 * 126.43972 * 180.02562 * 2 1 3 7 7 C 1.46219 * 128.60246 * 359.45354 * 6 2 1 8 8 C 1.53331 * 109.17884 * 161.81056 * 7 6 2 9 9 N 1.47061 * 109.25160 * 45.62163 * 8 7 6 10 10 C 1.34781 * 120.93602 * 116.42587 * 9 8 7 11 11 O 1.21283 * 120.00056 * 180.02562 * 10 9 8 12 12 C 1.50697 * 120.00094 * 0.02562 * 10 9 8 13 13 C 1.53000 * 109.47018 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46942 * 179.97438 * 13 12 10 15 15 H 1.07993 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47049 * 59.99991 * 18 16 14 20 20 H 1.48508 * 109.46940 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46952 * 300.00250 * 18 16 14 22 22 C 1.47523 * 118.11412 * 296.44581 * 9 8 7 23 23 H 1.08999 * 109.95887 * 162.49539 * 22 9 8 24 24 C 1.52996 * 109.95886 * 283.77512 * 22 9 8 25 25 H 1.08997 * 109.46978 * 269.98160 * 1 2 3 26 26 H 1.09003 * 109.46610 * 29.97650 * 1 2 3 27 27 H 1.08997 * 109.46788 * 149.97891 * 1 2 3 28 28 H 1.09004 * 109.51865 * 281.71618 * 7 6 2 29 29 H 1.08996 * 109.52356 * 41.83988 * 7 6 2 30 30 H 1.08993 * 109.51135 * 165.56361 * 8 7 6 31 31 H 1.08997 * 109.50927 * 285.70858 * 8 7 6 32 32 H 1.09004 * 109.47145 * 299.99820 * 12 10 9 33 33 H 1.09000 * 109.47274 * 59.99669 * 12 10 9 34 34 H 1.08998 * 109.46919 * 299.99322 * 13 12 10 35 35 H 1.09000 * 109.47647 * 59.99557 * 13 12 10 36 36 H 0.97000 * 119.99711 * 180.02562 * 17 16 14 37 37 H 1.08999 * 109.47320 * 177.50496 * 24 22 9 38 38 H 1.08994 * 109.47770 * 297.51149 * 24 22 9 39 39 H 1.09009 * 109.46824 * 57.50982 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5190 0.6820 -0.0033 5 6 3.5807 -0.6138 -0.0078 6 7 2.3077 -1.0844 -0.0005 7 6 1.9303 -2.4970 0.0098 8 6 3.1260 -3.3411 -0.4471 9 7 4.3393 -2.8758 0.2414 10 6 5.0085 -3.6834 1.0880 11 8 6.0071 -3.2820 1.6471 12 6 4.5159 -5.0852 1.3398 13 6 5.4481 -5.7827 2.3325 14 6 4.9551 -7.1843 2.5848 15 1 4.0657 -7.5416 2.0872 16 6 5.6395 -8.0104 3.4509 17 7 6.7230 -7.5753 4.0565 18 14 5.0281 -9.7474 3.7641 19 1 5.0097 -10.5037 2.4862 20 1 5.9337 -10.4249 4.7267 21 1 3.6554 -9.6948 4.3280 22 6 4.8029 -1.5000 -0.0205 23 1 5.4976 -1.1868 0.7588 24 6 5.4846 -1.4302 -1.3884 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6425 -2.7898 1.0196 29 1 1.0916 -2.6549 -0.6682 30 1 2.9473 -4.3881 -0.2022 31 1 3.2559 -3.2355 -1.5241 32 1 3.5081 -5.0474 1.7533 33 1 4.5031 -5.6398 0.4015 34 1 6.4560 -5.8205 1.9194 35 1 5.4605 -5.2279 3.2707 36 1 7.2047 -8.1566 4.6655 37 1 5.7843 -0.4023 -1.5930 38 1 6.3652 -2.0724 -1.3889 39 1 4.7896 -1.7660 -2.1582 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135351663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:30 Heat of formation + Delta-G solvation = 40.240491 kcal Electronic energy + Delta-G solvation = -21840.019192 eV Core-core repulsion = 18591.012649 eV Total energy + Delta-G solvation = -3249.006543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47378 -39.85143 -37.01250 -34.99679 -33.66634 -32.69130 -31.88248 -30.79447 -29.12075 -27.66733 -26.03125 -24.48522 -24.06273 -21.93786 -21.31813 -20.14602 -18.47178 -17.58375 -17.06597 -16.84610 -16.07619 -15.80322 -15.33008 -14.71510 -14.50805 -14.45450 -13.91860 -13.70534 -13.50308 -13.12005 -12.88790 -12.77990 -12.45491 -12.27044 -12.22445 -12.09431 -11.69971 -11.42776 -11.23403 -10.99161 -10.69761 -10.53271 -10.32447 -10.09940 -9.77239 -9.36451 -9.21001 -9.16881 -8.90461 -8.40331 -6.04053 -4.09623 1.61577 2.13912 2.69465 2.80050 2.93003 3.28143 3.33730 3.34751 3.90163 4.02691 4.11845 4.38784 4.46503 4.53517 4.68435 4.92999 4.95053 5.01323 5.09700 5.21496 5.29344 5.30969 5.31402 5.43648 5.49897 5.68026 5.81501 5.91166 5.96937 5.99570 6.03497 6.32494 6.61983 6.70374 7.38263 7.63656 7.73416 7.96622 8.25465 8.45403 8.58715 8.97970 9.54545 11.06721 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.003885 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.755114 B = 7205.092881 C = 7746.782034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.174 3.826 3 N -0.299 5.299 4 N -0.283 5.283 5 C 0.174 3.826 6 N -0.466 5.466 7 C 0.085 3.915 8 C 0.096 3.904 9 N -0.631 5.631 10 C 0.518 3.482 11 O -0.517 6.517 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.531 4.531 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.888 5.888 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.227 3.773 23 H 0.128 0.872 24 C -0.150 4.150 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.319 9.868 -12.473 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 N -0.140 5.140 4 N -0.122 5.122 5 C -0.094 4.094 6 N -0.158 5.158 7 C -0.039 4.039 8 C -0.029 4.029 9 N -0.369 5.369 10 C 0.309 3.691 11 O -0.390 6.390 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.526 5.526 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.121 3.879 23 H 0.146 0.854 24 C -0.209 4.209 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.181 11.441 -11.989 20.567 hybrid contribution -0.894 -2.288 0.217 2.466 sum -13.075 9.152 -11.772 19.832 Atomic orbital electron populations 1.20197 0.83647 1.04401 1.04098 1.24731 0.97095 0.82898 1.04569 1.74482 0.96079 1.23655 1.19807 1.74029 1.12186 1.07606 1.18359 1.24929 0.86994 0.92707 1.04808 1.45911 1.06804 1.08481 1.54570 1.22509 0.99724 0.76843 1.04808 1.21996 0.82993 0.99995 0.97880 1.48664 1.28082 1.13159 1.46979 1.21730 0.82996 0.88148 0.76218 1.90706 1.24987 1.75632 1.47700 1.21934 1.02418 0.89326 1.03036 1.18922 0.93998 0.93989 0.93173 1.21128 1.11309 0.97885 1.26590 0.92643 1.25021 0.94916 0.98521 0.95801 1.69984 1.17285 1.36502 1.28834 0.86646 0.78639 0.84514 0.78090 1.20212 1.21225 1.20246 1.19587 0.89031 0.78605 1.00648 0.85441 1.22044 1.00897 1.03640 0.94298 0.89558 0.88701 0.90451 0.88456 0.87552 0.86045 0.89928 0.90157 0.89852 0.95645 0.95774 0.92771 0.90366 0.90494 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.28 36.01 0.37 -0.05 16 2 C 0.17 2.03 8.06 -155.37 -1.25 0.78 16 3 N -0.30 -4.60 12.23 32.71 0.40 -4.20 16 4 N -0.28 -4.61 12.21 32.79 0.40 -4.21 16 5 C 0.17 2.46 7.16 -155.30 -1.11 1.35 16 6 N -0.47 -5.34 3.11 -110.82 -0.34 -5.69 16 7 C 0.09 0.65 6.92 -4.02 -0.03 0.63 16 8 C 0.10 0.84 6.22 -3.56 -0.02 0.81 16 9 N -0.63 -8.44 2.63 -165.85 -0.44 -8.88 16 10 C 0.52 9.23 7.71 -10.98 -0.08 9.15 16 11 O -0.52 -11.55 15.52 5.55 0.09 -11.47 16 12 C -0.13 -2.32 3.99 -27.88 -0.11 -2.43 16 13 C 0.04 0.93 4.26 -27.88 -0.12 0.81 16 14 C -0.53 -14.31 9.11 -34.44 -0.31 -14.62 16 15 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 18 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.23 3.09 3.25 -68.39 -0.22 2.87 16 23 H 0.13 2.01 7.23 -51.93 -0.38 1.63 16 24 C -0.15 -1.67 9.45 37.16 0.35 -1.32 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.31 7.68 -51.93 -0.40 -0.09 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.11 0.44 7.76 -51.93 -0.40 0.04 16 30 H 0.12 0.91 5.95 -51.93 -0.31 0.60 16 31 H 0.08 0.60 7.47 -51.93 -0.39 0.21 16 32 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 33 H 0.08 1.33 7.76 -51.93 -0.40 0.93 16 34 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.56 7.46 -51.92 -0.39 0.18 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -36.25 323.90 -7.51 -43.76 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.57 Total: -3.72 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.64 Total: -0.45 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.76 Total: -48.87 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.25 -7.51 -43.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135351663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.998 kcal (2) G-P(sol) polarization free energy of solvation -36.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds